co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0006412: translation	5.03E-55
4	GO:0042254: ribosome biogenesis	1.14E-27
5	GO:0002181: cytoplasmic translation	6.89E-07
6	GO:0000027: ribosomal large subunit assembly	2.44E-06
7	GO:0007005: mitochondrion organization	4.08E-06
8	GO:0030490: maturation of SSU-rRNA	5.48E-05
9	GO:0000494: box C/D snoRNA 3'-end processing	5.48E-05
10	GO:1990258: histone glutamine methylation	5.48E-05
11	GO:0006626: protein targeting to mitochondrion	8.50E-05
12	GO:0045041: protein import into mitochondrial intermembrane space	1.34E-04
13	GO:1902626: assembly of large subunit precursor of preribosome	2.28E-04
14	GO:0006986: response to unfolded protein	3.33E-04
15	GO:0070301: cellular response to hydrogen peroxide	3.33E-04
16	GO:0051085: chaperone mediated protein folding requiring cofactor	3.33E-04
17	GO:0006241: CTP biosynthetic process	3.33E-04
18	GO:0006165: nucleoside diphosphate phosphorylation	3.33E-04
19	GO:0006228: UTP biosynthetic process	3.33E-04
20	GO:0051131: chaperone-mediated protein complex assembly	3.33E-04
21	GO:0006183: GTP biosynthetic process	4.45E-04
22	GO:0031167: rRNA methylation	5.66E-04
23	GO:0006458: 'de novo' protein folding	8.25E-04
24	GO:0016444: somatic cell DNA recombination	8.25E-04
25	GO:0009955: adaxial/abaxial pattern specification	8.25E-04
26	GO:0000911: cytokinesis by cell plate formation	8.25E-04
27	GO:0042026: protein refolding	8.25E-04
28	GO:0000028: ribosomal small subunit assembly	1.11E-03
29	GO:0001510: RNA methylation	1.26E-03
30	GO:0006364: rRNA processing	1.42E-03
31	GO:0000387: spliceosomal snRNP assembly	1.58E-03
32	GO:0006820: anion transport	2.11E-03
33	GO:0010102: lateral root morphogenesis	2.30E-03
34	GO:0048467: gynoecium development	2.49E-03
35	GO:0006541: glutamine metabolic process	2.49E-03
36	GO:0009735: response to cytokinin	2.60E-03
37	GO:0030150: protein import into mitochondrial matrix	3.11E-03
38	GO:0006334: nucleosome assembly	3.54E-03
39	GO:0061077: chaperone-mediated protein folding	3.54E-03
40	GO:0008033: tRNA processing	4.71E-03
41	GO:0010090: trichome morphogenesis	6.27E-03
42	GO:0016049: cell growth	8.60E-03
43	GO:0010311: lateral root formation	9.22E-03
44	GO:0006811: ion transport	9.54E-03
45	GO:0009408: response to heat	9.65E-03
46	GO:0048527: lateral root development	9.86E-03
47	GO:0000724: double-strand break repair via homologous recombination	1.02E-02
48	GO:0046686: response to cadmium ion	1.25E-02
49	GO:0008283: cell proliferation	1.26E-02
50	GO:0009965: leaf morphogenesis	1.37E-02
51	GO:0009620: response to fungus	1.87E-02
52	GO:0000398: mRNA splicing, via spliceosome	2.21E-02
53	GO:0009651: response to salt stress	3.28E-02
54	GO:0015031: protein transport	4.41E-02
55	GO:0009723: response to ethylene	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	2.20E-63
3	GO:0003729: mRNA binding	2.71E-09
4	GO:0019843: rRNA binding	4.71E-07
5	GO:1990259: histone-glutamine methyltransferase activity	5.48E-05
6	GO:0008649: rRNA methyltransferase activity	2.28E-04
7	GO:0070181: small ribosomal subunit rRNA binding	2.28E-04
8	GO:0004550: nucleoside diphosphate kinase activity	3.33E-04
9	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.69E-04
10	GO:0016462: pyrophosphatase activity	6.92E-04
11	GO:0030515: snoRNA binding	9.62E-04
12	GO:0015288: porin activity	1.11E-03
13	GO:0008308: voltage-gated anion channel activity	1.26E-03
14	GO:0044183: protein binding involved in protein folding	1.93E-03
15	GO:0051082: unfolded protein binding	2.00E-03
16	GO:0015266: protein channel activity	2.30E-03
17	GO:0003723: RNA binding	2.72E-03
18	GO:0051087: chaperone binding	3.32E-03
19	GO:0042393: histone binding	1.15E-02
20	GO:0005507: copper ion binding	2.45E-02
21	GO:0003682: chromatin binding	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0022625: cytosolic large ribosomal subunit	8.38E-56
3	GO:0005840: ribosome	1.14E-44
4	GO:0022626: cytosolic ribosome	5.32E-35
5	GO:0005737: cytoplasm	1.90E-18
6	GO:0005730: nucleolus	7.53E-16
7	GO:0022627: cytosolic small ribosomal subunit	8.11E-13
8	GO:0005774: vacuolar membrane	2.51E-12
9	GO:0009506: plasmodesma	1.28E-09
10	GO:0005829: cytosol	1.39E-09
11	GO:0015934: large ribosomal subunit	1.63E-08
12	GO:0005773: vacuole	1.03E-06
13	GO:0016020: membrane	7.65E-06
14	GO:0005742: mitochondrial outer membrane translocase complex	2.84E-05
15	GO:0005747: mitochondrial respiratory chain complex I	1.50E-04
16	GO:0034719: SMN-Sm protein complex	2.28E-04
17	GO:0005682: U5 snRNP	4.45E-04
18	GO:0005687: U4 snRNP	5.66E-04
19	GO:0097526: spliceosomal tri-snRNP complex	5.66E-04
20	GO:0031428: box C/D snoRNP complex	6.92E-04
21	GO:0005618: cell wall	7.17E-04
22	GO:0005689: U12-type spliceosomal complex	8.25E-04
23	GO:0071004: U2-type prespliceosome	1.11E-03
24	GO:0046930: pore complex	1.26E-03
25	GO:0005685: U1 snRNP	1.41E-03
26	GO:0071011: precatalytic spliceosome	1.58E-03
27	GO:0015030: Cajal body	1.58E-03
28	GO:0005686: U2 snRNP	1.75E-03
29	GO:0071013: catalytic step 2 spliceosome	1.93E-03
30	GO:0032040: small-subunit processome	2.11E-03
31	GO:0019013: viral nucleocapsid	2.30E-03
32	GO:0005758: mitochondrial intermembrane space	3.11E-03
33	GO:0005759: mitochondrial matrix	3.12E-03
34	GO:0005741: mitochondrial outer membrane	3.54E-03
35	GO:0015935: small ribosomal subunit	3.54E-03
36	GO:0005886: plasma membrane	3.67E-03
37	GO:0005743: mitochondrial inner membrane	8.97E-03
38	GO:0009507: chloroplast	1.54E-02
39	GO:0005681: spliceosomal complex	1.75E-02
40	GO:0005732: small nucleolar ribonucleoprotein complex	2.12E-02