co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G42990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0006793: phosphorus metabolic process	0.00E+00
3	GO:0001881: receptor recycling	0.00E+00
4	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
5	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
6	GO:0010200: response to chitin	4.55E-07
7	GO:0006468: protein phosphorylation	2.34E-06
8	GO:0010120: camalexin biosynthetic process	5.05E-06
9	GO:0009617: response to bacterium	1.55E-05
10	GO:0070370: cellular heat acclimation	1.45E-04
11	GO:0080136: priming of cellular response to stress	2.16E-04
12	GO:1903648: positive regulation of chlorophyll catabolic process	2.16E-04
13	GO:0010036: response to boron-containing substance	2.16E-04
14	GO:0043562: cellular response to nitrogen levels	2.29E-04
15	GO:0022900: electron transport chain	2.29E-04
16	GO:0009626: plant-type hypersensitive response	2.47E-04
17	GO:0009816: defense response to bacterium, incompatible interaction	3.65E-04
18	GO:0044419: interspecies interaction between organisms	4.81E-04
19	GO:0031349: positive regulation of defense response	4.81E-04
20	GO:0080026: response to indolebutyric acid	4.81E-04
21	GO:0019483: beta-alanine biosynthetic process	4.81E-04
22	GO:1902000: homogentisate catabolic process	4.81E-04
23	GO:0097054: L-glutamate biosynthetic process	4.81E-04
24	GO:0051592: response to calcium ion	4.81E-04
25	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.81E-04
26	GO:0080029: cellular response to boron-containing substance levels	4.81E-04
27	GO:0006212: uracil catabolic process	4.81E-04
28	GO:0042742: defense response to bacterium	5.52E-04
29	GO:0002237: response to molecule of bacterial origin	6.57E-04
30	GO:0007034: vacuolar transport	6.57E-04
31	GO:0034605: cellular response to heat	6.57E-04
32	GO:0008333: endosome to lysosome transport	7.83E-04
33	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.83E-04
34	GO:0034051: negative regulation of plant-type hypersensitive response	7.83E-04
35	GO:1900140: regulation of seedling development	7.83E-04
36	GO:0010351: lithium ion transport	7.83E-04
37	GO:0009410: response to xenobiotic stimulus	7.83E-04
38	GO:0009072: aromatic amino acid family metabolic process	7.83E-04
39	GO:0007166: cell surface receptor signaling pathway	8.67E-04
40	GO:0015700: arsenite transport	1.12E-03
41	GO:0006537: glutamate biosynthetic process	1.12E-03
42	GO:0048530: fruit morphogenesis	1.12E-03
43	GO:0080024: indolebutyric acid metabolic process	1.12E-03
44	GO:0070676: intralumenal vesicle formation	1.12E-03
45	GO:0006882: cellular zinc ion homeostasis	1.12E-03
46	GO:0046713: borate transport	1.12E-03
47	GO:0048194: Golgi vesicle budding	1.12E-03
48	GO:0009814: defense response, incompatible interaction	1.18E-03
49	GO:0071456: cellular response to hypoxia	1.18E-03
50	GO:0010508: positive regulation of autophagy	1.48E-03
51	GO:2000038: regulation of stomatal complex development	1.48E-03
52	GO:0019676: ammonia assimilation cycle	1.48E-03
53	GO:0060548: negative regulation of cell death	1.48E-03
54	GO:0045487: gibberellin catabolic process	1.89E-03
55	GO:0031365: N-terminal protein amino acid modification	1.89E-03
56	GO:0034052: positive regulation of plant-type hypersensitive response	1.89E-03
57	GO:0010183: pollen tube guidance	2.03E-03
58	GO:0000302: response to reactive oxygen species	2.17E-03
59	GO:0009228: thiamine biosynthetic process	2.33E-03
60	GO:0002238: response to molecule of fungal origin	2.33E-03
61	GO:0006561: proline biosynthetic process	2.33E-03
62	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.33E-03
63	GO:0009612: response to mechanical stimulus	2.80E-03
64	GO:0010199: organ boundary specification between lateral organs and the meristem	2.80E-03
65	GO:0010555: response to mannitol	2.80E-03
66	GO:2000037: regulation of stomatal complex patterning	2.80E-03
67	GO:2000067: regulation of root morphogenesis	2.80E-03
68	GO:0000911: cytokinesis by cell plate formation	2.80E-03
69	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.30E-03
70	GO:0030026: cellular manganese ion homeostasis	3.30E-03
71	GO:1900057: positive regulation of leaf senescence	3.30E-03
72	GO:0043090: amino acid import	3.30E-03
73	GO:1900056: negative regulation of leaf senescence	3.30E-03
74	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.82E-03
75	GO:0009819: drought recovery	3.82E-03
76	GO:0043068: positive regulation of programmed cell death	3.82E-03
77	GO:0010150: leaf senescence	4.02E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	4.38E-03
79	GO:0010262: somatic embryogenesis	4.38E-03
80	GO:0051865: protein autoubiquitination	4.95E-03
81	GO:0010112: regulation of systemic acquired resistance	4.95E-03
82	GO:0046685: response to arsenic-containing substance	4.95E-03
83	GO:0055062: phosphate ion homeostasis	6.18E-03
84	GO:0007064: mitotic sister chromatid cohesion	6.18E-03
85	GO:0006032: chitin catabolic process	6.18E-03
86	GO:0051707: response to other organism	6.63E-03
87	GO:0000272: polysaccharide catabolic process	6.84E-03
88	GO:0009750: response to fructose	6.84E-03
89	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.51E-03
90	GO:0012501: programmed cell death	7.51E-03
91	GO:0006970: response to osmotic stress	7.70E-03
92	GO:0031347: regulation of defense response	8.03E-03
93	GO:0006807: nitrogen compound metabolic process	8.22E-03
94	GO:0010229: inflorescence development	8.22E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	8.22E-03
96	GO:0009737: response to abscisic acid	8.82E-03
97	GO:0006952: defense response	8.86E-03
98	GO:0010224: response to UV-B	9.26E-03
99	GO:0070588: calcium ion transmembrane transport	9.69E-03
100	GO:0010053: root epidermal cell differentiation	9.69E-03
101	GO:0009863: salicylic acid mediated signaling pathway	1.12E-02
102	GO:2000377: regulation of reactive oxygen species metabolic process	1.12E-02
103	GO:0005992: trehalose biosynthetic process	1.12E-02
104	GO:0045454: cell redox homeostasis	1.16E-02
105	GO:0009409: response to cold	1.19E-02
106	GO:0009695: jasmonic acid biosynthetic process	1.21E-02
107	GO:0006874: cellular calcium ion homeostasis	1.21E-02
108	GO:0031408: oxylipin biosynthetic process	1.29E-02
109	GO:0016998: cell wall macromolecule catabolic process	1.29E-02
110	GO:0032259: methylation	1.43E-02
111	GO:0009686: gibberellin biosynthetic process	1.46E-02
112	GO:0010091: trichome branching	1.55E-02
113	GO:0042147: retrograde transport, endosome to Golgi	1.64E-02
114	GO:0042391: regulation of membrane potential	1.74E-02
115	GO:0061025: membrane fusion	1.93E-02
116	GO:0006814: sodium ion transport	1.93E-02
117	GO:0009749: response to glucose	2.02E-02
118	GO:0006623: protein targeting to vacuole	2.02E-02
119	GO:0010193: response to ozone	2.12E-02
120	GO:0030163: protein catabolic process	2.33E-02
121	GO:0006979: response to oxidative stress	2.39E-02
122	GO:0009639: response to red or far red light	2.44E-02
123	GO:0006464: cellular protein modification process	2.44E-02
124	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.47E-02
125	GO:0007165: signal transduction	2.48E-02
126	GO:0010468: regulation of gene expression	2.64E-02
127	GO:0051607: defense response to virus	2.65E-02
128	GO:0001666: response to hypoxia	2.76E-02
129	GO:0055114: oxidation-reduction process	2.97E-02
130	GO:0009611: response to wounding	3.20E-02
131	GO:0048481: plant ovule development	3.34E-02
132	GO:0008219: cell death	3.34E-02
133	GO:0048767: root hair elongation	3.46E-02
134	GO:0009813: flavonoid biosynthetic process	3.46E-02
135	GO:0009407: toxin catabolic process	3.58E-02
136	GO:0045893: positive regulation of transcription, DNA-templated	3.69E-02
137	GO:0048527: lateral root development	3.70E-02
138	GO:0010043: response to zinc ion	3.70E-02
139	GO:0006865: amino acid transport	3.82E-02
140	GO:0080167: response to karrikin	4.23E-02
141	GO:0016192: vesicle-mediated transport	4.45E-02
142	GO:0006631: fatty acid metabolic process	4.46E-02
143	GO:0042542: response to hydrogen peroxide	4.59E-02
144	GO:0016567: protein ubiquitination	4.62E-02
145	GO:0010114: response to red light	4.73E-02
146	GO:0009744: response to sucrose	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
4	GO:1990837: sequence-specific double-stranded DNA binding	0.00E+00
5	GO:0003837: beta-ureidopropionase activity	0.00E+00
6	GO:0004674: protein serine/threonine kinase activity	4.59E-06
7	GO:0016301: kinase activity	1.54E-04
8	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.16E-04
9	GO:0004321: fatty-acyl-CoA synthase activity	2.16E-04
10	GO:0016041: glutamate synthase (ferredoxin) activity	2.16E-04
11	GO:0019172: glyoxalase III activity	4.81E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	4.81E-04
13	GO:0015105: arsenite transmembrane transporter activity	4.81E-04
14	GO:0004190: aspartic-type endopeptidase activity	7.34E-04
15	GO:0000975: regulatory region DNA binding	7.83E-04
16	GO:0031683: G-protein beta/gamma-subunit complex binding	7.83E-04
17	GO:0001664: G-protein coupled receptor binding	7.83E-04
18	GO:0035529: NADH pyrophosphatase activity	1.12E-03
19	GO:0046715: borate transmembrane transporter activity	1.12E-03
20	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.12E-03
21	GO:0005524: ATP binding	1.48E-03
22	GO:0004301: epoxide hydrolase activity	1.48E-03
23	GO:0015368: calcium:cation antiporter activity	1.48E-03
24	GO:0015369: calcium:proton antiporter activity	1.48E-03
25	GO:0005509: calcium ion binding	1.70E-03
26	GO:0000104: succinate dehydrogenase activity	1.89E-03
27	GO:0031386: protein tag	1.89E-03
28	GO:0047631: ADP-ribose diphosphatase activity	1.89E-03
29	GO:0051538: 3 iron, 4 sulfur cluster binding	1.89E-03
30	GO:0045431: flavonol synthase activity	1.89E-03
31	GO:0000210: NAD+ diphosphatase activity	2.33E-03
32	GO:0004866: endopeptidase inhibitor activity	2.33E-03
33	GO:0030976: thiamine pyrophosphate binding	2.33E-03
34	GO:0004871: signal transducer activity	2.67E-03
35	GO:0004012: phospholipid-translocating ATPase activity	2.80E-03
36	GO:0004602: glutathione peroxidase activity	2.80E-03
37	GO:0051920: peroxiredoxin activity	2.80E-03
38	GO:0004143: diacylglycerol kinase activity	3.30E-03
39	GO:0008235: metalloexopeptidase activity	3.30E-03
40	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.30E-03
41	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.68E-03
42	GO:0015491: cation:cation antiporter activity	3.82E-03
43	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.82E-03
44	GO:0016209: antioxidant activity	3.82E-03
45	GO:0004672: protein kinase activity	4.26E-03
46	GO:0016207: 4-coumarate-CoA ligase activity	4.95E-03
47	GO:0004713: protein tyrosine kinase activity	6.18E-03
48	GO:0004568: chitinase activity	6.18E-03
49	GO:0008168: methyltransferase activity	6.68E-03
50	GO:0008794: arsenate reductase (glutaredoxin) activity	6.84E-03
51	GO:0001054: RNA polymerase I activity	6.84E-03
52	GO:0004177: aminopeptidase activity	6.84E-03
53	GO:0004601: peroxidase activity	7.01E-03
54	GO:0043565: sequence-specific DNA binding	7.34E-03
55	GO:0001056: RNA polymerase III activity	7.51E-03
56	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.22E-03
57	GO:0005262: calcium channel activity	8.22E-03
58	GO:0005388: calcium-transporting ATPase activity	8.22E-03
59	GO:0008061: chitin binding	9.69E-03
60	GO:0030552: cAMP binding	9.69E-03
61	GO:0030553: cGMP binding	9.69E-03
62	GO:0005216: ion channel activity	1.21E-02
63	GO:0004707: MAP kinase activity	1.29E-02
64	GO:0004298: threonine-type endopeptidase activity	1.29E-02
65	GO:0033612: receptor serine/threonine kinase binding	1.29E-02
66	GO:0005516: calmodulin binding	1.52E-02
67	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.55E-02
68	GO:0005249: voltage-gated potassium channel activity	1.74E-02
69	GO:0030551: cyclic nucleotide binding	1.74E-02
70	GO:0016853: isomerase activity	1.93E-02
71	GO:0046872: metal ion binding	2.56E-02
72	GO:0015250: water channel activity	2.76E-02
73	GO:0051213: dioxygenase activity	2.76E-02
74	GO:0005515: protein binding	2.97E-02
75	GO:0030247: polysaccharide binding	3.10E-02
76	GO:0004683: calmodulin-dependent protein kinase activity	3.10E-02
77	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.22E-02
78	GO:0050897: cobalt ion binding	3.70E-02
79	GO:0030145: manganese ion binding	3.70E-02
80	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.70E-02
81	GO:0004842: ubiquitin-protein transferase activity	3.79E-02
82	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.95E-02
83	GO:0050660: flavin adenine dinucleotide binding	3.95E-02
84	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.07E-02
85	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.20E-02
86	GO:0004497: monooxygenase activity	4.23E-02
87	GO:0050661: NADP binding	4.33E-02
88	GO:0061630: ubiquitin protein ligase activity	4.45E-02
89	GO:0004364: glutathione transferase activity	4.59E-02
90	GO:0005484: SNAP receptor activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	5.95E-06
2	GO:0005771: multivesicular body	7.90E-05
3	GO:0016328: lateral plasma membrane	7.83E-04
4	GO:0030904: retromer complex	2.33E-03
5	GO:0000815: ESCRT III complex	2.80E-03
6	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.82E-03
7	GO:0019773: proteasome core complex, alpha-subunit complex	4.38E-03
8	GO:0031090: organelle membrane	4.95E-03
9	GO:0005736: DNA-directed RNA polymerase I complex	4.95E-03
10	GO:0005666: DNA-directed RNA polymerase III complex	5.56E-03
11	GO:0005750: mitochondrial respiratory chain complex III	8.94E-03
12	GO:0005834: heterotrimeric G-protein complex	1.13E-02
13	GO:0005839: proteasome core complex	1.29E-02
14	GO:0016021: integral component of membrane	1.49E-02
15	GO:0005770: late endosome	1.83E-02
16	GO:0009504: cell plate	2.02E-02
17	GO:0005887: integral component of plasma membrane	2.23E-02
18	GO:0048046: apoplast	2.45E-02
19	GO:0000325: plant-type vacuole	3.70E-02
20	GO:0031902: late endosome membrane	4.46E-02
21	GO:0090406: pollen tube	4.73E-02