Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043201: response to leucine0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0080053: response to phenylalanine0.00E+00
4GO:0002376: immune system process0.00E+00
5GO:0010421: hydrogen peroxide-mediated programmed cell death0.00E+00
6GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
7GO:0006983: ER overload response0.00E+00
8GO:0080052: response to histidine0.00E+00
9GO:0006793: phosphorus metabolic process0.00E+00
10GO:0051238: sequestering of metal ion0.00E+00
11GO:0046865: terpenoid transport0.00E+00
12GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
13GO:0072722: response to amitrole0.00E+00
14GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
15GO:0010055: atrichoblast differentiation0.00E+00
16GO:0071456: cellular response to hypoxia4.08E-10
17GO:0010200: response to chitin2.10E-08
18GO:0042742: defense response to bacterium1.67E-06
19GO:0010150: leaf senescence1.87E-06
20GO:0043066: negative regulation of apoptotic process8.68E-06
21GO:0010204: defense response signaling pathway, resistance gene-independent2.94E-05
22GO:0009617: response to bacterium3.36E-05
23GO:0006536: glutamate metabolic process1.13E-04
24GO:0006952: defense response1.46E-04
25GO:0002237: response to molecule of bacterial origin1.55E-04
26GO:0006468: protein phosphorylation2.45E-04
27GO:0002238: response to molecule of fungal origin2.48E-04
28GO:0009817: defense response to fungus, incompatible interaction2.58E-04
29GO:0008219: cell death2.58E-04
30GO:0006874: cellular calcium ion homeostasis2.84E-04
31GO:0009407: toxin catabolic process3.04E-04
32GO:1900057: positive regulation of leaf senescence4.30E-04
33GO:0060627: regulation of vesicle-mediated transport4.43E-04
34GO:0015760: glucose-6-phosphate transport4.43E-04
35GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.43E-04
36GO:0032491: detection of molecule of fungal origin4.43E-04
37GO:0032107: regulation of response to nutrient levels4.43E-04
38GO:1903648: positive regulation of chlorophyll catabolic process4.43E-04
39GO:0030091: protein repair5.37E-04
40GO:0051707: response to other organism5.68E-04
41GO:0010120: camalexin biosynthetic process6.55E-04
42GO:0055114: oxidation-reduction process6.86E-04
43GO:0010112: regulation of systemic acquired resistance7.84E-04
44GO:0048569: post-embryonic animal organ development9.56E-04
45GO:0090057: root radial pattern formation9.56E-04
46GO:0051457: maintenance of protein location in nucleus9.56E-04
47GO:0009866: induced systemic resistance, ethylene mediated signaling pathway9.56E-04
48GO:0002240: response to molecule of oomycetes origin9.56E-04
49GO:0042939: tripeptide transport9.56E-04
50GO:0044419: interspecies interaction between organisms9.56E-04
51GO:1902000: homogentisate catabolic process9.56E-04
52GO:0015712: hexose phosphate transport9.56E-04
53GO:0080026: response to indolebutyric acid9.56E-04
54GO:0051592: response to calcium ion9.56E-04
55GO:0009805: coumarin biosynthetic process9.56E-04
56GO:0006032: chitin catabolic process1.07E-03
57GO:0009751: response to salicylic acid1.27E-03
58GO:0009615: response to virus1.28E-03
59GO:0009620: response to fungus1.33E-03
60GO:0012501: programmed cell death1.41E-03
61GO:0009627: systemic acquired resistance1.47E-03
62GO:0009072: aromatic amino acid family metabolic process1.56E-03
63GO:0015714: phosphoenolpyruvate transport1.56E-03
64GO:0080168: abscisic acid transport1.56E-03
65GO:0071367: cellular response to brassinosteroid stimulus1.56E-03
66GO:0034051: negative regulation of plant-type hypersensitive response1.56E-03
67GO:1900140: regulation of seedling development1.56E-03
68GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.56E-03
69GO:0035436: triose phosphate transmembrane transport1.56E-03
70GO:0051176: positive regulation of sulfur metabolic process1.56E-03
71GO:0010351: lithium ion transport1.56E-03
72GO:0010476: gibberellin mediated signaling pathway1.56E-03
73GO:0010325: raffinose family oligosaccharide biosynthetic process1.56E-03
74GO:0010272: response to silver ion1.56E-03
75GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.56E-03
76GO:0015692: lead ion transport1.56E-03
77GO:0070588: calcium ion transmembrane transport2.03E-03
78GO:0010104: regulation of ethylene-activated signaling pathway2.25E-03
79GO:0010731: protein glutathionylation2.25E-03
80GO:0080024: indolebutyric acid metabolic process2.25E-03
81GO:0006882: cellular zinc ion homeostasis2.25E-03
82GO:0046836: glycolipid transport2.25E-03
83GO:0048194: Golgi vesicle budding2.25E-03
84GO:0070301: cellular response to hydrogen peroxide2.25E-03
85GO:1901002: positive regulation of response to salt stress3.03E-03
86GO:0015713: phosphoglycerate transport3.03E-03
87GO:0080142: regulation of salicylic acid biosynthetic process3.03E-03
88GO:0042938: dipeptide transport3.03E-03
89GO:0010109: regulation of photosynthesis3.03E-03
90GO:0060548: negative regulation of cell death3.03E-03
91GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.03E-03
92GO:0016998: cell wall macromolecule catabolic process3.05E-03
93GO:0042542: response to hydrogen peroxide3.20E-03
94GO:0016226: iron-sulfur cluster assembly3.34E-03
95GO:0010225: response to UV-C3.88E-03
96GO:0000304: response to singlet oxygen3.88E-03
97GO:0009697: salicylic acid biosynthetic process3.88E-03
98GO:0034052: positive regulation of plant-type hypersensitive response3.88E-03
99GO:0097428: protein maturation by iron-sulfur cluster transfer3.88E-03
100GO:0045487: gibberellin catabolic process3.88E-03
101GO:0009636: response to toxic substance3.91E-03
102GO:0007166: cell surface receptor signaling pathway4.33E-03
103GO:0032259: methylation4.49E-03
104GO:0006812: cation transport4.50E-03
105GO:0009737: response to abscisic acid4.60E-03
106GO:0060918: auxin transport4.80E-03
107GO:0009117: nucleotide metabolic process4.80E-03
108GO:0009643: photosynthetic acclimation4.80E-03
109GO:0050665: hydrogen peroxide biosynthetic process4.80E-03
110GO:0006561: proline biosynthetic process4.80E-03
111GO:0015691: cadmium ion transport4.80E-03
112GO:0010256: endomembrane system organization4.80E-03
113GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.79E-03
114GO:0009749: response to glucose5.79E-03
115GO:0098655: cation transmembrane transport5.79E-03
116GO:0009854: oxidative photosynthetic carbon pathway5.79E-03
117GO:0048444: floral organ morphogenesis5.79E-03
118GO:0010555: response to mannitol5.79E-03
119GO:2000067: regulation of root morphogenesis5.79E-03
120GO:0000302: response to reactive oxygen species6.19E-03
121GO:0002229: defense response to oomycetes6.19E-03
122GO:0010193: response to ozone6.19E-03
123GO:0043090: amino acid import6.85E-03
124GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway6.85E-03
125GO:1900056: negative regulation of leaf senescence6.85E-03
126GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.85E-03
127GO:0030026: cellular manganese ion homeostasis6.85E-03
128GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.85E-03
129GO:0050829: defense response to Gram-negative bacterium6.85E-03
130GO:0009395: phospholipid catabolic process6.85E-03
131GO:0009819: drought recovery7.97E-03
132GO:0043068: positive regulation of programmed cell death7.97E-03
133GO:0019375: galactolipid biosynthetic process7.97E-03
134GO:2000070: regulation of response to water deprivation7.97E-03
135GO:0051607: defense response to virus8.48E-03
136GO:0022900: electron transport chain9.15E-03
137GO:0006075: (1->3)-beta-D-glucan biosynthetic process9.15E-03
138GO:0001558: regulation of cell growth9.15E-03
139GO:0007186: G-protein coupled receptor signaling pathway9.15E-03
140GO:0030968: endoplasmic reticulum unfolded protein response9.15E-03
141GO:0043562: cellular response to nitrogen levels9.15E-03
142GO:0009699: phenylpropanoid biosynthetic process9.15E-03
143GO:0009816: defense response to bacterium, incompatible interaction9.51E-03
144GO:0009607: response to biotic stimulus9.51E-03
145GO:0080167: response to karrikin9.53E-03
146GO:0009821: alkaloid biosynthetic process1.04E-02
147GO:0051865: protein autoubiquitination1.04E-02
148GO:0009056: catabolic process1.04E-02
149GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.17E-02
150GO:0071577: zinc II ion transmembrane transport1.17E-02
151GO:0055062: phosphate ion homeostasis1.30E-02
152GO:0010162: seed dormancy process1.30E-02
153GO:0007064: mitotic sister chromatid cohesion1.30E-02
154GO:0009870: defense response signaling pathway, resistance gene-dependent1.30E-02
155GO:0006995: cellular response to nitrogen starvation1.30E-02
156GO:0009688: abscisic acid biosynthetic process1.30E-02
157GO:0043069: negative regulation of programmed cell death1.30E-02
158GO:0048527: lateral root development1.36E-02
159GO:0009089: lysine biosynthetic process via diaminopimelate1.45E-02
160GO:0009682: induced systemic resistance1.45E-02
161GO:0006879: cellular iron ion homeostasis1.45E-02
162GO:0000272: polysaccharide catabolic process1.45E-02
163GO:0009750: response to fructose1.45E-02
164GO:0048229: gametophyte development1.45E-02
165GO:0000038: very long-chain fatty acid metabolic process1.45E-02
166GO:0006790: sulfur compound metabolic process1.59E-02
167GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.59E-02
168GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.74E-02
169GO:0055046: microgametogenesis1.74E-02
170GO:0009718: anthocyanin-containing compound biosynthetic process1.74E-02
171GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.79E-02
172GO:0009753: response to jasmonic acid1.91E-02
173GO:0009744: response to sucrose1.93E-02
174GO:0042343: indole glucosinolate metabolic process2.06E-02
175GO:0046854: phosphatidylinositol phosphorylation2.06E-02
176GO:0010053: root epidermal cell differentiation2.06E-02
177GO:0006855: drug transmembrane transport2.25E-02
178GO:0031347: regulation of defense response2.34E-02
179GO:2000377: regulation of reactive oxygen species metabolic process2.40E-02
180GO:0005992: trehalose biosynthetic process2.40E-02
181GO:0042538: hyperosmotic salinity response2.43E-02
182GO:0051302: regulation of cell division2.57E-02
183GO:0007165: signal transduction2.70E-02
184GO:0010224: response to UV-B2.70E-02
185GO:0098542: defense response to other organism2.75E-02
186GO:0009814: defense response, incompatible interaction2.93E-02
187GO:0019748: secondary metabolic process2.93E-02
188GO:0071215: cellular response to abscisic acid stimulus3.12E-02
189GO:0009686: gibberellin biosynthetic process3.12E-02
190GO:0071369: cellular response to ethylene stimulus3.12E-02
191GO:0006012: galactose metabolic process3.12E-02
192GO:0006351: transcription, DNA-templated3.15E-02
193GO:0009723: response to ethylene3.24E-02
194GO:0009626: plant-type hypersensitive response3.28E-02
195GO:0010584: pollen exine formation3.31E-02
196GO:0006817: phosphate ion transport3.31E-02
197GO:0010091: trichome branching3.31E-02
198GO:0009561: megagametogenesis3.31E-02
199GO:0009624: response to nematode3.71E-02
200GO:0042391: regulation of membrane potential3.71E-02
201GO:0008360: regulation of cell shape3.91E-02
202GO:0009958: positive gravitropism3.91E-02
203GO:0006885: regulation of pH3.91E-02
204GO:0006814: sodium ion transport4.12E-02
205GO:0006623: protein targeting to vacuole4.33E-02
206GO:0006979: response to oxidative stress4.36E-02
207GO:0009058: biosynthetic process4.87E-02
208GO:0009845: seed germination5.00E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0008843: endochitinase activity0.00E+00
4GO:0035885: exochitinase activity0.00E+00
5GO:0016034: maleylacetoacetate isomerase activity0.00E+00
6GO:0004351: glutamate decarboxylase activity6.46E-05
7GO:0004364: glutathione transferase activity6.78E-05
8GO:0005516: calmodulin binding7.23E-05
9GO:0016301: kinase activity3.07E-04
10GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.33E-04
11GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity4.43E-04
12GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity4.43E-04
13GO:0010285: L,L-diaminopimelate aminotransferase activity4.43E-04
14GO:0015152: glucose-6-phosphate transmembrane transporter activity9.56E-04
15GO:0042937: tripeptide transporter activity9.56E-04
16GO:0004385: guanylate kinase activity9.56E-04
17GO:0036455: iron-sulfur transferase activity9.56E-04
18GO:0010331: gibberellin binding9.56E-04
19GO:0045543: gibberellin 2-beta-dioxygenase activity9.56E-04
20GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.56E-03
21GO:0000975: regulatory region DNA binding1.56E-03
22GO:0031683: G-protein beta/gamma-subunit complex binding1.56E-03
23GO:0071917: triose-phosphate transmembrane transporter activity1.56E-03
24GO:0001664: G-protein coupled receptor binding1.56E-03
25GO:0005388: calcium-transporting ATPase activity1.61E-03
26GO:0043565: sequence-specific DNA binding1.63E-03
27GO:0008061: chitin binding2.03E-03
28GO:0004970: ionotropic glutamate receptor activity2.03E-03
29GO:0005217: intracellular ligand-gated ion channel activity2.03E-03
30GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.25E-03
31GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.25E-03
32GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.25E-03
33GO:0017089: glycolipid transporter activity2.25E-03
34GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.25E-03
35GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.43E-03
36GO:0010279: indole-3-acetic acid amido synthetase activity3.03E-03
37GO:0009916: alternative oxidase activity3.03E-03
38GO:0008891: glycolate oxidase activity3.03E-03
39GO:0015120: phosphoglycerate transmembrane transporter activity3.03E-03
40GO:0015368: calcium:cation antiporter activity3.03E-03
41GO:0042936: dipeptide transporter activity3.03E-03
42GO:0051861: glycolipid binding3.03E-03
43GO:0015369: calcium:proton antiporter activity3.03E-03
44GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.17E-03
45GO:0004674: protein serine/threonine kinase activity3.36E-03
46GO:0008198: ferrous iron binding3.88E-03
47GO:0031386: protein tag3.88E-03
48GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.88E-03
49GO:0045431: flavonol synthase activity3.88E-03
50GO:0004499: N,N-dimethylaniline monooxygenase activity3.97E-03
51GO:0004866: endopeptidase inhibitor activity4.80E-03
52GO:0030976: thiamine pyrophosphate binding4.80E-03
53GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.79E-03
54GO:0004012: phospholipid-translocating ATPase activity5.79E-03
55GO:0003978: UDP-glucose 4-epimerase activity5.79E-03
56GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.79E-03
57GO:0051920: peroxiredoxin activity5.79E-03
58GO:0008168: methyltransferase activity6.49E-03
59GO:0102425: myricetin 3-O-glucosyltransferase activity6.85E-03
60GO:0102360: daphnetin 3-O-glucosyltransferase activity6.85E-03
61GO:0008121: ubiquinol-cytochrome-c reductase activity6.85E-03
62GO:0004143: diacylglycerol kinase activity6.85E-03
63GO:0004601: peroxidase activity6.87E-03
64GO:0047893: flavonol 3-O-glucosyltransferase activity7.97E-03
65GO:0004033: aldo-keto reductase (NADP) activity7.97E-03
66GO:0015491: cation:cation antiporter activity7.97E-03
67GO:0004714: transmembrane receptor protein tyrosine kinase activity7.97E-03
68GO:0016209: antioxidant activity7.97E-03
69GO:0008483: transaminase activity7.99E-03
70GO:0050660: flavin adenine dinucleotide binding8.58E-03
71GO:0051213: dioxygenase activity8.99E-03
72GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.15E-03
73GO:0003843: 1,3-beta-D-glucan synthase activity9.15E-03
74GO:0004630: phospholipase D activity9.15E-03
75GO:0046872: metal ion binding9.55E-03
76GO:0005524: ATP binding9.81E-03
77GO:0061630: ubiquitin protein ligase activity1.03E-02
78GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.12E-02
79GO:0016844: strictosidine synthase activity1.17E-02
80GO:0030170: pyridoxal phosphate binding1.18E-02
81GO:0004672: protein kinase activity1.30E-02
82GO:0004713: protein tyrosine kinase activity1.30E-02
83GO:0004568: chitinase activity1.30E-02
84GO:0008171: O-methyltransferase activity1.30E-02
85GO:0008047: enzyme activator activity1.30E-02
86GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.36E-02
87GO:0030145: manganese ion binding1.36E-02
88GO:0003680: AT DNA binding1.45E-02
89GO:0008794: arsenate reductase (glutaredoxin) activity1.45E-02
90GO:0001054: RNA polymerase I activity1.45E-02
91GO:0008559: xenobiotic-transporting ATPase activity1.45E-02
92GO:0001056: RNA polymerase III activity1.59E-02
93GO:0050661: NADP binding1.71E-02
94GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.74E-02
95GO:0005315: inorganic phosphate transmembrane transporter activity1.74E-02
96GO:0005262: calcium channel activity1.74E-02
97GO:0031624: ubiquitin conjugating enzyme binding1.90E-02
98GO:0009055: electron carrier activity1.91E-02
99GO:0030553: cGMP binding2.06E-02
100GO:0003712: transcription cofactor activity2.06E-02
101GO:0004190: aspartic-type endopeptidase activity2.06E-02
102GO:0030552: cAMP binding2.06E-02
103GO:0004867: serine-type endopeptidase inhibitor activity2.06E-02
104GO:0030246: carbohydrate binding2.19E-02
105GO:0008134: transcription factor binding2.40E-02
106GO:0001046: core promoter sequence-specific DNA binding2.40E-02
107GO:0005385: zinc ion transmembrane transporter activity2.40E-02
108GO:0003954: NADH dehydrogenase activity2.40E-02
109GO:0005216: ion channel activity2.57E-02
110GO:0008324: cation transmembrane transporter activity2.57E-02
111GO:0016298: lipase activity2.70E-02
112GO:0035251: UDP-glucosyltransferase activity2.75E-02
113GO:0004298: threonine-type endopeptidase activity2.75E-02
114GO:0033612: receptor serine/threonine kinase binding2.75E-02
115GO:0004842: ubiquitin-protein transferase activity2.97E-02
116GO:0045735: nutrient reservoir activity3.08E-02
117GO:0004497: monooxygenase activity3.53E-02
118GO:0030551: cyclic nucleotide binding3.71E-02
119GO:0005451: monovalent cation:proton antiporter activity3.71E-02
120GO:0005249: voltage-gated potassium channel activity3.71E-02
121GO:0005509: calcium ion binding3.78E-02
122GO:0015035: protein disulfide oxidoreductase activity3.81E-02
123GO:0046873: metal ion transmembrane transporter activity3.91E-02
124GO:0015299: solute:proton antiporter activity4.12E-02
125GO:0010181: FMN binding4.12E-02
126GO:0044212: transcription regulatory region DNA binding4.31E-02
127GO:0019901: protein kinase binding4.33E-02
128GO:0003700: transcription factor activity, sequence-specific DNA binding4.56E-02
129GO:0004871: signal transducer activity4.66E-02
130GO:0004197: cysteine-type endopeptidase activity4.76E-02
131GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.83E-02
132GO:0015385: sodium:proton antiporter activity4.98E-02
RankGO TermAdjusted P value
1GO:0098687: chromosomal region0.00E+00
2GO:0005886: plasma membrane9.81E-05
3GO:0016021: integral component of membrane5.29E-04
4GO:0031304: intrinsic component of mitochondrial inner membrane9.56E-04
5GO:0005770: late endosome5.01E-03
6GO:0019773: proteasome core complex, alpha-subunit complex9.15E-03
7GO:0000148: 1,3-beta-D-glucan synthase complex9.15E-03
8GO:0005736: DNA-directed RNA polymerase I complex1.04E-02
9GO:0005666: DNA-directed RNA polymerase III complex1.17E-02
10GO:0000325: plant-type vacuole1.36E-02
11GO:0016602: CCAAT-binding factor complex1.74E-02
12GO:0005750: mitochondrial respiratory chain complex III1.90E-02
13GO:0070469: respiratory chain2.57E-02
14GO:0005839: proteasome core complex2.75E-02
15GO:0031225: anchored component of membrane2.80E-02
16GO:0009504: cell plate4.33E-02
17GO:0005777: peroxisome4.87E-02
18GO:0071944: cell periphery4.98E-02
Gene type



Gene DE type