Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:1905499: trichome papilla formation0.00E+00
6GO:0015739: sialic acid transport0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I1.39E-10
8GO:0010196: nonphotochemical quenching6.73E-06
9GO:0015979: photosynthesis6.98E-06
10GO:0090391: granum assembly1.77E-05
11GO:0042335: cuticle development2.07E-05
12GO:0015976: carbon utilization6.97E-05
13GO:0006869: lipid transport8.33E-05
14GO:0055114: oxidation-reduction process1.31E-04
15GO:0042254: ribosome biogenesis1.57E-04
16GO:0071555: cell wall organization1.95E-04
17GO:1902458: positive regulation of stomatal opening3.32E-04
18GO:0071588: hydrogen peroxide mediated signaling pathway3.32E-04
19GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.32E-04
20GO:0009443: pyridoxal 5'-phosphate salvage3.32E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process3.32E-04
22GO:0046520: sphingoid biosynthetic process3.32E-04
23GO:1904964: positive regulation of phytol biosynthetic process3.32E-04
24GO:0071277: cellular response to calcium ion3.32E-04
25GO:0042371: vitamin K biosynthetic process3.32E-04
26GO:0032544: plastid translation4.31E-04
27GO:0006810: transport5.72E-04
28GO:1903426: regulation of reactive oxygen species biosynthetic process7.24E-04
29GO:0030388: fructose 1,6-bisphosphate metabolic process7.24E-04
30GO:0010024: phytochromobilin biosynthetic process7.24E-04
31GO:0010115: regulation of abscisic acid biosynthetic process7.24E-04
32GO:1902326: positive regulation of chlorophyll biosynthetic process7.24E-04
33GO:0010027: thylakoid membrane organization7.53E-04
34GO:0018298: protein-chromophore linkage1.05E-03
35GO:0090506: axillary shoot meristem initiation1.17E-03
36GO:0015714: phosphoenolpyruvate transport1.17E-03
37GO:0006000: fructose metabolic process1.17E-03
38GO:0006518: peptide metabolic process1.17E-03
39GO:0006788: heme oxidation1.17E-03
40GO:0010207: photosystem II assembly1.19E-03
41GO:0019253: reductive pentose-phosphate cycle1.19E-03
42GO:0010025: wax biosynthetic process1.49E-03
43GO:0006636: unsaturated fatty acid biosynthetic process1.49E-03
44GO:0045454: cell redox homeostasis1.56E-03
45GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.68E-03
46GO:0006166: purine ribonucleoside salvage1.68E-03
47GO:0007231: osmosensory signaling pathway1.68E-03
48GO:0006241: CTP biosynthetic process1.68E-03
49GO:0006165: nucleoside diphosphate phosphorylation1.68E-03
50GO:0006168: adenine salvage1.68E-03
51GO:0006228: UTP biosynthetic process1.68E-03
52GO:0043572: plastid fission1.68E-03
53GO:0061077: chaperone-mediated protein folding2.00E-03
54GO:0008643: carbohydrate transport2.15E-03
55GO:0016042: lipid catabolic process2.15E-03
56GO:0009765: photosynthesis, light harvesting2.26E-03
57GO:2000122: negative regulation of stomatal complex development2.26E-03
58GO:0006183: GTP biosynthetic process2.26E-03
59GO:0045727: positive regulation of translation2.26E-03
60GO:0033500: carbohydrate homeostasis2.26E-03
61GO:0015994: chlorophyll metabolic process2.26E-03
62GO:0042991: transcription factor import into nucleus2.26E-03
63GO:0015713: phosphoglycerate transport2.26E-03
64GO:0010037: response to carbon dioxide2.26E-03
65GO:0009956: radial pattern formation2.26E-03
66GO:0016123: xanthophyll biosynthetic process2.89E-03
67GO:0044209: AMP salvage2.89E-03
68GO:0006665: sphingolipid metabolic process2.89E-03
69GO:0006564: L-serine biosynthetic process2.89E-03
70GO:0016120: carotene biosynthetic process2.89E-03
71GO:0010236: plastoquinone biosynthetic process2.89E-03
72GO:0045038: protein import into chloroplast thylakoid membrane2.89E-03
73GO:0006656: phosphatidylcholine biosynthetic process2.89E-03
74GO:0010087: phloem or xylem histogenesis3.03E-03
75GO:0010305: leaf vascular tissue pattern formation3.26E-03
76GO:0010182: sugar mediated signaling pathway3.26E-03
77GO:0009658: chloroplast organization3.56E-03
78GO:0010405: arabinogalactan protein metabolic process3.57E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.57E-03
80GO:0009913: epidermal cell differentiation3.57E-03
81GO:0016554: cytidine to uridine editing3.57E-03
82GO:0018258: protein O-linked glycosylation via hydroxyproline3.57E-03
83GO:0035435: phosphate ion transmembrane transport3.57E-03
84GO:0006561: proline biosynthetic process3.57E-03
85GO:0009955: adaxial/abaxial pattern specification4.30E-03
86GO:0010067: procambium histogenesis4.30E-03
87GO:0006694: steroid biosynthetic process4.30E-03
88GO:1901259: chloroplast rRNA processing4.30E-03
89GO:0010189: vitamin E biosynthetic process4.30E-03
90GO:0010019: chloroplast-nucleus signaling pathway4.30E-03
91GO:0048444: floral organ morphogenesis4.30E-03
92GO:0009409: response to cold4.31E-03
93GO:0009395: phospholipid catabolic process5.07E-03
94GO:0010444: guard mother cell differentiation5.07E-03
95GO:0009735: response to cytokinin5.30E-03
96GO:0007155: cell adhesion5.89E-03
97GO:0030091: protein repair5.89E-03
98GO:0008610: lipid biosynthetic process5.89E-03
99GO:0009704: de-etiolation5.89E-03
100GO:0042255: ribosome assembly5.89E-03
101GO:2000070: regulation of response to water deprivation5.89E-03
102GO:0031540: regulation of anthocyanin biosynthetic process5.89E-03
103GO:0017004: cytochrome complex assembly6.76E-03
104GO:0009808: lignin metabolic process6.76E-03
105GO:0006002: fructose 6-phosphate metabolic process6.76E-03
106GO:0015996: chlorophyll catabolic process6.76E-03
107GO:0007186: G-protein coupled receptor signaling pathway6.76E-03
108GO:0010411: xyloglucan metabolic process6.87E-03
109GO:0042742: defense response to bacterium6.97E-03
110GO:0015780: nucleotide-sugar transport7.67E-03
111GO:0090305: nucleic acid phosphodiester bond hydrolysis7.67E-03
112GO:0010206: photosystem II repair7.67E-03
113GO:0034765: regulation of ion transmembrane transport7.67E-03
114GO:0090333: regulation of stomatal closure7.67E-03
115GO:0010205: photoinhibition8.61E-03
116GO:0042761: very long-chain fatty acid biosynthetic process8.61E-03
117GO:1900865: chloroplast RNA modification8.61E-03
118GO:0007623: circadian rhythm8.97E-03
119GO:0009688: abscisic acid biosynthetic process9.61E-03
120GO:0034599: cellular response to oxidative stress1.01E-02
121GO:0010015: root morphogenesis1.06E-02
122GO:0000038: very long-chain fatty acid metabolic process1.06E-02
123GO:0006816: calcium ion transport1.06E-02
124GO:0043085: positive regulation of catalytic activity1.06E-02
125GO:0009750: response to fructose1.06E-02
126GO:0018119: peptidyl-cysteine S-nitrosylation1.06E-02
127GO:0006820: anion transport1.17E-02
128GO:0045037: protein import into chloroplast stroma1.17E-02
129GO:0009725: response to hormone1.28E-02
130GO:0006094: gluconeogenesis1.28E-02
131GO:0005986: sucrose biosynthetic process1.28E-02
132GO:0006006: glucose metabolic process1.28E-02
133GO:0010229: inflorescence development1.28E-02
134GO:0042546: cell wall biogenesis1.30E-02
135GO:0009934: regulation of meristem structural organization1.40E-02
136GO:0048467: gynoecium development1.40E-02
137GO:0010143: cutin biosynthetic process1.40E-02
138GO:0010020: chloroplast fission1.40E-02
139GO:0009933: meristem structural organization1.40E-02
140GO:0010223: secondary shoot formation1.40E-02
141GO:0006412: translation1.44E-02
142GO:0005985: sucrose metabolic process1.51E-02
143GO:0071732: cellular response to nitric oxide1.51E-02
144GO:0070588: calcium ion transmembrane transport1.51E-02
145GO:0019762: glucosinolate catabolic process1.63E-02
146GO:0042023: DNA endoreduplication1.63E-02
147GO:0009736: cytokinin-activated signaling pathway1.69E-02
148GO:0006487: protein N-linked glycosylation1.76E-02
149GO:0000027: ribosomal large subunit assembly1.76E-02
150GO:0051302: regulation of cell division1.89E-02
151GO:0009768: photosynthesis, light harvesting in photosystem I1.89E-02
152GO:0031408: oxylipin biosynthetic process2.02E-02
153GO:0016998: cell wall macromolecule catabolic process2.02E-02
154GO:0019748: secondary metabolic process2.15E-02
155GO:0030245: cellulose catabolic process2.15E-02
156GO:0016226: iron-sulfur cluster assembly2.15E-02
157GO:0080092: regulation of pollen tube growth2.15E-02
158GO:0009294: DNA mediated transformation2.29E-02
159GO:0071369: cellular response to ethylene stimulus2.29E-02
160GO:0001944: vasculature development2.29E-02
161GO:0010089: xylem development2.43E-02
162GO:0010091: trichome branching2.43E-02
163GO:0042127: regulation of cell proliferation2.43E-02
164GO:0019722: calcium-mediated signaling2.43E-02
165GO:0009742: brassinosteroid mediated signaling pathway2.55E-02
166GO:0016117: carotenoid biosynthetic process2.57E-02
167GO:0042391: regulation of membrane potential2.72E-02
168GO:0000413: protein peptidyl-prolyl isomerization2.72E-02
169GO:0009741: response to brassinosteroid2.87E-02
170GO:0006662: glycerol ether metabolic process2.87E-02
171GO:0032259: methylation3.17E-02
172GO:0048825: cotyledon development3.18E-02
173GO:0016132: brassinosteroid biosynthetic process3.33E-02
174GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.33E-02
175GO:0000302: response to reactive oxygen species3.33E-02
176GO:0002229: defense response to oomycetes3.33E-02
177GO:0042744: hydrogen peroxide catabolic process3.43E-02
178GO:0032502: developmental process3.49E-02
179GO:0007264: small GTPase mediated signal transduction3.49E-02
180GO:1901657: glycosyl compound metabolic process3.66E-02
181GO:0071281: cellular response to iron ion3.66E-02
182GO:0006633: fatty acid biosynthetic process3.78E-02
183GO:0010252: auxin homeostasis3.82E-02
184GO:0071805: potassium ion transmembrane transport3.99E-02
185GO:0007267: cell-cell signaling3.99E-02
186GO:0016126: sterol biosynthetic process4.33E-02
187GO:0009627: systemic acquired resistance4.68E-02
188GO:0042128: nitrate assimilation4.68E-02
189GO:0015995: chlorophyll biosynthetic process4.86E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0015136: sialic acid transmembrane transporter activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
14GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
15GO:1990534: thermospermine oxidase activity0.00E+00
16GO:0051920: peroxiredoxin activity3.32E-08
17GO:0019843: rRNA binding9.96E-08
18GO:0016209: antioxidant activity1.18E-07
19GO:0005528: FK506 binding1.36E-04
20GO:0016788: hydrolase activity, acting on ester bonds1.57E-04
21GO:0051753: mannan synthase activity2.15E-04
22GO:0052689: carboxylic ester hydrolase activity3.04E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.32E-04
24GO:0000170: sphingosine hydroxylase activity3.32E-04
25GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.32E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.32E-04
27GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.32E-04
28GO:0019210: kinase inhibitor activity3.32E-04
29GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.70E-04
30GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.31E-04
31GO:0004617: phosphoglycerate dehydrogenase activity7.24E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.24E-04
33GO:0042284: sphingolipid delta-4 desaturase activity7.24E-04
34GO:0000234: phosphoethanolamine N-methyltransferase activity7.24E-04
35GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.24E-04
36GO:0008967: phosphoglycolate phosphatase activity7.24E-04
37GO:0047746: chlorophyllase activity7.24E-04
38GO:0042389: omega-3 fatty acid desaturase activity7.24E-04
39GO:0004601: peroxidase activity7.84E-04
40GO:0016168: chlorophyll binding8.09E-04
41GO:0004089: carbonate dehydratase activity1.06E-03
42GO:0008289: lipid binding1.07E-03
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.17E-03
44GO:0050734: hydroxycinnamoyltransferase activity1.17E-03
45GO:0070402: NADPH binding1.17E-03
46GO:0001872: (1->3)-beta-D-glucan binding1.68E-03
47GO:0003999: adenine phosphoribosyltransferase activity1.68E-03
48GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.68E-03
49GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.68E-03
50GO:0004550: nucleoside diphosphate kinase activity1.68E-03
51GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.26E-03
52GO:0052793: pectin acetylesterase activity2.26E-03
53GO:0004506: squalene monooxygenase activity2.26E-03
54GO:0004392: heme oxygenase (decyclizing) activity2.26E-03
55GO:0043495: protein anchor2.26E-03
56GO:0015120: phosphoglycerate transmembrane transporter activity2.26E-03
57GO:0004659: prenyltransferase activity2.26E-03
58GO:0022891: substrate-specific transmembrane transporter activity2.38E-03
59GO:0008381: mechanically-gated ion channel activity2.89E-03
60GO:0009922: fatty acid elongase activity2.89E-03
61GO:0004040: amidase activity2.89E-03
62GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.00E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity3.57E-03
64GO:0004130: cytochrome-c peroxidase activity3.57E-03
65GO:0016688: L-ascorbate peroxidase activity3.57E-03
66GO:0003735: structural constituent of ribosome3.58E-03
67GO:0016762: xyloglucan:xyloglucosyl transferase activity4.03E-03
68GO:0005242: inward rectifier potassium channel activity4.30E-03
69GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.30E-03
70GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.30E-03
71GO:0016759: cellulose synthase activity4.88E-03
72GO:0005338: nucleotide-sugar transmembrane transporter activity5.07E-03
73GO:0019899: enzyme binding5.07E-03
74GO:0052747: sinapyl alcohol dehydrogenase activity5.89E-03
75GO:0004033: aldo-keto reductase (NADP) activity5.89E-03
76GO:0016798: hydrolase activity, acting on glycosyl bonds6.87E-03
77GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.67E-03
78GO:0004222: metalloendopeptidase activity8.40E-03
79GO:0030234: enzyme regulator activity9.61E-03
80GO:0008047: enzyme activator activity9.61E-03
81GO:0009055: electron carrier activity9.94E-03
82GO:0005089: Rho guanyl-nucleotide exchange factor activity1.06E-02
83GO:0015386: potassium:proton antiporter activity1.06E-02
84GO:0045551: cinnamyl-alcohol dehydrogenase activity1.17E-02
85GO:0042802: identical protein binding1.22E-02
86GO:0004185: serine-type carboxypeptidase activity1.25E-02
87GO:0005516: calmodulin binding1.26E-02
88GO:0031072: heat shock protein binding1.28E-02
89GO:0005262: calcium channel activity1.28E-02
90GO:0015114: phosphate ion transmembrane transporter activity1.28E-02
91GO:0004565: beta-galactosidase activity1.28E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.28E-02
93GO:0008131: primary amine oxidase activity1.40E-02
94GO:0008266: poly(U) RNA binding1.40E-02
95GO:0051287: NAD binding1.51E-02
96GO:0031409: pigment binding1.63E-02
97GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.63E-02
98GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.63E-02
99GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.63E-02
100GO:0003690: double-stranded DNA binding1.75E-02
101GO:0051536: iron-sulfur cluster binding1.76E-02
102GO:0015079: potassium ion transmembrane transporter activity1.89E-02
103GO:0004176: ATP-dependent peptidase activity2.02E-02
104GO:0033612: receptor serine/threonine kinase binding2.02E-02
105GO:0030570: pectate lyase activity2.29E-02
106GO:0008810: cellulase activity2.29E-02
107GO:0008514: organic anion transmembrane transporter activity2.43E-02
108GO:0003727: single-stranded RNA binding2.43E-02
109GO:0005102: receptor binding2.57E-02
110GO:0047134: protein-disulfide reductase activity2.57E-02
111GO:0005249: voltage-gated potassium channel activity2.72E-02
112GO:0030551: cyclic nucleotide binding2.72E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.02E-02
114GO:0050662: coenzyme binding3.02E-02
115GO:0046872: metal ion binding3.13E-02
116GO:0004872: receptor activity3.18E-02
117GO:0048038: quinone binding3.33E-02
118GO:0004518: nuclease activity3.49E-02
119GO:0000156: phosphorelay response regulator activity3.66E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.66E-02
121GO:0015297: antiporter activity3.96E-02
122GO:0016722: oxidoreductase activity, oxidizing metal ions3.99E-02
123GO:0008237: metallopeptidase activity3.99E-02
124GO:0016597: amino acid binding4.16E-02
125GO:0008375: acetylglucosaminyltransferase activity4.68E-02
126GO:0009931: calcium-dependent protein serine/threonine kinase activity4.68E-02
127GO:0004683: calmodulin-dependent protein kinase activity4.86E-02
128GO:0102483: scopolin beta-glucosidase activity4.86E-02
129GO:0030247: polysaccharide binding4.86E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast1.14E-24
3GO:0009535: chloroplast thylakoid membrane5.84E-20
4GO:0048046: apoplast2.38E-14
5GO:0009941: chloroplast envelope3.75E-13
6GO:0009534: chloroplast thylakoid4.10E-12
7GO:0009579: thylakoid4.99E-11
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.08E-09
9GO:0009570: chloroplast stroma3.17E-09
10GO:0009543: chloroplast thylakoid lumen5.02E-09
11GO:0046658: anchored component of plasma membrane7.49E-08
12GO:0031225: anchored component of membrane2.35E-06
13GO:0010319: stromule3.10E-06
14GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.32E-04
15GO:0009923: fatty acid elongase complex3.32E-04
16GO:0016021: integral component of membrane3.43E-04
17GO:0042170: plastid membrane7.24E-04
18GO:0005840: ribosome7.76E-04
19GO:0009706: chloroplast inner membrane8.00E-04
20GO:0031969: chloroplast membrane1.14E-03
21GO:0009528: plastid inner membrane1.17E-03
22GO:0005853: eukaryotic translation elongation factor 1 complex1.17E-03
23GO:0005886: plasma membrane1.23E-03
24GO:0031977: thylakoid lumen1.76E-03
25GO:0009654: photosystem II oxygen evolving complex1.82E-03
26GO:0042651: thylakoid membrane1.82E-03
27GO:0009527: plastid outer membrane2.26E-03
28GO:0019898: extrinsic component of membrane3.76E-03
29GO:0009523: photosystem II3.76E-03
30GO:0016020: membrane3.91E-03
31GO:0009533: chloroplast stromal thylakoid5.07E-03
32GO:0010287: plastoglobule5.55E-03
33GO:0005576: extracellular region6.53E-03
34GO:0005618: cell wall7.32E-03
35GO:0005763: mitochondrial small ribosomal subunit7.67E-03
36GO:0015934: large ribosomal subunit8.81E-03
37GO:0016324: apical plasma membrane9.61E-03
38GO:0009536: plastid1.04E-02
39GO:0009505: plant-type cell wall1.08E-02
40GO:0000139: Golgi membrane1.26E-02
41GO:0030095: chloroplast photosystem II1.40E-02
42GO:0030076: light-harvesting complex1.51E-02
43GO:0005875: microtubule associated complex1.63E-02
44GO:0005758: mitochondrial intermembrane space1.76E-02
45GO:0009532: plastid stroma2.02E-02
46GO:0009522: photosystem I3.02E-02
47GO:0005615: extracellular space4.63E-02
Gene type



Gene DE type