Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G34300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010398: xylogalacturonan metabolic process0.00E+00
2GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
3GO:0080056: petal vascular tissue pattern formation0.00E+00
4GO:0019484: beta-alanine catabolic process0.00E+00
5GO:0006105: succinate metabolic process0.00E+00
6GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
7GO:0080057: sepal vascular tissue pattern formation0.00E+00
8GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
9GO:0090630: activation of GTPase activity1.07E-05
10GO:0007029: endoplasmic reticulum organization7.01E-05
11GO:0000380: alternative mRNA splicing, via spliceosome7.01E-05
12GO:0046323: glucose import2.10E-04
13GO:0046686: response to cadmium ion2.19E-04
14GO:0046167: glycerol-3-phosphate biosynthetic process2.53E-04
15GO:0035266: meristem growth2.53E-04
16GO:0009450: gamma-aminobutyric acid catabolic process2.53E-04
17GO:0007292: female gamete generation2.53E-04
18GO:1990641: response to iron ion starvation2.53E-04
19GO:0009865: pollen tube adhesion2.53E-04
20GO:1902265: abscisic acid homeostasis2.53E-04
21GO:0006540: glutamate decarboxylation to succinate2.53E-04
22GO:0031338: regulation of vesicle fusion2.53E-04
23GO:0009257: 10-formyltetrahydrofolate biosynthetic process5.59E-04
24GO:0006611: protein export from nucleus5.59E-04
25GO:0010033: response to organic substance5.59E-04
26GO:0006641: triglyceride metabolic process5.59E-04
27GO:0006101: citrate metabolic process5.59E-04
28GO:0007584: response to nutrient5.59E-04
29GO:0051788: response to misfolded protein5.59E-04
30GO:0034398: telomere tethering at nuclear periphery5.59E-04
31GO:0006499: N-terminal protein myristoylation7.26E-04
32GO:0010043: response to zinc ion7.70E-04
33GO:0045087: innate immune response8.63E-04
34GO:0000055: ribosomal large subunit export from nucleus9.07E-04
35GO:0042256: mature ribosome assembly9.07E-04
36GO:0060968: regulation of gene silencing9.07E-04
37GO:0042344: indole glucosinolate catabolic process9.07E-04
38GO:0006954: inflammatory response9.07E-04
39GO:0019563: glycerol catabolic process9.07E-04
40GO:0006406: mRNA export from nucleus1.12E-03
41GO:0006882: cellular zinc ion homeostasis1.29E-03
42GO:0019438: aromatic compound biosynthetic process1.29E-03
43GO:0006624: vacuolar protein processing1.29E-03
44GO:0006020: inositol metabolic process1.29E-03
45GO:0009113: purine nucleobase biosynthetic process1.29E-03
46GO:0006072: glycerol-3-phosphate metabolic process1.29E-03
47GO:0051601: exocyst localization1.29E-03
48GO:0015749: monosaccharide transport1.29E-03
49GO:0009399: nitrogen fixation1.29E-03
50GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery1.29E-03
51GO:0035428: hexose transmembrane transport1.48E-03
52GO:0071215: cellular response to abscisic acid stimulus1.61E-03
53GO:0009651: response to salt stress1.70E-03
54GO:0006542: glutamine biosynthetic process1.73E-03
55GO:0006646: phosphatidylethanolamine biosynthetic process1.73E-03
56GO:0009687: abscisic acid metabolic process1.73E-03
57GO:0015743: malate transport1.73E-03
58GO:0010107: potassium ion import1.73E-03
59GO:1902584: positive regulation of response to water deprivation1.73E-03
60GO:0006536: glutamate metabolic process1.73E-03
61GO:0042273: ribosomal large subunit biogenesis1.73E-03
62GO:0010188: response to microbial phytotoxin1.73E-03
63GO:0006878: cellular copper ion homeostasis1.73E-03
64GO:0009409: response to cold1.79E-03
65GO:0051028: mRNA transport1.90E-03
66GO:0006970: response to osmotic stress2.17E-03
67GO:0043097: pyrimidine nucleoside salvage2.21E-03
68GO:0006090: pyruvate metabolic process2.21E-03
69GO:0048367: shoot system development2.22E-03
70GO:0048544: recognition of pollen2.37E-03
71GO:0006635: fatty acid beta-oxidation2.72E-03
72GO:0048827: phyllome development2.72E-03
73GO:0048232: male gamete generation2.72E-03
74GO:0043248: proteasome assembly2.72E-03
75GO:0042732: D-xylose metabolic process2.72E-03
76GO:0006206: pyrimidine nucleobase metabolic process2.72E-03
77GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.72E-03
78GO:0010044: response to aluminum ion3.86E-03
79GO:0098869: cellular oxidant detoxification3.86E-03
80GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.86E-03
81GO:0006333: chromatin assembly or disassembly3.86E-03
82GO:0071669: plant-type cell wall organization or biogenesis3.86E-03
83GO:0009396: folic acid-containing compound biosynthetic process3.86E-03
84GO:0001666: response to hypoxia3.92E-03
85GO:0006102: isocitrate metabolic process4.48E-03
86GO:0016559: peroxisome fission4.48E-03
87GO:0009061: anaerobic respiration4.48E-03
88GO:0009819: drought recovery4.48E-03
89GO:0006605: protein targeting4.48E-03
90GO:0009415: response to water4.48E-03
91GO:0010078: maintenance of root meristem identity4.48E-03
92GO:0032508: DNA duplex unwinding4.48E-03
93GO:0006491: N-glycan processing4.48E-03
94GO:0048573: photoperiodism, flowering4.61E-03
95GO:0030968: endoplasmic reticulum unfolded protein response5.13E-03
96GO:0009808: lignin metabolic process5.13E-03
97GO:0060321: acceptance of pollen5.13E-03
98GO:0001510: RNA methylation5.13E-03
99GO:0009051: pentose-phosphate shunt, oxidative branch5.81E-03
100GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay5.81E-03
101GO:0006098: pentose-phosphate shunt5.81E-03
102GO:0046916: cellular transition metal ion homeostasis5.81E-03
103GO:0010119: regulation of stomatal movement5.91E-03
104GO:0035999: tetrahydrofolate interconversion6.52E-03
105GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.52E-03
106GO:0008202: steroid metabolic process6.52E-03
107GO:0006099: tricarboxylic acid cycle6.77E-03
108GO:0048829: root cap development7.26E-03
109GO:0006298: mismatch repair7.26E-03
110GO:0009970: cellular response to sulfate starvation7.26E-03
111GO:0009870: defense response signaling pathway, resistance gene-dependent7.26E-03
112GO:0006535: cysteine biosynthetic process from serine7.26E-03
113GO:0006995: cellular response to nitrogen starvation7.26E-03
114GO:0042542: response to hydrogen peroxide8.02E-03
115GO:0010015: root morphogenesis8.04E-03
116GO:0009682: induced systemic resistance8.04E-03
117GO:0052544: defense response by callose deposition in cell wall8.04E-03
118GO:0071365: cellular response to auxin stimulus8.83E-03
119GO:0006807: nitrogen compound metabolic process9.66E-03
120GO:0010588: cotyledon vascular tissue pattern formation9.66E-03
121GO:2000012: regulation of auxin polar transport9.66E-03
122GO:0010102: lateral root morphogenesis9.66E-03
123GO:0006108: malate metabolic process9.66E-03
124GO:0007034: vacuolar transport1.05E-02
125GO:0006541: glutamine metabolic process1.05E-02
126GO:0002237: response to molecule of bacterial origin1.05E-02
127GO:0042742: defense response to bacterium1.05E-02
128GO:0009933: meristem structural organization1.05E-02
129GO:0009723: response to ethylene1.13E-02
130GO:0090351: seedling development1.14E-02
131GO:0010030: positive regulation of seed germination1.14E-02
132GO:0009969: xyloglucan biosynthetic process1.14E-02
133GO:0007031: peroxisome organization1.14E-02
134GO:0005985: sucrose metabolic process1.14E-02
135GO:0000162: tryptophan biosynthetic process1.23E-02
136GO:0034976: response to endoplasmic reticulum stress1.23E-02
137GO:0080167: response to karrikin1.24E-02
138GO:0035556: intracellular signal transduction1.26E-02
139GO:0009733: response to auxin1.29E-02
140GO:0019344: cysteine biosynthetic process1.32E-02
141GO:0006289: nucleotide-excision repair1.32E-02
142GO:0006825: copper ion transport1.42E-02
143GO:0009695: jasmonic acid biosynthetic process1.42E-02
144GO:0009626: plant-type hypersensitive response1.42E-02
145GO:0051260: protein homooligomerization1.52E-02
146GO:0031408: oxylipin biosynthetic process1.52E-02
147GO:0009269: response to desiccation1.52E-02
148GO:0071456: cellular response to hypoxia1.62E-02
149GO:0030433: ubiquitin-dependent ERAD pathway1.62E-02
150GO:0010227: floral organ abscission1.72E-02
151GO:0006012: galactose metabolic process1.72E-02
152GO:0009306: protein secretion1.83E-02
153GO:0010501: RNA secondary structure unwinding2.05E-02
154GO:0000413: protein peptidyl-prolyl isomerization2.05E-02
155GO:0010051: xylem and phloem pattern formation2.05E-02
156GO:0010118: stomatal movement2.05E-02
157GO:0006606: protein import into nucleus2.05E-02
158GO:0042631: cellular response to water deprivation2.05E-02
159GO:0000271: polysaccharide biosynthetic process2.05E-02
160GO:0080022: primary root development2.05E-02
161GO:0042391: regulation of membrane potential2.05E-02
162GO:0048364: root development2.14E-02
163GO:0010305: leaf vascular tissue pattern formation2.16E-02
164GO:0010182: sugar mediated signaling pathway2.16E-02
165GO:0006520: cellular amino acid metabolic process2.16E-02
166GO:0045489: pectin biosynthetic process2.16E-02
167GO:0010154: fruit development2.16E-02
168GO:0009646: response to absence of light2.27E-02
169GO:0008654: phospholipid biosynthetic process2.39E-02
170GO:0010183: pollen tube guidance2.39E-02
171GO:0006633: fatty acid biosynthetic process2.54E-02
172GO:0032502: developmental process2.63E-02
173GO:0007264: small GTPase mediated signal transduction2.63E-02
174GO:0010583: response to cyclopentenone2.63E-02
175GO:0071281: cellular response to iron ion2.75E-02
176GO:0009873: ethylene-activated signaling pathway2.79E-02
177GO:0007623: circadian rhythm2.79E-02
178GO:0010150: leaf senescence2.79E-02
179GO:0019760: glucosinolate metabolic process2.87E-02
180GO:0006904: vesicle docking involved in exocytosis3.00E-02
181GO:0010286: heat acclimation3.00E-02
182GO:0051607: defense response to virus3.13E-02
183GO:0006468: protein phosphorylation3.18E-02
184GO:0009617: response to bacterium3.33E-02
185GO:0009816: defense response to bacterium, incompatible interaction3.39E-02
186GO:0042128: nitrate assimilation3.52E-02
187GO:0006950: response to stress3.66E-02
188GO:0009735: response to cytokinin3.71E-02
189GO:0009737: response to abscisic acid3.78E-02
190GO:0016049: cell growth3.80E-02
191GO:0008219: cell death3.93E-02
192GO:0030244: cellulose biosynthetic process3.93E-02
193GO:0009817: defense response to fungus, incompatible interaction3.93E-02
194GO:0048767: root hair elongation4.08E-02
195GO:0009832: plant-type cell wall biogenesis4.08E-02
196GO:0010311: lateral root formation4.08E-02
197GO:0009834: plant-type secondary cell wall biogenesis4.22E-02
198GO:0006811: ion transport4.22E-02
199GO:0009910: negative regulation of flower development4.36E-02
200GO:0009631: cold acclimation4.36E-02
201GO:0009860: pollen tube growth4.63E-02
202GO:0016051: carbohydrate biosynthetic process4.66E-02
203GO:0016310: phosphorylation4.76E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
3GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
4GO:0009045: xylose isomerase activity0.00E+00
5GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
6GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
7GO:0004370: glycerol kinase activity0.00E+00
8GO:0050897: cobalt ion binding7.90E-05
9GO:0009679: hexose:proton symporter activity2.53E-04
10GO:0035671: enone reductase activity2.53E-04
11GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.53E-04
12GO:0046870: cadmium ion binding2.53E-04
13GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.53E-04
14GO:0003867: 4-aminobutyrate transaminase activity2.53E-04
15GO:0005507: copper ion binding4.21E-04
16GO:0004353: glutamate dehydrogenase [NAD(P)+] activity5.59E-04
17GO:0032791: lead ion binding5.59E-04
18GO:0004609: phosphatidylserine decarboxylase activity5.59E-04
19GO:0003994: aconitate hydratase activity5.59E-04
20GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity5.59E-04
21GO:0004477: methenyltetrahydrofolate cyclohydrolase activity5.59E-04
22GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity5.59E-04
23GO:0004839: ubiquitin activating enzyme activity5.59E-04
24GO:0004329: formate-tetrahydrofolate ligase activity5.59E-04
25GO:0019200: carbohydrate kinase activity5.59E-04
26GO:0047209: coniferyl-alcohol glucosyltransferase activity5.59E-04
27GO:0004352: glutamate dehydrogenase (NAD+) activity5.59E-04
28GO:0004096: catalase activity9.07E-04
29GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity9.07E-04
30GO:0005047: signal recognition particle binding9.07E-04
31GO:0019829: cation-transporting ATPase activity9.07E-04
32GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.07E-04
33GO:0043023: ribosomal large subunit binding1.29E-03
34GO:0004165: dodecenoyl-CoA delta-isomerase activity1.29E-03
35GO:0004300: enoyl-CoA hydratase activity1.29E-03
36GO:0048027: mRNA 5'-UTR binding1.29E-03
37GO:0004108: citrate (Si)-synthase activity1.29E-03
38GO:0030527: structural constituent of chromatin1.29E-03
39GO:0005524: ATP binding1.29E-03
40GO:0004834: tryptophan synthase activity1.73E-03
41GO:0004737: pyruvate decarboxylase activity1.73E-03
42GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.73E-03
43GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.73E-03
44GO:0004470: malic enzyme activity1.73E-03
45GO:0005253: anion channel activity1.73E-03
46GO:0016004: phospholipase activator activity1.73E-03
47GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.73E-03
48GO:0003729: mRNA binding2.20E-03
49GO:0004356: glutamate-ammonia ligase activity2.21E-03
50GO:0010294: abscisic acid glucosyltransferase activity2.21E-03
51GO:0015145: monosaccharide transmembrane transporter activity2.21E-03
52GO:0008641: small protein activating enzyme activity2.21E-03
53GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.21E-03
54GO:0008948: oxaloacetate decarboxylase activity2.21E-03
55GO:0017137: Rab GTPase binding2.21E-03
56GO:0016301: kinase activity2.22E-03
57GO:0005355: glucose transmembrane transporter activity2.37E-03
58GO:0030976: thiamine pyrophosphate binding2.72E-03
59GO:0019137: thioglucosidase activity2.72E-03
60GO:0035252: UDP-xylosyltransferase activity2.72E-03
61GO:0036402: proteasome-activating ATPase activity2.72E-03
62GO:0004124: cysteine synthase activity3.27E-03
63GO:0051753: mannan synthase activity3.27E-03
64GO:0004849: uridine kinase activity3.27E-03
65GO:0003730: mRNA 3'-UTR binding3.27E-03
66GO:0070300: phosphatidic acid binding3.27E-03
67GO:0004602: glutathione peroxidase activity3.27E-03
68GO:0003950: NAD+ ADP-ribosyltransferase activity3.27E-03
69GO:0004620: phospholipase activity3.86E-03
70GO:0016831: carboxy-lyase activity3.86E-03
71GO:0015140: malate transmembrane transporter activity3.86E-03
72GO:0015288: porin activity4.48E-03
73GO:0005337: nucleoside transmembrane transporter activity4.48E-03
74GO:0004034: aldose 1-epimerase activity4.48E-03
75GO:0004525: ribonuclease III activity4.48E-03
76GO:0017056: structural constituent of nuclear pore4.48E-03
77GO:0015144: carbohydrate transmembrane transporter activity4.50E-03
78GO:0005267: potassium channel activity5.13E-03
79GO:0005375: copper ion transmembrane transporter activity5.13E-03
80GO:0005351: sugar:proton symporter activity5.24E-03
81GO:0005096: GTPase activator activity5.37E-03
82GO:0003697: single-stranded DNA binding6.48E-03
83GO:0047617: acyl-CoA hydrolase activity6.52E-03
84GO:0009672: auxin:proton symporter activity6.52E-03
85GO:0005487: nucleocytoplasmic transporter activity6.52E-03
86GO:0008422: beta-glucosidase activity7.07E-03
87GO:0008171: O-methyltransferase activity7.26E-03
88GO:0015020: glucuronosyltransferase activity7.26E-03
89GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.32E-03
90GO:0004177: aminopeptidase activity8.04E-03
91GO:0047372: acylglycerol lipase activity8.04E-03
92GO:0004521: endoribonuclease activity8.83E-03
93GO:0000976: transcription regulatory region sequence-specific DNA binding8.83E-03
94GO:0005509: calcium ion binding9.14E-03
95GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.66E-03
96GO:0008139: nuclear localization sequence binding9.66E-03
97GO:0004175: endopeptidase activity1.05E-02
98GO:0030552: cAMP binding1.14E-02
99GO:0030553: cGMP binding1.14E-02
100GO:0017025: TBP-class protein binding1.14E-02
101GO:0005216: ion channel activity1.42E-02
102GO:0043424: protein histidine kinase binding1.42E-02
103GO:0080043: quercetin 3-O-glucosyltransferase activity1.47E-02
104GO:0080044: quercetin 7-O-glucosyltransferase activity1.47E-02
105GO:0019706: protein-cysteine S-palmitoyltransferase activity1.52E-02
106GO:0004707: MAP kinase activity1.52E-02
107GO:0016760: cellulose synthase (UDP-forming) activity1.72E-02
108GO:0004722: protein serine/threonine phosphatase activity1.75E-02
109GO:0003756: protein disulfide isomerase activity1.83E-02
110GO:0005249: voltage-gated potassium channel activity2.05E-02
111GO:0030551: cyclic nucleotide binding2.05E-02
112GO:0030170: pyridoxal phosphate binding2.24E-02
113GO:0010181: FMN binding2.27E-02
114GO:0004197: cysteine-type endopeptidase activity2.63E-02
115GO:0016759: cellulose synthase activity2.87E-02
116GO:0003684: damaged DNA binding2.87E-02
117GO:0016791: phosphatase activity2.87E-02
118GO:0008194: UDP-glycosyltransferase activity3.12E-02
119GO:0008375: acetylglucosaminyltransferase activity3.52E-02
120GO:0009931: calcium-dependent protein serine/threonine kinase activity3.52E-02
121GO:0030247: polysaccharide binding3.66E-02
122GO:0004683: calmodulin-dependent protein kinase activity3.66E-02
123GO:0102483: scopolin beta-glucosidase activity3.66E-02
124GO:0004721: phosphoprotein phosphatase activity3.66E-02
125GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.80E-02
126GO:0005215: transporter activity3.84E-02
127GO:0046982: protein heterodimerization activity4.22E-02
128GO:0030145: manganese ion binding4.36E-02
129GO:0000149: SNARE binding4.95E-02
RankGO TermAdjusted P value
1GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0071942: XPC complex0.00E+00
4GO:0005777: peroxisome7.50E-07
5GO:0005886: plasma membrane2.63E-06
6GO:0005794: Golgi apparatus8.26E-05
7GO:0005829: cytosol9.28E-05
8GO:0009506: plasmodesma4.10E-04
9GO:0032777: Piccolo NuA4 histone acetyltransferase complex5.59E-04
10GO:0005774: vacuolar membrane6.58E-04
11GO:0044614: nuclear pore cytoplasmic filaments9.07E-04
12GO:0042406: extrinsic component of endoplasmic reticulum membrane9.07E-04
13GO:0000323: lytic vacuole1.29E-03
14GO:0005783: endoplasmic reticulum1.82E-03
15GO:0005773: vacuole2.14E-03
16GO:0031965: nuclear membrane2.54E-03
17GO:0005768: endosome2.57E-03
18GO:0005618: cell wall2.62E-03
19GO:0016021: integral component of membrane2.63E-03
20GO:0031597: cytosolic proteasome complex3.27E-03
21GO:0000815: ESCRT III complex3.27E-03
22GO:0030173: integral component of Golgi membrane3.27E-03
23GO:0016363: nuclear matrix3.27E-03
24GO:0031595: nuclear proteasome complex3.86E-03
25GO:0030687: preribosome, large subunit precursor3.86E-03
26GO:0016020: membrane4.41E-03
27GO:0030131: clathrin adaptor complex4.48E-03
28GO:0005779: integral component of peroxisomal membrane5.13E-03
29GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.13E-03
30GO:0009705: plant-type vacuole membrane5.40E-03
31GO:0048046: apoplast5.72E-03
32GO:0000786: nucleosome6.19E-03
33GO:0008540: proteasome regulatory particle, base subcomplex6.52E-03
34GO:0005802: trans-Golgi network7.00E-03
35GO:0030125: clathrin vesicle coat7.26E-03
36GO:0010008: endosome membrane1.38E-02
37GO:0005905: clathrin-coated pit1.52E-02
38GO:0000139: Golgi membrane1.77E-02
39GO:0043231: intracellular membrane-bounded organelle2.29E-02
40GO:0000145: exocyst2.63E-02
41GO:0000785: chromatin2.63E-02
42GO:0005778: peroxisomal membrane3.00E-02
Gene type



Gene DE type