co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009773: photosynthetic electron transport in photosystem I	1.57E-08
2	GO:0016120: carotene biosynthetic process	1.24E-05
3	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	8.96E-05
4	GO:0071277: cellular response to calcium ion	8.96E-05
5	GO:0051180: vitamin transport	8.96E-05
6	GO:0030974: thiamine pyrophosphate transport	8.96E-05
7	GO:0033481: galacturonate biosynthetic process	8.96E-05
8	GO:0010205: photoinhibition	9.17E-05
9	GO:0015893: drug transport	2.12E-04
10	GO:0043255: regulation of carbohydrate biosynthetic process	2.12E-04
11	GO:0010115: regulation of abscisic acid biosynthetic process	2.12E-04
12	GO:0001736: establishment of planar polarity	2.12E-04
13	GO:0010167: response to nitrate	2.22E-04
14	GO:0006636: unsaturated fatty acid biosynthetic process	2.49E-04
15	GO:0006857: oligopeptide transport	3.05E-04
16	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.11E-04
17	GO:0016998: cell wall macromolecule catabolic process	3.38E-04
18	GO:0015714: phosphoenolpyruvate transport	3.54E-04
19	GO:0006518: peptide metabolic process	3.54E-04
20	GO:0080170: hydrogen peroxide transmembrane transport	5.10E-04
21	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.10E-04
22	GO:0071484: cellular response to light intensity	5.10E-04
23	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.76E-04
24	GO:0045727: positive regulation of translation	6.78E-04
25	GO:0015713: phosphoglycerate transport	6.78E-04
26	GO:0030308: negative regulation of cell growth	8.59E-04
27	GO:0010236: plastoquinone biosynthetic process	8.59E-04
28	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.05E-03
29	GO:0009913: epidermal cell differentiation	1.05E-03
30	GO:0010337: regulation of salicylic acid metabolic process	1.05E-03
31	GO:0006561: proline biosynthetic process	1.05E-03
32	GO:0010405: arabinogalactan protein metabolic process	1.05E-03
33	GO:0010189: vitamin E biosynthetic process	1.25E-03
34	GO:0009395: phospholipid catabolic process	1.46E-03
35	GO:0009772: photosynthetic electron transport in photosystem II	1.46E-03
36	GO:0050829: defense response to Gram-negative bacterium	1.46E-03
37	GO:1900057: positive regulation of leaf senescence	1.46E-03
38	GO:0010444: guard mother cell differentiation	1.46E-03
39	GO:0006810: transport	1.60E-03
40	GO:0008610: lipid biosynthetic process	1.69E-03
41	GO:0042255: ribosome assembly	1.69E-03
42	GO:0046620: regulation of organ growth	1.69E-03
43	GO:0030091: protein repair	1.69E-03
44	GO:0009704: de-etiolation	1.69E-03
45	GO:0055075: potassium ion homeostasis	1.69E-03
46	GO:0016559: peroxisome fission	1.69E-03
47	GO:0032544: plastid translation	1.93E-03
48	GO:0009926: auxin polar transport	2.00E-03
49	GO:0010206: photosystem II repair	2.18E-03
50	GO:0090333: regulation of stomatal closure	2.18E-03
51	GO:0015979: photosynthesis	2.33E-03
52	GO:0006032: chitin catabolic process	2.70E-03
53	GO:0009688: abscisic acid biosynthetic process	2.70E-03
54	GO:0048829: root cap development	2.70E-03
55	GO:0000038: very long-chain fatty acid metabolic process	2.98E-03
56	GO:0009750: response to fructose	2.98E-03
57	GO:0018119: peptidyl-cysteine S-nitrosylation	2.98E-03
58	GO:0048765: root hair cell differentiation	2.98E-03
59	GO:0015706: nitrate transport	3.26E-03
60	GO:0009718: anthocyanin-containing compound biosynthetic process	3.56E-03
61	GO:0009725: response to hormone	3.56E-03
62	GO:0010020: chloroplast fission	3.86E-03
63	GO:0010207: photosystem II assembly	3.86E-03
64	GO:0009742: brassinosteroid mediated signaling pathway	4.02E-03
65	GO:0009225: nucleotide-sugar metabolic process	4.18E-03
66	GO:0009825: multidimensional cell growth	4.18E-03
67	GO:0071732: cellular response to nitric oxide	4.18E-03
68	GO:0010030: positive regulation of seed germination	4.18E-03
69	GO:0010053: root epidermal cell differentiation	4.18E-03
70	GO:0010025: wax biosynthetic process	4.50E-03
71	GO:0006833: water transport	4.50E-03
72	GO:0006487: protein N-linked glycosylation	4.83E-03
73	GO:0007017: microtubule-based process	5.17E-03
74	GO:0009269: response to desiccation	5.52E-03
75	GO:0031408: oxylipin biosynthetic process	5.52E-03
76	GO:0003333: amino acid transmembrane transport	5.52E-03
77	GO:0006633: fatty acid biosynthetic process	5.94E-03
78	GO:0009735: response to cytokinin	5.95E-03
79	GO:0071369: cellular response to ethylene stimulus	6.23E-03
80	GO:0007623: circadian rhythm	6.52E-03
81	GO:0042127: regulation of cell proliferation	6.61E-03
82	GO:0009306: protein secretion	6.61E-03
83	GO:0009651: response to salt stress	6.81E-03
84	GO:0016117: carotenoid biosynthetic process	6.99E-03
85	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.99E-03
86	GO:0042631: cellular response to water deprivation	7.37E-03
87	GO:0042335: cuticle development	7.37E-03
88	GO:0034220: ion transmembrane transport	7.37E-03
89	GO:0009958: positive gravitropism	7.77E-03
90	GO:0010182: sugar mediated signaling pathway	7.77E-03
91	GO:0009741: response to brassinosteroid	7.77E-03
92	GO:0045893: positive regulation of transcription, DNA-templated	7.94E-03
93	GO:0015986: ATP synthesis coupled proton transport	8.17E-03
94	GO:0002229: defense response to oomycetes	8.99E-03
95	GO:0032502: developmental process	9.42E-03
96	GO:0071281: cellular response to iron ion	9.85E-03
97	GO:0016126: sterol biosynthetic process	1.17E-02
98	GO:0010027: thylakoid membrane organization	1.17E-02
99	GO:0080167: response to karrikin	1.25E-02
100	GO:0042128: nitrate assimilation	1.26E-02
101	GO:0015995: chlorophyll biosynthetic process	1.31E-02
102	GO:0010411: xyloglucan metabolic process	1.31E-02
103	GO:0048573: photoperiodism, flowering	1.31E-02
104	GO:0030244: cellulose biosynthetic process	1.41E-02
105	GO:0018298: protein-chromophore linkage	1.41E-02
106	GO:0010311: lateral root formation	1.46E-02
107	GO:0009414: response to water deprivation	1.58E-02
108	GO:0006865: amino acid transport	1.61E-02
109	GO:0006869: lipid transport	1.65E-02
110	GO:0009637: response to blue light	1.66E-02
111	GO:0016042: lipid catabolic process	1.80E-02
112	GO:0006839: mitochondrial transport	1.82E-02
113	GO:0009408: response to heat	1.86E-02
114	GO:0009733: response to auxin	1.89E-02
115	GO:0009744: response to sucrose	1.99E-02
116	GO:0042546: cell wall biogenesis	2.05E-02
117	GO:0009644: response to high light intensity	2.10E-02
118	GO:0009409: response to cold	2.39E-02
119	GO:0009809: lignin biosynthetic process	2.46E-02
120	GO:0006364: rRNA processing	2.46E-02
121	GO:0009734: auxin-activated signaling pathway	2.62E-02
122	GO:0048316: seed development	2.84E-02
123	GO:0009624: response to nematode	3.16E-02
124	GO:0009416: response to light stimulus	3.29E-02
125	GO:0051726: regulation of cell cycle	3.30E-02
126	GO:0055085: transmembrane transport	4.17E-02
127	GO:0009737: response to abscisic acid	4.19E-02
128	GO:0040008: regulation of growth	4.51E-02
129	GO:0010150: leaf senescence	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:1990534: thermospermine oxidase activity	0.00E+00
7	GO:0090422: thiamine pyrophosphate transporter activity	8.96E-05
8	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	8.96E-05
9	GO:0045485: omega-6 fatty acid desaturase activity	8.96E-05
10	GO:0019210: kinase inhibitor activity	8.96E-05
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	8.96E-05
12	GO:0015293: symporter activity	2.18E-04
13	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	5.10E-04
14	GO:0010328: auxin influx transmembrane transporter activity	6.78E-04
15	GO:0052793: pectin acetylesterase activity	6.78E-04
16	GO:0004506: squalene monooxygenase activity	6.78E-04
17	GO:0050378: UDP-glucuronate 4-epimerase activity	6.78E-04
18	GO:0015120: phosphoglycerate transmembrane transporter activity	6.78E-04
19	GO:0010011: auxin binding	6.78E-04
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.78E-04
21	GO:0005215: transporter activity	9.80E-04
22	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.05E-03
23	GO:0035673: oligopeptide transmembrane transporter activity	1.05E-03
24	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.25E-03
25	GO:0016788: hydrolase activity, acting on ester bonds	1.54E-03
26	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.93E-03
27	GO:0052689: carboxylic ester hydrolase activity	2.24E-03
28	GO:0015112: nitrate transmembrane transporter activity	2.43E-03
29	GO:0004568: chitinase activity	2.70E-03
30	GO:0003690: double-stranded DNA binding	2.77E-03
31	GO:0015198: oligopeptide transporter activity	3.26E-03
32	GO:0004565: beta-galactosidase activity	3.56E-03
33	GO:0004022: alcohol dehydrogenase (NAD) activity	3.56E-03
34	GO:0008266: poly(U) RNA binding	3.86E-03
35	GO:0008131: primary amine oxidase activity	3.86E-03
36	GO:0008146: sulfotransferase activity	4.18E-03
37	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.50E-03
38	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.50E-03
39	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.50E-03
40	GO:0019843: rRNA binding	4.73E-03
41	GO:0005528: FK506 binding	4.83E-03
42	GO:0004176: ATP-dependent peptidase activity	5.52E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	6.23E-03
44	GO:0003727: single-stranded RNA binding	6.61E-03
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.77E-03
46	GO:0050662: coenzyme binding	8.17E-03
47	GO:0042802: identical protein binding	8.29E-03
48	GO:0004872: receptor activity	8.58E-03
49	GO:0048038: quinone binding	8.99E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.99E-03
51	GO:0005200: structural constituent of cytoskeleton	1.07E-02
52	GO:0015250: water channel activity	1.17E-02
53	GO:0016168: chlorophyll binding	1.21E-02
54	GO:0008375: acetylglucosaminyltransferase activity	1.26E-02
55	GO:0030247: polysaccharide binding	1.31E-02
56	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.31E-02
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.36E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.41E-02
59	GO:0004222: metalloendopeptidase activity	1.51E-02
60	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.51E-02
61	GO:0003993: acid phosphatase activity	1.72E-02
62	GO:0003924: GTPase activity	1.86E-02
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.22E-02
64	GO:0016491: oxidoreductase activity	2.31E-02
65	GO:0004672: protein kinase activity	2.65E-02
66	GO:0015171: amino acid transmembrane transporter activity	2.65E-02
67	GO:0031625: ubiquitin protein ligase binding	2.65E-02
68	GO:0045735: nutrient reservoir activity	2.77E-02
69	GO:0016746: transferase activity, transferring acyl groups	3.23E-02
70	GO:0016758: transferase activity, transferring hexosyl groups	3.64E-02
71	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.78E-02
72	GO:0004674: protein serine/threonine kinase activity	4.05E-02
73	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.33E-02
74	GO:0030246: carbohydrate binding	4.42E-02
75	GO:0015297: antiporter activity	4.51E-02
76	GO:0008017: microtubule binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	3.16E-09
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.45E-07
3	GO:0016021: integral component of membrane	3.43E-06
4	GO:0009534: chloroplast thylakoid	4.25E-06
5	GO:0009507: chloroplast	4.41E-06
6	GO:0009579: thylakoid	4.44E-05
7	GO:0048046: apoplast	1.51E-04
8	GO:0030095: chloroplast photosystem II	1.97E-04
9	GO:0015630: microtubule cytoskeleton	5.10E-04
10	GO:0009543: chloroplast thylakoid lumen	5.88E-04
11	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.05E-03
12	GO:0009986: cell surface	1.46E-03
13	GO:0031969: chloroplast membrane	1.97E-03
14	GO:0008180: COP9 signalosome	2.18E-03
15	GO:0009706: chloroplast inner membrane	3.79E-03
16	GO:0010287: plastoglobule	4.49E-03
17	GO:0009654: photosystem II oxygen evolving complex	5.17E-03
18	GO:0042651: thylakoid membrane	5.17E-03
19	GO:0009523: photosystem II	8.58E-03
20	GO:0019898: extrinsic component of membrane	8.58E-03
21	GO:0046658: anchored component of plasma membrane	8.64E-03
22	GO:0032580: Golgi cisterna membrane	1.03E-02
23	GO:0010319: stromule	1.07E-02
24	GO:0009941: chloroplast envelope	1.22E-02
25	GO:0005886: plasma membrane	1.32E-02
26	GO:0009707: chloroplast outer membrane	1.41E-02
27	GO:0019005: SCF ubiquitin ligase complex	1.41E-02
28	GO:0005768: endosome	1.43E-02
29	GO:0031977: thylakoid lumen	1.88E-02
30	GO:0005794: Golgi apparatus	1.94E-02
31	GO:0009536: plastid	2.11E-02
32	GO:0000502: proteasome complex	2.46E-02
33	GO:0005887: integral component of plasma membrane	2.52E-02
34	GO:0016020: membrane	4.05E-02