Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G33590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010203: response to very low fluence red light stimulus0.00E+00
2GO:0043171: peptide catabolic process0.00E+00
3GO:0010219: regulation of vernalization response0.00E+00
4GO:0010378: temperature compensation of the circadian clock0.00E+00
5GO:0005997: xylulose metabolic process0.00E+00
6GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
7GO:0071311: cellular response to acetate0.00E+00
8GO:0071260: cellular response to mechanical stimulus0.00E+00
9GO:0018298: protein-chromophore linkage3.90E-06
10GO:0009645: response to low light intensity stimulus3.99E-06
11GO:0010218: response to far red light5.04E-06
12GO:0007623: circadian rhythm2.32E-05
13GO:0009409: response to cold4.28E-05
14GO:0010600: regulation of auxin biosynthetic process4.90E-05
15GO:0009817: defense response to fungus, incompatible interaction7.16E-05
16GO:0000380: alternative mRNA splicing, via spliceosome7.79E-05
17GO:0009768: photosynthesis, light harvesting in photosystem I1.02E-04
18GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.56E-04
19GO:0010161: red light signaling pathway2.04E-04
20GO:0010928: regulation of auxin mediated signaling pathway2.58E-04
21GO:0035556: intracellular signal transduction2.60E-04
22GO:1902265: abscisic acid homeostasis2.70E-04
23GO:0015812: gamma-aminobutyric acid transport2.70E-04
24GO:0032958: inositol phosphate biosynthetic process2.70E-04
25GO:0006369: termination of RNA polymerase II transcription2.70E-04
26GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.70E-04
27GO:1990641: response to iron ion starvation2.70E-04
28GO:0010362: negative regulation of anion channel activity by blue light2.70E-04
29GO:0009585: red, far-red light phototransduction2.87E-04
30GO:0009638: phototropism4.56E-04
31GO:0006101: citrate metabolic process5.94E-04
32GO:0080171: lytic vacuole organization5.94E-04
33GO:0051170: nuclear import5.94E-04
34GO:0030003: cellular cation homeostasis5.94E-04
35GO:0009257: 10-formyltetrahydrofolate biosynthetic process5.94E-04
36GO:0010155: regulation of proton transport5.94E-04
37GO:0006611: protein export from nucleus5.94E-04
38GO:0048833: specification of floral organ number5.94E-04
39GO:0006816: calcium ion transport6.14E-04
40GO:0000160: phosphorelay signal transduction system7.68E-04
41GO:0009416: response to light stimulus9.47E-04
42GO:0042344: indole glucosinolate catabolic process9.62E-04
43GO:0006954: inflammatory response9.62E-04
44GO:0071230: cellular response to amino acid stimulus9.62E-04
45GO:0017006: protein-tetrapyrrole linkage9.62E-04
46GO:0000055: ribosomal large subunit export from nucleus9.62E-04
47GO:0042256: mature ribosome assembly9.62E-04
48GO:0009637: response to blue light9.69E-04
49GO:0042542: response to hydrogen peroxide1.26E-03
50GO:0010114: response to red light1.33E-03
51GO:0006874: cellular calcium ion homeostasis1.35E-03
52GO:0009113: purine nucleobase biosynthetic process1.38E-03
53GO:0015749: monosaccharide transport1.38E-03
54GO:1901332: negative regulation of lateral root development1.38E-03
55GO:0019438: aromatic compound biosynthetic process1.38E-03
56GO:0006020: inositol metabolic process1.38E-03
57GO:0010601: positive regulation of auxin biosynthetic process1.38E-03
58GO:0009584: detection of visible light1.38E-03
59GO:0008643: carbohydrate transport1.47E-03
60GO:0009644: response to high light intensity1.47E-03
61GO:0048511: rhythmic process1.48E-03
62GO:0010017: red or far-red light signaling pathway1.62E-03
63GO:0071215: cellular response to abscisic acid stimulus1.76E-03
64GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain1.84E-03
65GO:0006646: phosphatidylethanolamine biosynthetic process1.84E-03
66GO:0009687: abscisic acid metabolic process1.84E-03
67GO:0015743: malate transport1.84E-03
68GO:0048442: sepal development1.84E-03
69GO:0009765: photosynthesis, light harvesting1.84E-03
70GO:0030104: water homeostasis1.84E-03
71GO:0009737: response to abscisic acid2.02E-03
72GO:0009904: chloroplast accumulation movement2.35E-03
73GO:0016926: protein desumoylation2.35E-03
74GO:0043097: pyrimidine nucleoside salvage2.35E-03
75GO:0007029: endoplasmic reticulum organization2.35E-03
76GO:0048578: positive regulation of long-day photoperiodism, flowering2.35E-03
77GO:0048544: recognition of pollen2.60E-03
78GO:0006814: sodium ion transport2.60E-03
79GO:0031053: primary miRNA processing2.90E-03
80GO:0006206: pyrimidine nucleobase metabolic process2.90E-03
81GO:0000741: karyogamy2.90E-03
82GO:0042732: D-xylose metabolic process2.90E-03
83GO:0017148: negative regulation of translation3.49E-03
84GO:0009903: chloroplast avoidance movement3.49E-03
85GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.49E-03
86GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.49E-03
87GO:0071470: cellular response to osmotic stress3.49E-03
88GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.49E-03
89GO:0010286: heat acclimation3.83E-03
90GO:0048437: floral organ development4.12E-03
91GO:0009769: photosynthesis, light harvesting in photosystem II4.12E-03
92GO:0009396: folic acid-containing compound biosynthetic process4.12E-03
93GO:0010038: response to metal ion4.12E-03
94GO:0010044: response to aluminum ion4.12E-03
95GO:0009819: drought recovery4.77E-03
96GO:0009415: response to water4.77E-03
97GO:0010078: maintenance of root meristem identity4.77E-03
98GO:0009704: de-etiolation4.77E-03
99GO:0032508: DNA duplex unwinding4.77E-03
100GO:0006102: isocitrate metabolic process4.77E-03
101GO:0009061: anaerobic respiration4.77E-03
102GO:0048573: photoperiodism, flowering5.06E-03
103GO:0009827: plant-type cell wall modification5.47E-03
104GO:0001510: RNA methylation5.47E-03
105GO:0010099: regulation of photomorphogenesis5.47E-03
106GO:0009651: response to salt stress5.92E-03
107GO:0006811: ion transport6.19E-03
108GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay6.20E-03
109GO:0006098: pentose-phosphate shunt6.20E-03
110GO:0090333: regulation of stomatal closure6.20E-03
111GO:0046916: cellular transition metal ion homeostasis6.20E-03
112GO:0046685: response to arsenic-containing substance6.20E-03
113GO:0010228: vegetative to reproductive phase transition of meristem6.44E-03
114GO:0010043: response to zinc ion6.49E-03
115GO:0010119: regulation of stomatal movement6.49E-03
116GO:0048354: mucilage biosynthetic process involved in seed coat development6.96E-03
117GO:0008202: steroid metabolic process6.96E-03
118GO:0035999: tetrahydrofolate interconversion6.96E-03
119GO:0030042: actin filament depolymerization6.96E-03
120GO:0045087: innate immune response7.11E-03
121GO:0006468: protein phosphorylation7.70E-03
122GO:0009970: cellular response to sulfate starvation7.75E-03
123GO:0006995: cellular response to nitrogen starvation7.75E-03
124GO:0048441: petal development7.75E-03
125GO:0009641: shade avoidance7.75E-03
126GO:0055062: phosphate ion homeostasis7.75E-03
127GO:0009682: induced systemic resistance8.58E-03
128GO:0052544: defense response by callose deposition in cell wall8.58E-03
129GO:0016485: protein processing8.58E-03
130GO:0009640: photomorphogenesis9.18E-03
131GO:0016925: protein sumoylation9.44E-03
132GO:2000012: regulation of auxin polar transport1.03E-02
133GO:0009785: blue light signaling pathway1.03E-02
134GO:0006807: nitrogen compound metabolic process1.03E-02
135GO:0009718: anthocyanin-containing compound biosynthetic process1.03E-02
136GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.03E-02
137GO:0048440: carpel development1.12E-02
138GO:0007034: vacuolar transport1.12E-02
139GO:0007015: actin filament organization1.12E-02
140GO:0009266: response to temperature stimulus1.12E-02
141GO:0006970: response to osmotic stress1.17E-02
142GO:0009414: response to water deprivation1.19E-02
143GO:0019853: L-ascorbic acid biosynthetic process1.22E-02
144GO:0010030: positive regulation of seed germination1.22E-02
145GO:0009738: abscisic acid-activated signaling pathway1.27E-02
146GO:0034976: response to endoplasmic reticulum stress1.32E-02
147GO:0006857: oligopeptide transport1.33E-02
148GO:0009909: regulation of flower development1.37E-02
149GO:0006406: mRNA export from nucleus1.42E-02
150GO:0016575: histone deacetylation1.52E-02
151GO:0009695: jasmonic acid biosynthetic process1.52E-02
152GO:0044550: secondary metabolite biosynthetic process1.55E-02
153GO:0003333: amino acid transmembrane transport1.62E-02
154GO:0009269: response to desiccation1.62E-02
155GO:0015979: photosynthesis1.65E-02
156GO:0019748: secondary metabolic process1.73E-02
157GO:0045892: negative regulation of transcription, DNA-templated1.79E-02
158GO:0009693: ethylene biosynthetic process1.84E-02
159GO:0006012: galactose metabolic process1.84E-02
160GO:0048443: stamen development1.95E-02
161GO:0019722: calcium-mediated signaling1.95E-02
162GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.07E-02
163GO:0070417: cellular response to cold2.07E-02
164GO:0080022: primary root development2.19E-02
165GO:0034220: ion transmembrane transport2.19E-02
166GO:0010501: RNA secondary structure unwinding2.19E-02
167GO:0000413: protein peptidyl-prolyl isomerization2.19E-02
168GO:0042391: regulation of membrane potential2.19E-02
169GO:0010051: xylem and phloem pattern formation2.19E-02
170GO:0042631: cellular response to water deprivation2.19E-02
171GO:0006520: cellular amino acid metabolic process2.31E-02
172GO:0071472: cellular response to salt stress2.31E-02
173GO:0010197: polar nucleus fusion2.31E-02
174GO:0046323: glucose import2.31E-02
175GO:0042752: regulation of circadian rhythm2.43E-02
176GO:0009646: response to absence of light2.43E-02
177GO:0005975: carbohydrate metabolic process2.52E-02
178GO:0008654: phospholipid biosynthetic process2.55E-02
179GO:0009556: microsporogenesis2.55E-02
180GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.68E-02
181GO:0006635: fatty acid beta-oxidation2.68E-02
182GO:0009630: gravitropism2.81E-02
183GO:1901657: glycosyl compound metabolic process2.94E-02
184GO:0019760: glucosinolate metabolic process3.07E-02
185GO:0001666: response to hypoxia3.48E-02
186GO:0009911: positive regulation of flower development3.48E-02
187GO:0010029: regulation of seed germination3.63E-02
188GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.63E-02
189GO:0009617: response to bacterium3.65E-02
190GO:0015995: chlorophyll biosynthetic process3.91E-02
191GO:0006950: response to stress3.91E-02
192GO:0055114: oxidation-reduction process4.02E-02
193GO:0009735: response to cytokinin4.16E-02
194GO:0007165: signal transduction4.26E-02
195GO:0009834: plant-type secondary cell wall biogenesis4.51E-02
196GO:0009631: cold acclimation4.66E-02
RankGO TermAdjusted P value
1GO:0009045: xylose isomerase activity0.00E+00
2GO:0080082: esculin beta-glucosidase activity0.00E+00
3GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
4GO:0015276: ligand-gated ion channel activity0.00E+00
5GO:0004567: beta-mannosidase activity0.00E+00
6GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
7GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
8GO:0047668: amygdalin beta-glucosidase activity0.00E+00
9GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
10GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
11GO:0005272: sodium channel activity0.00E+00
12GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
13GO:0010349: L-galactose dehydrogenase activity0.00E+00
14GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
15GO:0005253: anion channel activity4.90E-05
16GO:0031409: pigment binding7.44E-05
17GO:0016301: kinase activity2.62E-04
18GO:0070006: metalloaminopeptidase activity2.70E-04
19GO:0008066: glutamate receptor activity2.70E-04
20GO:0000828: inositol hexakisphosphate kinase activity2.70E-04
21GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.70E-04
22GO:0030275: LRR domain binding2.70E-04
23GO:0031516: far-red light photoreceptor activity2.70E-04
24GO:0033857: diphosphoinositol-pentakisphosphate kinase activity2.70E-04
25GO:0009679: hexose:proton symporter activity2.70E-04
26GO:0035671: enone reductase activity2.70E-04
27GO:0000829: inositol heptakisphosphate kinase activity2.70E-04
28GO:0010013: N-1-naphthylphthalamic acid binding2.70E-04
29GO:0080079: cellobiose glucosidase activity2.70E-04
30GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.70E-04
31GO:0004856: xylulokinase activity2.70E-04
32GO:0046870: cadmium ion binding2.70E-04
33GO:0016168: chlorophyll binding5.53E-04
34GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.94E-04
35GO:0004329: formate-tetrahydrofolate ligase activity5.94E-04
36GO:0015180: L-alanine transmembrane transporter activity5.94E-04
37GO:0004352: glutamate dehydrogenase (NAD+) activity5.94E-04
38GO:0004353: glutamate dehydrogenase [NAD(P)+] activity5.94E-04
39GO:0032791: lead ion binding5.94E-04
40GO:0009883: red or far-red light photoreceptor activity5.94E-04
41GO:0004609: phosphatidylserine decarboxylase activity5.94E-04
42GO:0003994: aconitate hydratase activity5.94E-04
43GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity5.94E-04
44GO:0004477: methenyltetrahydrofolate cyclohydrolase activity5.94E-04
45GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity5.94E-04
46GO:0004839: ubiquitin activating enzyme activity5.94E-04
47GO:0005515: protein binding7.83E-04
48GO:0000155: phosphorelay sensor kinase activity7.96E-04
49GO:0005262: calcium channel activity7.96E-04
50GO:0050897: cobalt ion binding8.65E-04
51GO:0004175: endopeptidase activity8.95E-04
52GO:0017150: tRNA dihydrouridine synthase activity9.62E-04
53GO:0008020: G-protein coupled photoreceptor activity9.62E-04
54GO:0004096: catalase activity9.62E-04
55GO:0019948: SUMO activating enzyme activity9.62E-04
56GO:0004970: ionotropic glutamate receptor activity9.99E-04
57GO:0005217: intracellular ligand-gated ion channel activity9.99E-04
58GO:0048027: mRNA 5'-UTR binding1.38E-03
59GO:0015181: arginine transmembrane transporter activity1.38E-03
60GO:0009882: blue light photoreceptor activity1.38E-03
61GO:0043023: ribosomal large subunit binding1.38E-03
62GO:0004165: dodecenoyl-CoA delta-isomerase activity1.38E-03
63GO:0004300: enoyl-CoA hydratase activity1.38E-03
64GO:0015189: L-lysine transmembrane transporter activity1.38E-03
65GO:0005313: L-glutamate transmembrane transporter activity1.84E-03
66GO:0042277: peptide binding1.84E-03
67GO:0004737: pyruvate decarboxylase activity1.84E-03
68GO:0008641: small protein activating enzyme activity2.35E-03
69GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.35E-03
70GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.35E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor2.35E-03
72GO:0016929: SUMO-specific protease activity2.35E-03
73GO:0010294: abscisic acid glucosyltransferase activity2.35E-03
74GO:0015145: monosaccharide transmembrane transporter activity2.35E-03
75GO:0004672: protein kinase activity2.63E-03
76GO:0004629: phospholipase C activity2.90E-03
77GO:0019137: thioglucosidase activity2.90E-03
78GO:0015562: efflux transmembrane transporter activity2.90E-03
79GO:0000293: ferric-chelate reductase activity2.90E-03
80GO:0005247: voltage-gated chloride channel activity2.90E-03
81GO:0030976: thiamine pyrophosphate binding2.90E-03
82GO:0000156: phosphorelay response regulator activity3.39E-03
83GO:0004849: uridine kinase activity3.49E-03
84GO:0070300: phosphatidic acid binding3.49E-03
85GO:0004435: phosphatidylinositol phospholipase C activity3.49E-03
86GO:0005261: cation channel activity3.49E-03
87GO:0015140: malate transmembrane transporter activity4.12E-03
88GO:0016831: carboxy-lyase activity4.12E-03
89GO:0004525: ribonuclease III activity4.77E-03
90GO:0004033: aldo-keto reductase (NADP) activity4.77E-03
91GO:0102483: scopolin beta-glucosidase activity5.06E-03
92GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity5.47E-03
93GO:0001104: RNA polymerase II transcription cofactor activity5.47E-03
94GO:0005267: potassium channel activity5.47E-03
95GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.47E-03
96GO:0015297: antiporter activity5.73E-03
97GO:0004674: protein serine/threonine kinase activity5.80E-03
98GO:0005351: sugar:proton symporter activity5.90E-03
99GO:0004693: cyclin-dependent protein serine/threonine kinase activity6.19E-03
100GO:0000989: transcription factor activity, transcription factor binding6.20E-03
101GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.20E-03
102GO:0004673: protein histidine kinase activity7.75E-03
103GO:0008171: O-methyltransferase activity7.75E-03
104GO:0008422: beta-glucosidase activity7.77E-03
105GO:0042802: identical protein binding8.25E-03
106GO:0004177: aminopeptidase activity8.58E-03
107GO:0004565: beta-galactosidase activity1.03E-02
108GO:0005315: inorganic phosphate transmembrane transporter activity1.03E-02
109GO:0031624: ubiquitin conjugating enzyme binding1.12E-02
110GO:0008270: zinc ion binding1.19E-02
111GO:0030552: cAMP binding1.22E-02
112GO:0030553: cGMP binding1.22E-02
113GO:0004407: histone deacetylase activity1.42E-02
114GO:0005215: transporter activity1.47E-02
115GO:0008324: cation transmembrane transporter activity1.52E-02
116GO:0043424: protein histidine kinase binding1.52E-02
117GO:0005216: ion channel activity1.52E-02
118GO:0004707: MAP kinase activity1.62E-02
119GO:0019706: protein-cysteine S-palmitoyltransferase activity1.62E-02
120GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.93E-02
121GO:0008514: organic anion transmembrane transporter activity1.95E-02
122GO:0003756: protein disulfide isomerase activity1.95E-02
123GO:0046872: metal ion binding2.03E-02
124GO:0030551: cyclic nucleotide binding2.19E-02
125GO:0005249: voltage-gated potassium channel activity2.19E-02
126GO:0005507: copper ion binding2.27E-02
127GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.28E-02
128GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.31E-02
129GO:0010181: FMN binding2.43E-02
130GO:0003729: mRNA binding2.44E-02
131GO:0015144: carbohydrate transmembrane transporter activity2.66E-02
132GO:0005524: ATP binding3.55E-02
133GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.88E-02
134GO:0030247: polysaccharide binding3.91E-02
135GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.06E-02
136GO:0015238: drug transmembrane transporter activity4.36E-02
137GO:0003697: single-stranded DNA binding4.97E-02
RankGO TermAdjusted P value
1GO:0005777: peroxisome9.70E-06
2GO:0005886: plasma membrane2.16E-05
3GO:0030076: light-harvesting complex6.27E-05
4GO:0016021: integral component of membrane1.48E-04
5GO:0009522: photosystem I2.64E-04
6GO:0016607: nuclear speck3.96E-04
7GO:0016020: membrane4.62E-04
8GO:0010287: plastoglobule6.54E-04
9GO:0005829: cytosol1.44E-03
10GO:0032586: protein storage vacuole membrane1.84E-03
11GO:0009517: PSII associated light-harvesting complex II1.84E-03
12GO:0010445: nuclear dicing body1.84E-03
13GO:0009898: cytoplasmic side of plasma membrane1.84E-03
14GO:0009523: photosystem II2.79E-03
15GO:0070847: core mediator complex2.90E-03
16GO:0005851: eukaryotic translation initiation factor 2B complex2.90E-03
17GO:0034707: chloride channel complex2.90E-03
18GO:0000815: ESCRT III complex3.49E-03
19GO:0009986: cell surface4.12E-03
20GO:0000326: protein storage vacuole5.47E-03
21GO:0000307: cyclin-dependent protein kinase holoenzyme complex5.47E-03
22GO:0009705: plant-type vacuole membrane6.08E-03
23GO:0031090: organelle membrane6.20E-03
24GO:0016604: nuclear body6.96E-03
25GO:0031966: mitochondrial membrane1.15E-02
26GO:0005773: vacuole1.71E-02
27GO:0009579: thylakoid1.75E-02
28GO:0015629: actin cytoskeleton1.84E-02
29GO:0031965: nuclear membrane2.55E-02
30GO:0016592: mediator complex2.81E-02
31GO:0005622: intracellular3.15E-02
32GO:0005774: vacuolar membrane4.10E-02
33GO:0000151: ubiquitin ligase complex4.21E-02
34GO:0048046: apoplast4.47E-02
35GO:0000786: nucleosome4.82E-02
Gene type



Gene DE type