co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G42550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
4	GO:0071370: cellular response to gibberellin stimulus	3.12E-05
5	GO:0006659: phosphatidylserine biosynthetic process	3.12E-05
6	GO:0000066: mitochondrial ornithine transport	3.12E-05
7	GO:0007154: cell communication	7.88E-05
8	GO:0006021: inositol biosynthetic process	2.76E-04
9	GO:0009765: photosynthesis, light harvesting	2.76E-04
10	GO:0009904: chloroplast accumulation movement	3.53E-04
11	GO:0032876: negative regulation of DNA endoreduplication	3.53E-04
12	GO:0016120: carotene biosynthetic process	3.53E-04
13	GO:0009637: response to blue light	4.20E-04
14	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.34E-04
15	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.34E-04
16	GO:0017148: negative regulation of translation	5.20E-04
17	GO:0009903: chloroplast avoidance movement	5.20E-04
18	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.20E-04
19	GO:0010417: glucuronoxylan biosynthetic process	7.94E-04
20	GO:0007389: pattern specification process	7.94E-04
21	GO:0006096: glycolytic process	8.40E-04
22	GO:0009056: catabolic process	8.92E-04
23	GO:0000902: cell morphogenesis	8.92E-04
24	GO:0051555: flavonol biosynthetic process	1.10E-03
25	GO:0009416: response to light stimulus	1.17E-03
26	GO:0000038: very long-chain fatty acid metabolic process	1.20E-03
27	GO:0006633: fatty acid biosynthetic process	1.54E-03
28	GO:0019253: reductive pentose-phosphate cycle	1.55E-03
29	GO:0009825: multidimensional cell growth	1.67E-03
30	GO:0005985: sucrose metabolic process	1.67E-03
31	GO:0006833: water transport	1.79E-03
32	GO:0009768: photosynthesis, light harvesting in photosystem I	2.05E-03
33	GO:0016117: carotenoid biosynthetic process	2.75E-03
34	GO:0071555: cell wall organization	2.84E-03
35	GO:0034220: ion transmembrane transport	2.90E-03
36	GO:0010051: xylem and phloem pattern formation	2.90E-03
37	GO:0000226: microtubule cytoskeleton organization	2.90E-03
38	GO:0042335: cuticle development	2.90E-03
39	GO:0080167: response to karrikin	3.20E-03
40	GO:0008654: phospholipid biosynthetic process	3.36E-03
41	GO:0009791: post-embryonic development	3.36E-03
42	GO:0007264: small GTPase mediated signal transduction	3.68E-03
43	GO:0016126: sterol biosynthetic process	4.52E-03
44	GO:0018298: protein-chromophore linkage	5.42E-03
45	GO:0010218: response to far red light	5.79E-03
46	GO:0009834: plant-type secondary cell wall biogenesis	5.79E-03
47	GO:0010119: regulation of stomatal movement	5.99E-03
48	GO:0006839: mitochondrial transport	6.98E-03
49	GO:0010114: response to red light	7.60E-03
50	GO:0042546: cell wall biogenesis	7.81E-03
51	GO:0009809: lignin biosynthetic process	9.36E-03
52	GO:0051726: regulation of cell cycle	1.25E-02
53	GO:0009414: response to water deprivation	1.65E-02
54	GO:0010228: vegetative to reproductive phase transition of meristem	1.82E-02
55	GO:0007166: cell surface receptor signaling pathway	1.94E-02
56	GO:0009617: response to bacterium	2.00E-02
57	GO:0009409: response to cold	2.29E-02
58	GO:0006810: transport	2.49E-02
59	GO:0009860: pollen tube growth	2.54E-02
60	GO:0005975: carbohydrate metabolic process	2.57E-02
61	GO:0007049: cell cycle	2.61E-02
62	GO:0046777: protein autophosphorylation	2.95E-02
63	GO:0015979: photosynthesis	3.09E-02
64	GO:0032259: methylation	3.59E-02
65	GO:0016042: lipid catabolic process	3.63E-02
66	GO:0009408: response to heat	3.71E-02
67	GO:0006468: protein phosphorylation	3.75E-02
68	GO:0009753: response to jasmonic acid	3.90E-02
69	GO:0009793: embryo development ending in seed dormancy	3.91E-02

Rank	GO Term	Adjusted P value
1	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
2	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
3	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
4	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
5	GO:0033961: cis-stilbene-oxide hydrolase activity	0.00E+00
6	GO:0030797: 24-methylenesterol C-methyltransferase activity	3.12E-05
7	GO:0010313: phytochrome binding	3.12E-05
8	GO:0051087: chaperone binding	7.08E-05
9	GO:0004618: phosphoglycerate kinase activity	7.88E-05
10	GO:0000064: L-ornithine transmembrane transporter activity	7.88E-05
11	GO:0004512: inositol-3-phosphate synthase activity	7.88E-05
12	GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	1.37E-04
13	GO:0048027: mRNA 5'-UTR binding	2.04E-04
14	GO:0004301: epoxide hydrolase activity	2.76E-04
15	GO:0042285: xylosyltransferase activity	3.53E-04
16	GO:0000210: NAD+ diphosphatase activity	4.34E-04
17	GO:0016621: cinnamoyl-CoA reductase activity	6.07E-04
18	GO:0030955: potassium ion binding	9.92E-04
19	GO:0004743: pyruvate kinase activity	9.92E-04
20	GO:0004575: sucrose alpha-glucosidase activity	9.92E-04
21	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-03
22	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.65E-03
23	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.79E-03
24	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.79E-03
25	GO:0031409: pigment binding	1.79E-03
26	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.79E-03
27	GO:0004176: ATP-dependent peptidase activity	2.19E-03
28	GO:0019901: protein kinase binding	3.36E-03
29	GO:0052689: carboxylic ester hydrolase activity	3.53E-03
30	GO:0004518: nuclease activity	3.68E-03
31	GO:0008237: metallopeptidase activity	4.17E-03
32	GO:0015250: water channel activity	4.52E-03
33	GO:0016168: chlorophyll binding	4.69E-03
34	GO:0030247: polysaccharide binding	5.05E-03
35	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.23E-03
36	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.79E-03
37	GO:0004222: metalloendopeptidase activity	5.79E-03
38	GO:0016787: hydrolase activity	7.44E-03
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.13E-02
40	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.13E-02
41	GO:0016757: transferase activity, transferring glycosyl groups	1.34E-02
42	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.68E-02
43	GO:0008194: UDP-glycosyltransferase activity	1.91E-02
44	GO:0000287: magnesium ion binding	2.38E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	2.44E-02
46	GO:0004672: protein kinase activity	2.49E-02
47	GO:0042803: protein homodimerization activity	3.30E-02
48	GO:0004871: signal transducer activity	3.30E-02
49	GO:0046872: metal ion binding	3.67E-02
50	GO:0003924: GTPase activity	3.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009509: chromoplast	1.37E-04
2	GO:0005775: vacuolar lumen	2.04E-04
3	GO:0030076: light-harvesting complex	1.67E-03
4	GO:0009522: photosystem I	3.20E-03
5	GO:0009523: photosystem II	3.36E-03
6	GO:0000139: Golgi membrane	4.16E-03
7	GO:0005743: mitochondrial inner membrane	4.38E-03
8	GO:0009507: chloroplast	5.02E-03
9	GO:0000325: plant-type vacuole	5.99E-03
10	GO:0009579: thylakoid	9.96E-03
11	GO:0031225: anchored component of membrane	1.30E-02
12	GO:0010287: plastoglobule	1.35E-02
13	GO:0005623: cell	1.43E-02
14	GO:0016021: integral component of membrane	1.54E-02
15	GO:0009941: chloroplast envelope	2.02E-02
16	GO:0009536: plastid	2.08E-02
17	GO:0009505: plant-type cell wall	2.12E-02
18	GO:0046658: anchored component of plasma membrane	2.16E-02
19	GO:0009506: plasmodesma	2.25E-02
20	GO:0005886: plasma membrane	3.20E-02
21	GO:0005794: Golgi apparatus	3.52E-02
22	GO:0009535: chloroplast thylakoid membrane	3.79E-02
23	GO:0043231: intracellular membrane-bounded organelle	3.97E-02
24	GO:0005887: integral component of plasma membrane	4.61E-02