co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G33600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043171: peptide catabolic process	0.00E+00
2	GO:0010219: regulation of vernalization response	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	1.45E-11
7	GO:0018298: protein-chromophore linkage	4.49E-09
8	GO:0009645: response to low light intensity stimulus	4.27E-06
9	GO:0009769: photosynthesis, light harvesting in photosystem II	4.27E-06
10	GO:0010218: response to far red light	5.56E-06
11	GO:0009416: response to light stimulus	6.61E-06
12	GO:0009409: response to cold	9.05E-06
13	GO:0009644: response to high light intensity	1.82E-05
14	GO:0007623: circadian rhythm	2.57E-05
15	GO:0010600: regulation of auxin biosynthetic process	5.13E-05
16	GO:0043097: pyrimidine nucleoside salvage	8.14E-05
17	GO:0000380: alternative mRNA splicing, via spliceosome	8.14E-05
18	GO:0006206: pyrimidine nucleobase metabolic process	1.18E-04
19	GO:0009637: response to blue light	1.19E-04
20	GO:0080167: response to karrikin	1.33E-04
21	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.62E-04
22	GO:0042542: response to hydrogen peroxide	1.73E-04
23	GO:0015979: photosynthesis	1.81E-04
24	GO:0010114: response to red light	1.86E-04
25	GO:0010928: regulation of auxin mediated signaling pathway	2.69E-04
26	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.77E-04
27	GO:1902265: abscisic acid homeostasis	2.77E-04
28	GO:0015812: gamma-aminobutyric acid transport	2.77E-04
29	GO:0032958: inositol phosphate biosynthetic process	2.77E-04
30	GO:0006369: termination of RNA polymerase II transcription	2.77E-04
31	GO:1990641: response to iron ion starvation	2.77E-04
32	GO:0010286: heat acclimation	4.66E-04
33	GO:1902884: positive regulation of response to oxidative stress	6.09E-04
34	GO:0006101: citrate metabolic process	6.09E-04
35	GO:0051170: nuclear import	6.09E-04
36	GO:0030003: cellular cation homeostasis	6.09E-04
37	GO:0006883: cellular sodium ion homeostasis	6.09E-04
38	GO:0048833: specification of floral organ number	6.09E-04
39	GO:0009737: response to abscisic acid	7.50E-04
40	GO:0009817: defense response to fungus, incompatible interaction	7.57E-04
41	GO:0042344: indole glucosinolate catabolic process	9.88E-04
42	GO:0006954: inflammatory response	9.88E-04
43	GO:0006598: polyamine catabolic process	9.88E-04
44	GO:1901562: response to paraquat	9.88E-04
45	GO:0006278: RNA-dependent DNA biosynthetic process	9.88E-04
46	GO:0042780: tRNA 3'-end processing	9.88E-04
47	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	9.88E-04
48	GO:0042256: mature ribosome assembly	9.88E-04
49	GO:1902448: positive regulation of shade avoidance	9.88E-04
50	GO:0044211: CTP salvage	1.41E-03
51	GO:0015749: monosaccharide transport	1.41E-03
52	GO:1901332: negative regulation of lateral root development	1.41E-03
53	GO:0009963: positive regulation of flavonoid biosynthetic process	1.41E-03
54	GO:0006020: inositol metabolic process	1.41E-03
55	GO:0010601: positive regulation of auxin biosynthetic process	1.41E-03
56	GO:0008643: carbohydrate transport	1.54E-03
57	GO:0048511: rhythmic process	1.54E-03
58	GO:0010017: red or far-red light signaling pathway	1.68E-03
59	GO:0071215: cellular response to abscisic acid stimulus	1.83E-03
60	GO:1901002: positive regulation of response to salt stress	1.89E-03
61	GO:0030104: water homeostasis	1.89E-03
62	GO:0044206: UMP salvage	1.89E-03
63	GO:0006646: phosphatidylethanolamine biosynthetic process	1.89E-03
64	GO:0009687: abscisic acid metabolic process	1.89E-03
65	GO:0015743: malate transport	1.89E-03
66	GO:0048442: sepal development	1.89E-03
67	GO:0009765: photosynthesis, light harvesting	1.89E-03
68	GO:0009585: red, far-red light phototransduction	2.03E-03
69	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.41E-03
70	GO:0006814: sodium ion transport	2.70E-03
71	GO:0045040: protein import into mitochondrial outer membrane	2.98E-03
72	GO:0000741: karyogamy	2.98E-03
73	GO:0009635: response to herbicide	2.98E-03
74	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.98E-03
75	GO:0042732: D-xylose metabolic process	2.98E-03
76	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.58E-03
77	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.58E-03
78	GO:0009414: response to water deprivation	3.93E-03
79	GO:0048437: floral organ development	4.23E-03
80	GO:0010044: response to aluminum ion	4.23E-03
81	GO:0010161: red light signaling pathway	4.23E-03
82	GO:0035556: intracellular signal transduction	4.26E-03
83	GO:0009819: drought recovery	4.90E-03
84	GO:0009415: response to water	4.90E-03
85	GO:0010078: maintenance of root meristem identity	4.90E-03
86	GO:0009704: de-etiolation	4.90E-03
87	GO:0032508: DNA duplex unwinding	4.90E-03
88	GO:0006102: isocitrate metabolic process	4.90E-03
89	GO:0009061: anaerobic respiration	4.90E-03
90	GO:0048573: photoperiodism, flowering	5.26E-03
91	GO:0006950: response to stress	5.26E-03
92	GO:0009827: plant-type cell wall modification	5.62E-03
93	GO:0001510: RNA methylation	5.62E-03
94	GO:0010099: regulation of photomorphogenesis	5.62E-03
95	GO:0000160: phosphorelay signal transduction system	6.13E-03
96	GO:0006098: pentose-phosphate shunt	6.37E-03
97	GO:0090333: regulation of stomatal closure	6.37E-03
98	GO:0046916: cellular transition metal ion homeostasis	6.37E-03
99	GO:0006811: ion transport	6.43E-03
100	GO:0010119: regulation of stomatal movement	6.75E-03
101	GO:0010043: response to zinc ion	6.75E-03
102	GO:0030042: actin filament depolymerization	7.15E-03
103	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.15E-03
104	GO:0045087: innate immune response	7.40E-03
105	GO:0055062: phosphate ion homeostasis	7.97E-03
106	GO:0009970: cellular response to sulfate starvation	7.97E-03
107	GO:0006995: cellular response to nitrogen starvation	7.97E-03
108	GO:0048441: petal development	7.97E-03
109	GO:0009641: shade avoidance	7.97E-03
110	GO:0010468: regulation of gene expression	8.01E-03
111	GO:0006355: regulation of transcription, DNA-templated	8.57E-03
112	GO:0006816: calcium ion transport	8.82E-03
113	GO:0009682: induced systemic resistance	8.82E-03
114	GO:0052544: defense response by callose deposition in cell wall	8.82E-03
115	GO:0009640: photomorphogenesis	9.55E-03
116	GO:0051707: response to other organism	9.55E-03
117	GO:0016925: protein sumoylation	9.70E-03
118	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.06E-02
119	GO:2000012: regulation of auxin polar transport	1.06E-02
120	GO:0006626: protein targeting to mitochondrion	1.06E-02
121	GO:0050826: response to freezing	1.06E-02
122	GO:0009718: anthocyanin-containing compound biosynthetic process	1.06E-02
123	GO:0048440: carpel development	1.16E-02
124	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.16E-02
125	GO:0007015: actin filament organization	1.16E-02
126	GO:0009266: response to temperature stimulus	1.16E-02
127	GO:0009908: flower development	1.22E-02
128	GO:0006970: response to osmotic stress	1.23E-02
129	GO:0009735: response to cytokinin	1.24E-02
130	GO:0019853: L-ascorbic acid biosynthetic process	1.25E-02
131	GO:0090351: seedling development	1.25E-02
132	GO:0010030: positive regulation of seed germination	1.25E-02
133	GO:0009738: abscisic acid-activated signaling pathway	1.35E-02
134	GO:0006406: mRNA export from nucleus	1.46E-02
135	GO:0016575: histone deacetylation	1.56E-02
136	GO:0006874: cellular calcium ion homeostasis	1.56E-02
137	GO:0009695: jasmonic acid biosynthetic process	1.56E-02
138	GO:0009269: response to desiccation	1.67E-02
139	GO:0003333: amino acid transmembrane transport	1.67E-02
140	GO:0010431: seed maturation	1.67E-02
141	GO:0009651: response to salt stress	1.69E-02
142	GO:0007165: signal transduction	1.71E-02
143	GO:0019748: secondary metabolic process	1.78E-02
144	GO:0045892: negative regulation of transcription, DNA-templated	1.88E-02
145	GO:0009693: ethylene biosynthetic process	1.89E-02
146	GO:0006012: galactose metabolic process	1.89E-02
147	GO:0048443: stamen development	2.01E-02
148	GO:0045492: xylan biosynthetic process	2.01E-02
149	GO:0009561: megagametogenesis	2.01E-02
150	GO:0055085: transmembrane transport	2.03E-02
151	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.13E-02
152	GO:0006511: ubiquitin-dependent protein catabolic process	2.25E-02
153	GO:0080022: primary root development	2.25E-02
154	GO:0042391: regulation of membrane potential	2.25E-02
155	GO:0010501: RNA secondary structure unwinding	2.25E-02
156	GO:0042631: cellular response to water deprivation	2.25E-02
157	GO:0010197: polar nucleus fusion	2.37E-02
158	GO:0046323: glucose import	2.37E-02
159	GO:0009408: response to heat	2.40E-02
160	GO:0009058: biosynthetic process	2.43E-02
161	GO:0048544: recognition of pollen	2.50E-02
162	GO:0042752: regulation of circadian rhythm	2.50E-02
163	GO:0008654: phospholipid biosynthetic process	2.63E-02
164	GO:0009556: microsporogenesis	2.63E-02
165	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.76E-02
166	GO:0000302: response to reactive oxygen species	2.76E-02
167	GO:0006635: fatty acid beta-oxidation	2.76E-02
168	GO:1901657: glycosyl compound metabolic process	3.02E-02
169	GO:0019760: glucosinolate metabolic process	3.16E-02
170	GO:0010252: auxin homeostasis	3.16E-02
171	GO:0010228: vegetative to reproductive phase transition of meristem	3.33E-02
172	GO:0001666: response to hypoxia	3.58E-02
173	GO:0009911: positive regulation of flower development	3.58E-02
174	GO:0010029: regulation of seed germination	3.73E-02
175	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.73E-02
176	GO:0009617: response to bacterium	3.79E-02
177	GO:0015995: chlorophyll biosynthetic process	4.02E-02
178	GO:0048481: plant ovule development	4.33E-02
179	GO:0006952: defense response	4.66E-02
180	GO:0009631: cold acclimation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009045: xylose isomerase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0005272: sodium channel activity	0.00E+00
11	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
12	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
13	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
14	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
15	GO:0031409: pigment binding	6.11E-12
16	GO:0016168: chlorophyll binding	2.00E-09
17	GO:0004849: uridine kinase activity	1.62E-04
18	GO:0046870: cadmium ion binding	2.77E-04
19	GO:0000828: inositol hexakisphosphate kinase activity	2.77E-04
20	GO:0016274: protein-arginine N-methyltransferase activity	2.77E-04
21	GO:0070006: metalloaminopeptidase activity	2.77E-04
22	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.77E-04
23	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.77E-04
24	GO:0009679: hexose:proton symporter activity	2.77E-04
25	GO:0000829: inositol heptakisphosphate kinase activity	2.77E-04
26	GO:0010013: N-1-naphthylphthalamic acid binding	2.77E-04
27	GO:0080079: cellobiose glucosidase activity	2.77E-04
28	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.77E-04
29	GO:0005515: protein binding	5.31E-04
30	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.09E-04
31	GO:0015180: L-alanine transmembrane transporter activity	6.09E-04
32	GO:0001047: core promoter binding	6.09E-04
33	GO:0032791: lead ion binding	6.09E-04
34	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	6.09E-04
35	GO:0004609: phosphatidylserine decarboxylase activity	6.09E-04
36	GO:0003994: aconitate hydratase activity	6.09E-04
37	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	6.09E-04
38	GO:0004839: ubiquitin activating enzyme activity	6.09E-04
39	GO:0046872: metal ion binding	8.23E-04
40	GO:0017150: tRNA dihydrouridine synthase activity	9.88E-04
41	GO:0042781: 3'-tRNA processing endoribonuclease activity	9.88E-04
42	GO:0004096: catalase activity	9.88E-04
43	GO:0046592: polyamine oxidase activity	9.88E-04
44	GO:0019948: SUMO activating enzyme activity	9.88E-04
45	GO:0048027: mRNA 5'-UTR binding	1.41E-03
46	GO:0015181: arginine transmembrane transporter activity	1.41E-03
47	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.41E-03
48	GO:0004300: enoyl-CoA hydratase activity	1.41E-03
49	GO:0015189: L-lysine transmembrane transporter activity	1.41E-03
50	GO:0004707: MAP kinase activity	1.54E-03
51	GO:0005313: L-glutamate transmembrane transporter activity	1.89E-03
52	GO:0005253: anion channel activity	1.89E-03
53	GO:0042277: peptide binding	1.89E-03
54	GO:0004845: uracil phosphoribosyltransferase activity	1.89E-03
55	GO:0004737: pyruvate decarboxylase activity	1.89E-03
56	GO:0008641: small protein activating enzyme activity	2.41E-03
57	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.41E-03
58	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.41E-03
59	GO:0010294: abscisic acid glucosyltransferase activity	2.41E-03
60	GO:0015145: monosaccharide transmembrane transporter activity	2.41E-03
61	GO:0004629: phospholipase C activity	2.98E-03
62	GO:0015562: efflux transmembrane transporter activity	2.98E-03
63	GO:0019137: thioglucosidase activity	2.98E-03
64	GO:0000293: ferric-chelate reductase activity	2.98E-03
65	GO:0030976: thiamine pyrophosphate binding	2.98E-03
66	GO:0000156: phosphorelay response regulator activity	3.52E-03
67	GO:0016301: kinase activity	3.53E-03
68	GO:0070300: phosphatidic acid binding	3.58E-03
69	GO:0005261: cation channel activity	3.58E-03
70	GO:0004435: phosphatidylinositol phospholipase C activity	3.58E-03
71	GO:0009881: photoreceptor activity	4.23E-03
72	GO:0015140: malate transmembrane transporter activity	4.23E-03
73	GO:0016831: carboxy-lyase activity	4.23E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
75	GO:0004525: ribonuclease III activity	4.90E-03
76	GO:0102483: scopolin beta-glucosidase activity	5.26E-03
77	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.62E-03
78	GO:0001104: RNA polymerase II transcription cofactor activity	5.62E-03
79	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	5.62E-03
80	GO:0005267: potassium channel activity	5.62E-03
81	GO:0005351: sugar:proton symporter activity	6.20E-03
82	GO:0000989: transcription factor activity, transcription factor binding	6.37E-03
83	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.37E-03
84	GO:0008422: beta-glucosidase activity	8.08E-03
85	GO:0004177: aminopeptidase activity	8.82E-03
86	GO:0047372: acylglycerol lipase activity	8.82E-03
87	GO:0004565: beta-galactosidase activity	1.06E-02
88	GO:0005315: inorganic phosphate transmembrane transporter activity	1.06E-02
89	GO:0005262: calcium channel activity	1.06E-02
90	GO:0008131: primary amine oxidase activity	1.16E-02
91	GO:0031624: ubiquitin conjugating enzyme binding	1.16E-02
92	GO:0003712: transcription cofactor activity	1.25E-02
93	GO:0004970: ionotropic glutamate receptor activity	1.25E-02
94	GO:0005217: intracellular ligand-gated ion channel activity	1.25E-02
95	GO:0030552: cAMP binding	1.25E-02
96	GO:0030553: cGMP binding	1.25E-02
97	GO:0008270: zinc ion binding	1.35E-02
98	GO:0031625: ubiquitin protein ligase binding	1.43E-02
99	GO:0004407: histone deacetylase activity	1.46E-02
100	GO:0005216: ion channel activity	1.56E-02
101	GO:0061630: ubiquitin protein ligase activity	1.56E-02
102	GO:0008324: cation transmembrane transporter activity	1.56E-02
103	GO:0043424: protein histidine kinase binding	1.56E-02
104	GO:0003964: RNA-directed DNA polymerase activity	1.67E-02
105	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.67E-02
106	GO:0008514: organic anion transmembrane transporter activity	2.01E-02
107	GO:0030551: cyclic nucleotide binding	2.25E-02
108	GO:0005249: voltage-gated potassium channel activity	2.25E-02
109	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.37E-02
110	GO:0015144: carbohydrate transmembrane transporter activity	2.76E-02
111	GO:0015297: antiporter activity	3.04E-02
112	GO:0030247: polysaccharide binding	4.02E-02
113	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.33E-02
114	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.64E-02
115	GO:0005215: transporter activity	4.65E-02
116	GO:0008168: methyltransferase activity	4.72E-02
117	GO:0016787: hydrolase activity	4.74E-02
118	GO:0050897: cobalt ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	3.87E-10
2	GO:0009522: photosystem I	1.20E-08
3	GO:0010287: plastoglobule	2.78E-08
4	GO:0009523: photosystem II	6.42E-07
5	GO:0005777: peroxisome	1.13E-05
6	GO:0016021: integral component of membrane	6.24E-05
7	GO:0009579: thylakoid	8.18E-05
8	GO:0009534: chloroplast thylakoid	3.92E-04
9	GO:0016020: membrane	5.65E-04
10	GO:0005886: plasma membrane	1.39E-03
11	GO:0042651: thylakoid membrane	1.40E-03
12	GO:0032586: protein storage vacuole membrane	1.89E-03
13	GO:0009517: PSII associated light-harvesting complex II	1.89E-03
14	GO:0009898: cytoplasmic side of plasma membrane	1.89E-03
15	GO:0009941: chloroplast envelope	2.22E-03
16	GO:0009535: chloroplast thylakoid membrane	2.50E-03
17	GO:0070847: core mediator complex	2.98E-03
18	GO:0005851: eukaryotic translation initiation factor 2B complex	2.98E-03
19	GO:0005742: mitochondrial outer membrane translocase complex	5.62E-03
20	GO:0000326: protein storage vacuole	5.62E-03
21	GO:0000151: ubiquitin ligase complex	5.83E-03
22	GO:0031090: organelle membrane	6.37E-03
23	GO:0005680: anaphase-promoting complex	6.37E-03
24	GO:0005783: endoplasmic reticulum	6.52E-03
25	GO:0009506: plasmodesma	7.75E-03
26	GO:0031966: mitochondrial membrane	1.20E-02
27	GO:0005741: mitochondrial outer membrane	1.67E-02
28	GO:0005773: vacuole	1.86E-02
29	GO:0015629: actin cytoskeleton	1.89E-02
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.01E-02
31	GO:0005829: cytosol	2.01E-02
32	GO:0005743: mitochondrial inner membrane	2.19E-02
33	GO:0031965: nuclear membrane	2.63E-02
34	GO:0016592: mediator complex	2.89E-02
35	GO:0009705: plant-type vacuole membrane	3.18E-02
36	GO:0005622: intracellular	3.33E-02
37	GO:0005774: vacuolar membrane	4.40E-02
38	GO:0000786: nucleosome	4.95E-02