Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071260: cellular response to mechanical stimulus0.00E+00
2GO:0010203: response to very low fluence red light stimulus0.00E+00
3GO:0060560: developmental growth involved in morphogenesis0.00E+00
4GO:0071311: cellular response to acetate0.00E+00
5GO:0080173: male-female gamete recognition during double fertilization5.34E-05
6GO:0071076: RNA 3' uridylation5.34E-05
7GO:1903705: positive regulation of production of siRNA involved in RNA interference5.34E-05
8GO:0010201: response to continuous far red light stimulus by the high-irradiance response system5.34E-05
9GO:0034628: 'de novo' NAD biosynthetic process from aspartate5.34E-05
10GO:0030259: lipid glycosylation1.30E-04
11GO:0015914: phospholipid transport1.30E-04
12GO:0009663: plasmodesma organization2.22E-04
13GO:0071230: cellular response to amino acid stimulus2.22E-04
14GO:0017006: protein-tetrapyrrole linkage2.22E-04
15GO:0045836: positive regulation of meiotic nuclear division2.22E-04
16GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process2.22E-04
17GO:0032456: endocytic recycling3.25E-04
18GO:0009584: detection of visible light3.25E-04
19GO:0030100: regulation of endocytosis3.25E-04
20GO:0060964: regulation of gene silencing by miRNA3.25E-04
21GO:1903830: magnesium ion transmembrane transport4.35E-04
22GO:2000306: positive regulation of photomorphogenesis4.35E-04
23GO:0045927: positive regulation of growth5.52E-04
24GO:0006656: phosphatidylcholine biosynthetic process5.52E-04
25GO:0009435: NAD biosynthetic process5.52E-04
26GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.76E-04
27GO:0002238: response to molecule of fungal origin6.76E-04
28GO:0017148: negative regulation of translation8.05E-04
29GO:0015693: magnesium ion transport9.40E-04
30GO:0010161: red light signaling pathway9.40E-04
31GO:0010078: maintenance of root meristem identity1.08E-03
32GO:0071482: cellular response to light stimulus1.23E-03
33GO:0046685: response to arsenic-containing substance1.38E-03
34GO:0048507: meristem development1.38E-03
35GO:0009638: phototropism1.54E-03
36GO:0030042: actin filament depolymerization1.54E-03
37GO:0006535: cysteine biosynthetic process from serine1.71E-03
38GO:0010215: cellulose microfibril organization1.71E-03
39GO:0006816: calcium ion transport1.88E-03
40GO:0007015: actin filament organization2.43E-03
41GO:0009058: biosynthetic process2.54E-03
42GO:0009416: response to light stimulus2.78E-03
43GO:0019344: cysteine biosynthetic process3.03E-03
44GO:0006874: cellular calcium ion homeostasis3.24E-03
45GO:0009695: jasmonic acid biosynthetic process3.24E-03
46GO:0061077: chaperone-mediated protein folding3.46E-03
47GO:0051321: meiotic cell cycle3.46E-03
48GO:0051260: protein homooligomerization3.46E-03
49GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.90E-03
50GO:0019722: calcium-mediated signaling4.13E-03
51GO:0009306: protein secretion4.13E-03
52GO:0016117: carotenoid biosynthetic process4.36E-03
53GO:0070417: cellular response to cold4.36E-03
54GO:0051028: mRNA transport4.36E-03
55GO:0034220: ion transmembrane transport4.60E-03
56GO:0010268: brassinosteroid homeostasis4.84E-03
57GO:0009749: response to glucose5.34E-03
58GO:0006635: fatty acid beta-oxidation5.60E-03
59GO:0016132: brassinosteroid biosynthetic process5.60E-03
60GO:0009630: gravitropism5.86E-03
61GO:0009567: double fertilization forming a zygote and endosperm6.39E-03
62GO:0006904: vesicle docking involved in exocytosis6.66E-03
63GO:0009911: positive regulation of flower development7.22E-03
64GO:0010029: regulation of seed germination7.50E-03
65GO:0015995: chlorophyll biosynthetic process8.09E-03
66GO:0048573: photoperiodism, flowering8.09E-03
67GO:0006950: response to stress8.09E-03
68GO:0009817: defense response to fungus, incompatible interaction8.68E-03
69GO:0030244: cellulose biosynthetic process8.68E-03
70GO:0018298: protein-chromophore linkage8.68E-03
71GO:0010218: response to far red light9.30E-03
72GO:0006397: mRNA processing9.71E-03
73GO:0030001: metal ion transport1.12E-02
74GO:0006897: endocytosis1.16E-02
75GO:0009640: photomorphogenesis1.23E-02
76GO:0042538: hyperosmotic salinity response1.44E-02
77GO:0009585: red, far-red light phototransduction1.51E-02
78GO:0009738: abscisic acid-activated signaling pathway1.60E-02
79GO:0009909: regulation of flower development1.63E-02
80GO:0009740: gibberellic acid mediated signaling pathway1.86E-02
81GO:0009553: embryo sac development1.90E-02
82GO:0009845: seed germination2.41E-02
83GO:0040008: regulation of growth2.77E-02
84GO:0016567: protein ubiquitination2.78E-02
85GO:0010228: vegetative to reproductive phase transition of meristem2.96E-02
86GO:0008380: RNA splicing3.25E-02
87GO:0006979: response to oxidative stress3.38E-02
88GO:0009826: unidimensional cell growth3.81E-02
89GO:0009860: pollen tube growth4.12E-02
90GO:0007049: cell cycle4.23E-02
91GO:0009723: response to ethylene4.34E-02
92GO:0046777: protein autophosphorylation4.78E-02
93GO:0044550: secondary metabolite biosynthetic process4.84E-02
RankGO TermAdjusted P value
1GO:0004515: nicotinate-nucleotide adenylyltransferase activity0.00E+00
2GO:0009917: sterol 5-alpha reductase activity0.00E+00
3GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity0.00E+00
4GO:0015276: ligand-gated ion channel activity0.00E+00
5GO:0000309: nicotinamide-nucleotide adenylyltransferase activity0.00E+00
6GO:0050213: progesterone 5-alpha-reductase activity0.00E+00
7GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity0.00E+00
8GO:0047751: cholestenone 5-alpha-reductase activity0.00E+00
9GO:0008692: 3-hydroxybutyryl-CoA epimerase activity5.34E-05
10GO:0008066: glutamate receptor activity5.34E-05
11GO:0030275: LRR domain binding5.34E-05
12GO:0050265: RNA uridylyltransferase activity5.34E-05
13GO:0031516: far-red light photoreceptor activity5.34E-05
14GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity1.30E-04
15GO:0050017: L-3-cyanoalanine synthase activity1.30E-04
16GO:0009883: red or far-red light photoreceptor activity1.30E-04
17GO:0008020: G-protein coupled photoreceptor activity2.22E-04
18GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.25E-04
19GO:0004165: dodecenoyl-CoA delta-isomerase activity3.25E-04
20GO:0004300: enoyl-CoA hydratase activity3.25E-04
21GO:0008526: phosphatidylinositol transporter activity4.35E-04
22GO:0004124: cysteine synthase activity8.05E-04
23GO:0031625: ubiquitin protein ligase binding1.51E-03
24GO:0004673: protein histidine kinase activity1.71E-03
25GO:0015095: magnesium ion transmembrane transporter activity2.25E-03
26GO:0000155: phosphorelay sensor kinase activity2.25E-03
27GO:0005262: calcium channel activity2.25E-03
28GO:0003729: mRNA binding2.38E-03
29GO:0005217: intracellular ligand-gated ion channel activity2.63E-03
30GO:0004970: ionotropic glutamate receptor activity2.63E-03
31GO:0016779: nucleotidyltransferase activity3.68E-03
32GO:0042802: identical protein binding4.19E-03
33GO:0046873: metal ion transmembrane transporter activity4.84E-03
34GO:0005525: GTP binding5.22E-03
35GO:0042803: protein homodimerization activity7.91E-03
36GO:0003924: GTPase activity9.31E-03
37GO:0004842: ubiquitin-protein transferase activity1.03E-02
38GO:0005198: structural molecule activity1.33E-02
39GO:0016874: ligase activity1.86E-02
40GO:0003779: actin binding1.90E-02
41GO:0016740: transferase activity2.02E-02
42GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.32E-02
43GO:0019825: oxygen binding2.36E-02
44GO:0030170: pyridoxal phosphate binding2.46E-02
45GO:0005509: calcium ion binding3.10E-02
46GO:0016757: transferase activity, transferring glycosyl groups3.19E-02
47GO:0005506: iron ion binding3.30E-02
48GO:0046982: protein heterodimerization activity3.86E-02
49GO:0004497: monooxygenase activity4.56E-02
50GO:0004672: protein kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0000151: ubiquitin ligase complex6.46E-04
2GO:0016604: nuclear body1.54E-03
3GO:0015629: actin cytoskeleton3.90E-03
4GO:0005737: cytoplasm3.91E-03
5GO:0005768: endosome5.95E-03
6GO:0000932: P-body7.22E-03
7GO:0005681: spliceosomal complex1.70E-02
8GO:0016607: nuclear speck1.74E-02
9GO:0010008: endosome membrane1.74E-02
10GO:0005834: heterotrimeric G-protein complex1.78E-02
11GO:0005654: nucleoplasm2.24E-02
12GO:0009543: chloroplast thylakoid lumen2.28E-02
13GO:0005794: Golgi apparatus3.60E-02
14GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.18E-02
Gene type



Gene DE type