co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009946: proximal/distal axis specification	0.00E+00
2	GO:0045740: positive regulation of DNA replication	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0080094: response to trehalose-6-phosphate	0.00E+00
5	GO:0009715: chalcone biosynthetic process	0.00E+00
6	GO:0042026: protein refolding	2.12E-05
7	GO:0006458: 'de novo' protein folding	2.12E-05
8	GO:0008610: lipid biosynthetic process	3.81E-05
9	GO:0000066: mitochondrial ornithine transport	7.75E-05
10	GO:0019510: S-adenosylhomocysteine catabolic process	7.75E-05
11	GO:0006169: adenosine salvage	7.75E-05
12	GO:0010424: DNA methylation on cytosine within a CG sequence	1.85E-04
13	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.85E-04
14	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.85E-04
15	GO:0015712: hexose phosphate transport	1.85E-04
16	GO:0009629: response to gravity	1.85E-04
17	GO:0033353: S-adenosylmethionine cycle	1.85E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.25E-04
19	GO:0061077: chaperone-mediated protein folding	2.78E-04
20	GO:0007005: mitochondrion organization	3.05E-04
21	GO:0010338: leaf formation	3.11E-04
22	GO:0035436: triose phosphate transmembrane transport	3.11E-04
23	GO:0006696: ergosterol biosynthetic process	3.11E-04
24	GO:0045489: pectin biosynthetic process	4.57E-04
25	GO:0009694: jasmonic acid metabolic process	5.98E-04
26	GO:0009765: photosynthesis, light harvesting	5.98E-04
27	GO:0045088: regulation of innate immune response	5.98E-04
28	GO:0015713: phosphoglycerate transport	5.98E-04
29	GO:0006546: glycine catabolic process	5.98E-04
30	GO:0044209: AMP salvage	7.57E-04
31	GO:0070814: hydrogen sulfide biosynthetic process	9.24E-04
32	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	9.24E-04
33	GO:0018298: protein-chromophore linkage	1.03E-03
34	GO:0009094: L-phenylalanine biosynthetic process	1.10E-03
35	GO:0017148: negative regulation of translation	1.10E-03
36	GO:0010218: response to far red light	1.13E-03
37	GO:0046686: response to cadmium ion	1.26E-03
38	GO:0007050: cell cycle arrest	1.29E-03
39	GO:0000082: G1/S transition of mitotic cell cycle	1.29E-03
40	GO:0031540: regulation of anthocyanin biosynthetic process	1.48E-03
41	GO:0034968: histone lysine methylation	1.48E-03
42	GO:0007155: cell adhesion	1.48E-03
43	GO:0010114: response to red light	1.65E-03
44	GO:0022900: electron transport chain	1.69E-03
45	GO:0048193: Golgi vesicle transport	1.69E-03
46	GO:0048589: developmental growth	1.91E-03
47	GO:0008356: asymmetric cell division	2.14E-03
48	GO:0006349: regulation of gene expression by genetic imprinting	2.14E-03
49	GO:0010192: mucilage biosynthetic process	2.37E-03
50	GO:0051555: flavonol biosynthetic process	2.37E-03
51	GO:0009970: cellular response to sulfate starvation	2.37E-03
52	GO:0000103: sulfate assimilation	2.37E-03
53	GO:0010216: maintenance of DNA methylation	2.61E-03
54	GO:0000272: polysaccharide catabolic process	2.61E-03
55	GO:0010102: lateral root morphogenesis	3.12E-03
56	GO:0019253: reductive pentose-phosphate cycle	3.38E-03
57	GO:0080188: RNA-directed DNA methylation	3.66E-03
58	GO:0009833: plant-type primary cell wall biogenesis	3.94E-03
59	GO:0007010: cytoskeleton organization	4.23E-03
60	GO:0009944: polarity specification of adaxial/abaxial axis	4.23E-03
61	GO:0009695: jasmonic acid biosynthetic process	4.52E-03
62	GO:0009768: photosynthesis, light harvesting in photosystem I	4.52E-03
63	GO:0031408: oxylipin biosynthetic process	4.82E-03
64	GO:0006730: one-carbon metabolic process	5.13E-03
65	GO:0009416: response to light stimulus	5.19E-03
66	GO:0040007: growth	5.45E-03
67	GO:0009294: DNA mediated transformation	5.45E-03
68	GO:0016117: carotenoid biosynthetic process	6.10E-03
69	GO:0000271: polysaccharide biosynthetic process	6.44E-03
70	GO:0071554: cell wall organization or biogenesis	7.85E-03
71	GO:0010583: response to cyclopentenone	8.22E-03
72	GO:0016032: viral process	8.22E-03
73	GO:0009615: response to virus	1.02E-02
74	GO:0080167: response to karrikin	1.03E-02
75	GO:0015979: photosynthesis	1.18E-02
76	GO:0016311: dephosphorylation	1.18E-02
77	GO:0030244: cellulose biosynthetic process	1.22E-02
78	GO:0071555: cell wall organization	1.27E-02
79	GO:0048767: root hair elongation	1.27E-02
80	GO:0009813: flavonoid biosynthetic process	1.27E-02
81	GO:0010311: lateral root formation	1.27E-02
82	GO:0009832: plant-type cell wall biogenesis	1.27E-02
83	GO:0009407: toxin catabolic process	1.31E-02
84	GO:0009910: negative regulation of flower development	1.36E-02
85	GO:0048527: lateral root development	1.36E-02
86	GO:0009637: response to blue light	1.45E-02
87	GO:0009867: jasmonic acid mediated signaling pathway	1.45E-02
88	GO:0016051: carbohydrate biosynthetic process	1.45E-02
89	GO:0006839: mitochondrial transport	1.59E-02
90	GO:0009753: response to jasmonic acid	1.64E-02
91	GO:0008152: metabolic process	1.68E-02
92	GO:0009926: auxin polar transport	1.73E-02
93	GO:0009744: response to sucrose	1.73E-02
94	GO:0051707: response to other organism	1.73E-02
95	GO:0009636: response to toxic substance	1.88E-02
96	GO:0009965: leaf morphogenesis	1.88E-02
97	GO:0010224: response to UV-B	2.19E-02
98	GO:0006096: glycolytic process	2.41E-02
99	GO:0043086: negative regulation of catalytic activity	2.41E-02
100	GO:0048367: shoot system development	2.47E-02
101	GO:0016569: covalent chromatin modification	2.64E-02
102	GO:0009611: response to wounding	2.77E-02
103	GO:0009790: embryo development	3.61E-02
104	GO:0045490: pectin catabolic process	4.06E-02
105	GO:0009739: response to gibberellin	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
6	GO:0008962: phosphatidylglycerophosphatase activity	0.00E+00
7	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
8	GO:0004013: adenosylhomocysteinase activity	7.75E-05
9	GO:0051996: squalene synthase activity	7.75E-05
10	GO:0010313: phytochrome binding	7.75E-05
11	GO:0004001: adenosine kinase activity	7.75E-05
12	GO:0044183: protein binding involved in protein folding	1.04E-04
13	GO:0004618: phosphoglycerate kinase activity	1.85E-04
14	GO:0004047: aminomethyltransferase activity	1.85E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	1.85E-04
16	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	1.85E-04
17	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.85E-04
18	GO:0071917: triose-phosphate transmembrane transporter activity	3.11E-04
19	GO:0003913: DNA photolyase activity	3.11E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	3.11E-04
21	GO:0004781: sulfate adenylyltransferase (ATP) activity	3.11E-04
22	GO:0016757: transferase activity, transferring glycosyl groups	3.39E-04
23	GO:0048027: mRNA 5'-UTR binding	4.49E-04
24	GO:0015120: phosphoglycerate transmembrane transporter activity	5.98E-04
25	GO:0047769: arogenate dehydratase activity	5.98E-04
26	GO:0004664: prephenate dehydratase activity	5.98E-04
27	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	5.98E-04
28	GO:0008374: O-acyltransferase activity	7.57E-04
29	GO:0016597: amino acid binding	7.57E-04
30	GO:0080030: methyl indole-3-acetate esterase activity	9.24E-04
31	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	9.24E-04
32	GO:0102229: amylopectin maltohydrolase activity	9.24E-04
33	GO:0016161: beta-amylase activity	1.10E-03
34	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.10E-03
35	GO:0009881: photoreceptor activity	1.29E-03
36	GO:0043295: glutathione binding	1.29E-03
37	GO:0051082: unfolded protein binding	3.12E-03
38	GO:0004565: beta-galactosidase activity	3.12E-03
39	GO:0016758: transferase activity, transferring hexosyl groups	3.80E-03
40	GO:0031409: pigment binding	3.94E-03
41	GO:0016829: lyase activity	4.22E-03
42	GO:0004672: protein kinase activity	4.95E-03
43	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.13E-03
44	GO:0016760: cellulose synthase (UDP-forming) activity	5.45E-03
45	GO:0030570: pectate lyase activity	5.45E-03
46	GO:0008194: UDP-glycosyltransferase activity	6.00E-03
47	GO:0018024: histone-lysine N-methyltransferase activity	6.10E-03
48	GO:0016740: transferase activity	6.68E-03
49	GO:0005355: glucose transmembrane transporter activity	7.13E-03
50	GO:0005507: copper ion binding	8.13E-03
51	GO:0004518: nuclease activity	8.22E-03
52	GO:0016759: cellulose synthase activity	8.97E-03
53	GO:0008483: transaminase activity	9.36E-03
54	GO:0005200: structural constituent of cytoskeleton	9.36E-03
55	GO:0016413: O-acetyltransferase activity	9.75E-03
56	GO:0016168: chlorophyll binding	1.06E-02
57	GO:0050897: cobalt ion binding	1.36E-02
58	GO:0003746: translation elongation factor activity	1.45E-02
59	GO:0003993: acid phosphatase activity	1.49E-02
60	GO:0004364: glutathione transferase activity	1.68E-02
61	GO:0005524: ATP binding	1.68E-02
62	GO:0051537: 2 iron, 2 sulfur cluster binding	1.83E-02
63	GO:0051287: NAD binding	1.98E-02
64	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.47E-02
65	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.58E-02
66	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.58E-02
67	GO:0004650: polygalacturonase activity	2.58E-02
68	GO:0004674: protein serine/threonine kinase activity	3.04E-02
69	GO:0004252: serine-type endopeptidase activity	3.48E-02
70	GO:0046910: pectinesterase inhibitor activity	3.86E-02
71	GO:0015297: antiporter activity	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.81E-06
2	GO:0009507: chloroplast	1.60E-04
3	GO:0009941: chloroplast envelope	1.75E-04
4	GO:0005853: eukaryotic translation elongation factor 1 complex	3.11E-04
5	GO:0000793: condensed chromosome	9.24E-04
6	GO:0009579: thylakoid	1.24E-03
7	GO:0005794: Golgi apparatus	1.65E-03
8	GO:0009539: photosystem II reaction center	1.69E-03
9	GO:0009535: chloroplast thylakoid membrane	2.37E-03
10	GO:0030076: light-harvesting complex	3.66E-03
11	GO:0010287: plastoglobule	3.70E-03
12	GO:0009654: photosystem II oxygen evolving complex	4.52E-03
13	GO:0022626: cytosolic ribosome	4.91E-03
14	GO:0048046: apoplast	5.54E-03
15	GO:0009522: photosystem I	7.13E-03
16	GO:0009523: photosystem II	7.49E-03
17	GO:0005694: chromosome	8.22E-03
18	GO:0031225: anchored component of membrane	9.13E-03
19	GO:0010319: stromule	9.36E-03
20	GO:0005576: extracellular region	9.97E-03
21	GO:0031969: chloroplast membrane	1.03E-02
22	GO:0005886: plasma membrane	1.14E-02
23	GO:0005856: cytoskeleton	1.88E-02
24	GO:0009506: plasmodesma	1.88E-02
25	GO:0005730: nucleolus	2.47E-02
26	GO:0005747: mitochondrial respiratory chain complex I	2.47E-02
27	GO:0005654: nucleoplasm	3.17E-02
28	GO:0009534: chloroplast thylakoid	3.27E-02
29	GO:0005773: vacuole	3.39E-02
30	GO:0005759: mitochondrial matrix	3.80E-02
31	GO:0009705: plant-type vacuole membrane	4.06E-02
32	GO:0005802: trans-Golgi network	4.33E-02
33	GO:0016021: integral component of membrane	4.49E-02
34	GO:0005768: endosome	4.91E-02
35	GO:0046658: anchored component of plasma membrane	4.95E-02