co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	1.98E-06
4	GO:0010207: photosystem II assembly	1.53E-05
5	GO:0035304: regulation of protein dephosphorylation	4.12E-05
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.12E-05
7	GO:0030007: cellular potassium ion homeostasis	1.53E-04
8	GO:0016120: carotene biosynthetic process	1.98E-04
9	GO:0042549: photosystem II stabilization	2.47E-04
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.47E-04
11	GO:0009228: thiamine biosynthetic process	2.47E-04
12	GO:0010019: chloroplast-nucleus signaling pathway	2.97E-04
13	GO:0009231: riboflavin biosynthetic process	4.04E-04
14	GO:0009657: plastid organization	4.60E-04
15	GO:0034765: regulation of ion transmembrane transport	5.18E-04
16	GO:0009051: pentose-phosphate shunt, oxidative branch	5.18E-04
17	GO:0010205: photoinhibition	5.76E-04
18	GO:0045036: protein targeting to chloroplast	6.38E-04
19	GO:0019684: photosynthesis, light reaction	7.00E-04
20	GO:0043085: positive regulation of catalytic activity	7.00E-04
21	GO:0010030: positive regulation of seed germination	9.64E-04
22	GO:0016114: terpenoid biosynthetic process	1.25E-03
23	GO:0051260: protein homooligomerization	1.25E-03
24	GO:0016117: carotenoid biosynthetic process	1.56E-03
25	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.56E-03
26	GO:0000413: protein peptidyl-prolyl isomerization	1.65E-03
27	GO:0042631: cellular response to water deprivation	1.65E-03
28	GO:0016032: viral process	2.08E-03
29	GO:0071805: potassium ion transmembrane transport	2.36E-03
30	GO:0010029: regulation of seed germination	2.65E-03
31	GO:0006468: protein phosphorylation	2.67E-03
32	GO:0010119: regulation of stomatal movement	3.36E-03
33	GO:0010114: response to red light	4.25E-03
34	GO:0009585: red, far-red light phototransduction	5.21E-03
35	GO:0006417: regulation of translation	5.59E-03
36	GO:0009624: response to nematode	6.64E-03
37	GO:0006396: RNA processing	6.78E-03
38	GO:0045490: pectin catabolic process	9.73E-03
39	GO:0007166: cell surface receptor signaling pathway	1.07E-02
40	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.58E-02
41	GO:0015979: photosynthesis	1.69E-02
42	GO:0032259: methylation	1.97E-02
43	GO:0016042: lipid catabolic process	1.99E-02
44	GO:0006397: mRNA processing	2.09E-02
45	GO:0016567: protein ubiquitination	2.20E-02
46	GO:0009873: ethylene-activated signaling pathway	2.44E-02
47	GO:0035556: intracellular signal transduction	3.18E-02
48	GO:0006457: protein folding	3.68E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0015269: calcium-activated potassium channel activity	0.00E+00
4	GO:0046906: tetrapyrrole binding	1.57E-05
5	GO:0010242: oxygen evolving activity	1.57E-05
6	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.12E-05
7	GO:0017057: 6-phosphogluconolactonase activity	1.11E-04
8	GO:0015271: outward rectifier potassium channel activity	2.47E-04
9	GO:0043621: protein self-association	2.50E-04
10	GO:0019899: enzyme binding	3.49E-04
11	GO:0005267: potassium channel activity	4.60E-04
12	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.66E-04
13	GO:0008266: poly(U) RNA binding	8.97E-04
14	GO:0005216: ion channel activity	1.18E-03
15	GO:0043424: protein histidine kinase binding	1.18E-03
16	GO:0030570: pectate lyase activity	1.40E-03
17	GO:0003727: single-stranded RNA binding	1.48E-03
18	GO:0019901: protein kinase binding	1.90E-03
19	GO:0016791: phosphatase activity	2.26E-03
20	GO:0016168: chlorophyll binding	2.65E-03
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.72E-03
22	GO:0003779: actin binding	6.51E-03
23	GO:0016829: lyase activity	8.21E-03
24	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.26E-03
25	GO:0003743: translation initiation factor activity	1.09E-02
26	GO:0016788: hydrolase activity, acting on ester bonds	1.34E-02
27	GO:0004497: monooxygenase activity	1.54E-02
28	GO:0016787: hydrolase activity	1.54E-02
29	GO:0052689: carboxylic ester hydrolase activity	1.65E-02
30	GO:0009055: electron carrier activity	2.14E-02
31	GO:0004674: protein serine/threonine kinase activity	3.56E-02
32	GO:0005507: copper ion binding	3.94E-02
33	GO:0019825: oxygen binding	3.94E-02
34	GO:0005509: calcium ion binding	4.77E-02
35	GO:0005506: iron ion binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	1.80E-06
2	GO:0031977: thylakoid lumen	4.89E-06
3	GO:0009543: chloroplast thylakoid lumen	2.43E-05
4	GO:0009507: chloroplast	3.66E-05
5	GO:0009579: thylakoid	4.08E-05
6	GO:0009535: chloroplast thylakoid membrane	4.51E-05
7	GO:0031969: chloroplast membrane	1.08E-04
8	GO:0009533: chloroplast stromal thylakoid	3.49E-04
9	GO:0030095: chloroplast photosystem II	8.97E-04
10	GO:0009654: photosystem II oxygen evolving complex	1.18E-03
11	GO:0009522: photosystem I	1.82E-03
12	GO:0019898: extrinsic component of membrane	1.90E-03
13	GO:0009570: chloroplast stroma	2.08E-03
14	GO:0010287: plastoglobule	7.48E-03
15	GO:0005623: cell	7.91E-03
16	GO:0005774: vacuolar membrane	2.50E-02
17	GO:0016021: integral component of membrane	2.78E-02
18	GO:0009941: chloroplast envelope	3.39E-02
19	GO:0005622: intracellular	4.61E-02