co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0009768: photosynthesis, light harvesting in photosystem I	4.12E-20
5	GO:0018298: protein-chromophore linkage	1.97E-14
6	GO:0015979: photosynthesis	1.18E-13
7	GO:0009645: response to low light intensity stimulus	3.47E-09
8	GO:0010218: response to far red light	8.66E-09
9	GO:0010114: response to red light	3.13E-08
10	GO:0009409: response to cold	6.07E-08
11	GO:0009637: response to blue light	5.72E-07
12	GO:0009769: photosynthesis, light harvesting in photosystem II	7.11E-07
13	GO:0009644: response to high light intensity	1.40E-06
14	GO:0007623: circadian rhythm	2.38E-05
15	GO:0010196: nonphotochemical quenching	7.02E-05
16	GO:0009416: response to light stimulus	1.16E-04
17	GO:0015812: gamma-aminobutyric acid transport	1.35E-04
18	GO:0032958: inositol phosphate biosynthetic process	1.35E-04
19	GO:0010119: regulation of stomatal movement	2.48E-04
20	GO:0051170: nuclear import	3.11E-04
21	GO:0042542: response to hydrogen peroxide	3.73E-04
22	GO:1902448: positive regulation of shade avoidance	5.13E-04
23	GO:0006598: polyamine catabolic process	5.13E-04
24	GO:0048511: rhythmic process	5.84E-04
25	GO:0010017: red or far-red light signaling pathway	6.38E-04
26	GO:0080167: response to karrikin	7.07E-04
27	GO:0044211: CTP salvage	7.34E-04
28	GO:0031936: negative regulation of chromatin silencing	7.34E-04
29	GO:0050482: arachidonic acid secretion	7.34E-04
30	GO:0006020: inositol metabolic process	7.34E-04
31	GO:0009765: photosynthesis, light harvesting	9.73E-04
32	GO:2000306: positive regulation of photomorphogenesis	9.73E-04
33	GO:0010600: regulation of auxin biosynthetic process	9.73E-04
34	GO:0044206: UMP salvage	9.73E-04
35	GO:0030104: water homeostasis	9.73E-04
36	GO:0006351: transcription, DNA-templated	1.22E-03
37	GO:0000380: alternative mRNA splicing, via spliceosome	1.23E-03
38	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.23E-03
39	GO:0043097: pyrimidine nucleoside salvage	1.23E-03
40	GO:0006355: regulation of transcription, DNA-templated	1.29E-03
41	GO:1901657: glycosyl compound metabolic process	1.30E-03
42	GO:0045962: positive regulation of development, heterochronic	1.51E-03
43	GO:0006206: pyrimidine nucleobase metabolic process	1.51E-03
44	GO:0009635: response to herbicide	1.51E-03
45	GO:0010029: regulation of seed germination	1.74E-03
46	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.81E-03
47	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.81E-03
48	GO:0015995: chlorophyll biosynthetic process	1.93E-03
49	GO:0006950: response to stress	1.93E-03
50	GO:1900056: negative regulation of leaf senescence	2.12E-03
51	GO:0080111: DNA demethylation	2.12E-03
52	GO:0010038: response to metal ion	2.12E-03
53	GO:0010161: red light signaling pathway	2.12E-03
54	GO:0000160: phosphorelay signal transduction system	2.24E-03
55	GO:0006644: phospholipid metabolic process	2.46E-03
56	GO:0010928: regulation of auxin mediated signaling pathway	2.46E-03
57	GO:0009704: de-etiolation	2.46E-03
58	GO:0032508: DNA duplex unwinding	2.46E-03
59	GO:0009735: response to cytokinin	2.63E-03
60	GO:0010099: regulation of photomorphogenesis	2.81E-03
61	GO:0009827: plant-type cell wall modification	2.81E-03
62	GO:0090333: regulation of stomatal closure	3.17E-03
63	GO:0009640: photomorphogenesis	3.47E-03
64	GO:0030042: actin filament depolymerization	3.55E-03
65	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.55E-03
66	GO:0010380: regulation of chlorophyll biosynthetic process	3.55E-03
67	GO:0008643: carbohydrate transport	3.75E-03
68	GO:0010162: seed dormancy process	3.95E-03
69	GO:0009970: cellular response to sulfate starvation	3.95E-03
70	GO:0006995: cellular response to nitrogen starvation	3.95E-03
71	GO:0009641: shade avoidance	3.95E-03
72	GO:0006949: syncytium formation	3.95E-03
73	GO:0018119: peptidyl-cysteine S-nitrosylation	4.36E-03
74	GO:0009585: red, far-red light phototransduction	4.66E-03
75	GO:0009718: anthocyanin-containing compound biosynthetic process	5.22E-03
76	GO:0009767: photosynthetic electron transport chain	5.22E-03
77	GO:0010207: photosystem II assembly	5.68E-03
78	GO:0007015: actin filament organization	5.68E-03
79	GO:0009266: response to temperature stimulus	5.68E-03
80	GO:0019853: L-ascorbic acid biosynthetic process	6.14E-03
81	GO:0090351: seedling development	6.14E-03
82	GO:0006406: mRNA export from nucleus	7.11E-03
83	GO:0061077: chaperone-mediated protein folding	8.14E-03
84	GO:0009269: response to desiccation	8.14E-03
85	GO:0003333: amino acid transmembrane transport	8.14E-03
86	GO:0009737: response to abscisic acid	8.32E-03
87	GO:0009414: response to water deprivation	8.49E-03
88	GO:0071215: cellular response to abscisic acid stimulus	9.21E-03
89	GO:0006012: galactose metabolic process	9.21E-03
90	GO:0045492: xylan biosynthetic process	9.77E-03
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.03E-02
92	GO:0010501: RNA secondary structure unwinding	1.09E-02
93	GO:0009908: flower development	1.20E-02
94	GO:0010228: vegetative to reproductive phase transition of meristem	1.20E-02
95	GO:0006814: sodium ion transport	1.21E-02
96	GO:0042752: regulation of circadian rhythm	1.21E-02
97	GO:0009739: response to gibberellin	1.28E-02
98	GO:0009738: abscisic acid-activated signaling pathway	1.31E-02
99	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.34E-02
100	GO:0000302: response to reactive oxygen species	1.34E-02
101	GO:0009828: plant-type cell wall loosening	1.53E-02
102	GO:0045893: positive regulation of transcription, DNA-templated	1.63E-02
103	GO:0005975: carbohydrate metabolic process	1.65E-02
104	GO:0016579: protein deubiquitination	1.66E-02
105	GO:0009826: unidimensional cell growth	1.71E-02
106	GO:0046686: response to cadmium ion	1.72E-02
107	GO:0016126: sterol biosynthetic process	1.73E-02
108	GO:0009658: chloroplast organization	1.78E-02
109	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.80E-02
110	GO:0009651: response to salt stress	1.82E-02
111	GO:0055085: transmembrane transport	1.85E-02
112	GO:0006970: response to osmotic stress	1.92E-02
113	GO:0006888: ER to Golgi vesicle-mediated transport	1.95E-02
114	GO:0048573: photoperiodism, flowering	1.95E-02
115	GO:0055114: oxidation-reduction process	2.04E-02
116	GO:0009817: defense response to fungus, incompatible interaction	2.09E-02
117	GO:0048481: plant ovule development	2.09E-02
118	GO:0009910: negative regulation of flower development	2.32E-02
119	GO:0009631: cold acclimation	2.32E-02
120	GO:0010043: response to zinc ion	2.32E-02
121	GO:0045087: innate immune response	2.48E-02
122	GO:0045892: negative regulation of transcription, DNA-templated	2.68E-02
123	GO:0006839: mitochondrial transport	2.72E-02
124	GO:0051707: response to other organism	2.97E-02
125	GO:0032259: methylation	3.12E-02
126	GO:0009965: leaf morphogenesis	3.23E-02
127	GO:0042538: hyperosmotic salinity response	3.49E-02
128	GO:0006812: cation transport	3.49E-02
129	GO:0009664: plant-type cell wall organization	3.49E-02
130	GO:0009909: regulation of flower development	3.95E-02
131	GO:0043086: negative regulation of catalytic activity	4.13E-02
132	GO:0009624: response to nematode	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0031409: pigment binding	3.08E-18
10	GO:0016168: chlorophyll binding	6.85E-15
11	GO:0005515: protein binding	8.00E-05
12	GO:0000829: inositol heptakisphosphate kinase activity	1.35E-04
13	GO:0080079: cellobiose glucosidase activity	1.35E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	1.35E-04
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.35E-04
16	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.35E-04
17	GO:0004565: beta-galactosidase activity	3.08E-04
18	GO:0016630: protochlorophyllide reductase activity	3.11E-04
19	GO:0015180: L-alanine transmembrane transporter activity	3.11E-04
20	GO:0004096: catalase activity	5.13E-04
21	GO:0046592: polyamine oxidase activity	5.13E-04
22	GO:0016787: hydrolase activity	6.88E-04
23	GO:0015189: L-lysine transmembrane transporter activity	7.34E-04
24	GO:0015181: arginine transmembrane transporter activity	7.34E-04
25	GO:0005313: L-glutamate transmembrane transporter activity	9.73E-04
26	GO:0004506: squalene monooxygenase activity	9.73E-04
27	GO:0005253: anion channel activity	9.73E-04
28	GO:0004845: uracil phosphoribosyltransferase activity	9.73E-04
29	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.23E-03
30	GO:0004623: phospholipase A2 activity	1.23E-03
31	GO:0000156: phosphorelay response regulator activity	1.30E-03
32	GO:0015562: efflux transmembrane transporter activity	1.51E-03
33	GO:0005247: voltage-gated chloride channel activity	1.51E-03
34	GO:0004849: uridine kinase activity	1.81E-03
35	GO:0102483: scopolin beta-glucosidase activity	1.93E-03
36	GO:0004033: aldo-keto reductase (NADP) activity	2.46E-03
37	GO:0004564: beta-fructofuranosidase activity	2.46E-03
38	GO:0008422: beta-glucosidase activity	2.94E-03
39	GO:0046872: metal ion binding	3.12E-03
40	GO:0000989: transcription factor activity, transcription factor binding	3.17E-03
41	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.17E-03
42	GO:0004575: sucrose alpha-glucosidase activity	3.55E-03
43	GO:0047372: acylglycerol lipase activity	4.36E-03
44	GO:0004022: alcohol dehydrogenase (NAD) activity	5.22E-03
45	GO:0005315: inorganic phosphate transmembrane transporter activity	5.22E-03
46	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.28E-03
47	GO:0008131: primary amine oxidase activity	5.68E-03
48	GO:0003712: transcription cofactor activity	6.14E-03
49	GO:0008324: cation transmembrane transporter activity	7.62E-03
50	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.14E-03
51	GO:0004707: MAP kinase activity	8.14E-03
52	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.14E-03
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.51E-03
54	GO:0003677: DNA binding	8.80E-03
55	GO:0008514: organic anion transmembrane transporter activity	9.77E-03
56	GO:0015297: antiporter activity	1.09E-02
57	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.34E-02
58	GO:0008168: methyltransferase activity	1.71E-02
59	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.94E-02
60	GO:0004497: monooxygenase activity	2.21E-02
61	GO:0050897: cobalt ion binding	2.32E-02
62	GO:0003697: single-stranded DNA binding	2.48E-02
63	GO:0003993: acid phosphatase activity	2.56E-02
64	GO:0042393: histone binding	2.72E-02
65	GO:0008270: zinc ion binding	2.76E-02
66	GO:0005509: calcium ion binding	2.99E-02
67	GO:0043621: protein self-association	3.14E-02
68	GO:0005198: structural molecule activity	3.23E-02
69	GO:0015293: symporter activity	3.23E-02
70	GO:0003690: double-stranded DNA binding	3.76E-02
71	GO:0015171: amino acid transmembrane transporter activity	3.95E-02
72	GO:0022857: transmembrane transporter activity	4.52E-02
73	GO:0016874: ligase activity	4.52E-02
74	GO:0003779: actin binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	2.50E-18
3	GO:0030076: light-harvesting complex	8.59E-14
4	GO:0009579: thylakoid	1.04E-13
5	GO:0009534: chloroplast thylakoid	1.11E-13
6	GO:0010287: plastoglobule	2.57E-13
7	GO:0009535: chloroplast thylakoid membrane	4.12E-12
8	GO:0009941: chloroplast envelope	8.62E-10
9	GO:0009523: photosystem II	4.13E-08
10	GO:0009517: PSII associated light-harvesting complex II	1.51E-05
11	GO:0016020: membrane	2.00E-05
12	GO:0042651: thylakoid membrane	2.26E-05
13	GO:0009538: photosystem I reaction center	9.09E-05
14	GO:0009507: chloroplast	1.29E-04
15	GO:0016021: integral component of membrane	1.69E-04
16	GO:0030127: COPII vesicle coat	1.51E-03
17	GO:0034707: chloride channel complex	1.51E-03
18	GO:0009533: chloroplast stromal thylakoid	2.12E-03
19	GO:0010494: cytoplasmic stress granule	3.17E-03
20	GO:0005777: peroxisome	3.72E-03
21	GO:0031966: mitochondrial membrane	4.34E-03
22	GO:0030095: chloroplast photosystem II	5.68E-03
23	GO:0009654: photosystem II oxygen evolving complex	7.62E-03
24	GO:0005618: cell wall	8.15E-03
25	GO:0009543: chloroplast thylakoid lumen	8.29E-03
26	GO:0031410: cytoplasmic vesicle	8.67E-03
27	GO:0015629: actin cytoskeleton	9.21E-03
28	GO:0009505: plant-type cell wall	1.24E-02
29	GO:0019898: extrinsic component of membrane	1.27E-02
30	GO:0000932: P-body	1.73E-02
31	GO:0009707: chloroplast outer membrane	2.09E-02
32	GO:0048046: apoplast	2.09E-02
33	GO:0031977: thylakoid lumen	2.80E-02
34	GO:0005622: intracellular	2.81E-02
35	GO:0016607: nuclear speck	4.23E-02