co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G28670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006476: protein deacetylation	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0080167: response to karrikin	1.24E-08
4	GO:0045489: pectin biosynthetic process	1.01E-06
5	GO:0009963: positive regulation of flavonoid biosynthetic process	6.10E-06
6	GO:0009813: flavonoid biosynthetic process	7.41E-06
7	GO:0009411: response to UV	2.51E-05
8	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.12E-05
9	GO:0048438: floral whorl development	1.16E-04
10	GO:0000066: mitochondrial ornithine transport	1.16E-04
11	GO:1901349: glucosinolate transport	1.16E-04
12	GO:1902265: abscisic acid homeostasis	1.16E-04
13	GO:1901537: positive regulation of DNA demethylation	1.16E-04
14	GO:0031539: positive regulation of anthocyanin metabolic process	1.16E-04
15	GO:0090449: phloem glucosinolate loading	1.16E-04
16	GO:0010218: response to far red light	1.73E-04
17	GO:0009698: phenylpropanoid metabolic process	1.86E-04
18	GO:0016051: carbohydrate biosynthetic process	2.10E-04
19	GO:0009637: response to blue light	2.10E-04
20	GO:0006006: glucose metabolic process	2.47E-04
21	GO:0019388: galactose catabolic process	2.69E-04
22	GO:0010220: positive regulation of vernalization response	2.69E-04
23	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.69E-04
24	GO:0019253: reductive pentose-phosphate cycle	2.81E-04
25	GO:0010114: response to red light	2.96E-04
26	GO:0006471: protein ADP-ribosylation	4.45E-04
27	GO:0031022: nuclear migration along microfilament	4.45E-04
28	GO:0006000: fructose metabolic process	4.45E-04
29	GO:0010017: red or far-red light signaling pathway	5.19E-04
30	GO:0009590: detection of gravity	6.38E-04
31	GO:0016117: carotenoid biosynthetic process	6.61E-04
32	GO:0000271: polysaccharide biosynthetic process	7.13E-04
33	GO:0009958: positive gravitropism	7.67E-04
34	GO:0009902: chloroplast relocation	8.47E-04
35	GO:0019464: glycine decarboxylation via glycine cleavage system	8.47E-04
36	GO:0009765: photosynthesis, light harvesting	8.47E-04
37	GO:0019252: starch biosynthetic process	8.79E-04
38	GO:0008152: metabolic process	1.06E-03
39	GO:0016123: xanthophyll biosynthetic process	1.07E-03
40	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.31E-03
41	GO:0000060: protein import into nucleus, translocation	1.31E-03
42	GO:0071555: cell wall organization	1.51E-03
43	GO:0010076: maintenance of floral meristem identity	1.56E-03
44	GO:0017148: negative regulation of translation	1.56E-03
45	GO:0009903: chloroplast avoidance movement	1.56E-03
46	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.56E-03
47	GO:0010077: maintenance of inflorescence meristem identity	1.56E-03
48	GO:0051510: regulation of unidimensional cell growth	1.84E-03
49	GO:0052543: callose deposition in cell wall	2.13E-03
50	GO:0005978: glycogen biosynthetic process	2.13E-03
51	GO:0010099: regulation of photomorphogenesis	2.43E-03
52	GO:0006002: fructose 6-phosphate metabolic process	2.43E-03
53	GO:0022900: electron transport chain	2.43E-03
54	GO:0009056: catabolic process	2.74E-03
55	GO:0009744: response to sucrose	2.80E-03
56	GO:0042546: cell wall biogenesis	2.91E-03
57	GO:0009638: phototropism	3.07E-03
58	GO:0051555: flavonol biosynthetic process	3.41E-03
59	GO:0000272: polysaccharide catabolic process	3.76E-03
60	GO:0048229: gametophyte development	3.76E-03
61	GO:0009585: red, far-red light phototransduction	3.76E-03
62	GO:0010224: response to UV-B	3.89E-03
63	GO:0016925: protein sumoylation	4.13E-03
64	GO:0010582: floral meristem determinacy	4.13E-03
65	GO:0030048: actin filament-based movement	4.50E-03
66	GO:0006094: gluconeogenesis	4.50E-03
67	GO:0005986: sucrose biosynthetic process	4.50E-03
68	GO:0010223: secondary shoot formation	4.89E-03
69	GO:0009934: regulation of meristem structural organization	4.89E-03
70	GO:0042343: indole glucosinolate metabolic process	5.29E-03
71	GO:0042753: positive regulation of circadian rhythm	5.70E-03
72	GO:0006487: protein N-linked glycosylation	6.12E-03
73	GO:0009768: photosynthesis, light harvesting in photosystem I	6.56E-03
74	GO:0098542: defense response to other organism	7.00E-03
75	GO:0031348: negative regulation of defense response	7.46E-03
76	GO:0040007: growth	7.92E-03
77	GO:0010584: pollen exine formation	8.40E-03
78	GO:0019722: calcium-mediated signaling	8.40E-03
79	GO:0006342: chromatin silencing	9.89E-03
80	GO:0009741: response to brassinosteroid	9.89E-03
81	GO:0009739: response to gibberellin	1.03E-02
82	GO:0007059: chromosome segregation	1.04E-02
83	GO:0009791: post-embryonic development	1.09E-02
84	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.15E-02
85	GO:0007264: small GTPase mediated signal transduction	1.20E-02
86	GO:0007267: cell-cell signaling	1.37E-02
87	GO:0051607: defense response to virus	1.43E-02
88	GO:0016126: sterol biosynthetic process	1.49E-02
89	GO:0009860: pollen tube growth	1.54E-02
90	GO:0009607: response to biotic stimulus	1.55E-02
91	GO:0010029: regulation of seed germination	1.55E-02
92	GO:0018298: protein-chromophore linkage	1.80E-02
93	GO:0046777: protein autophosphorylation	1.90E-02
94	GO:0044550: secondary metabolite biosynthetic process	1.93E-02
95	GO:0009853: photorespiration	2.12E-02
96	GO:0006839: mitochondrial transport	2.33E-02
97	GO:0009926: auxin polar transport	2.54E-02
98	GO:0009640: photomorphogenesis	2.54E-02
99	GO:0000209: protein polyubiquitination	2.62E-02
100	GO:0008643: carbohydrate transport	2.69E-02
101	GO:0000165: MAPK cascade	2.91E-02
102	GO:0031347: regulation of defense response	2.91E-02
103	GO:0009733: response to auxin	2.92E-02
104	GO:0009809: lignin biosynthetic process	3.15E-02
105	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-02
106	GO:0006857: oligopeptide transport	3.30E-02
107	GO:0009909: regulation of flower development	3.38E-02
108	GO:0006096: glycolytic process	3.54E-02
109	GO:0009740: gibberellic acid mediated signaling pathway	3.87E-02
110	GO:0006810: transport	4.06E-02
111	GO:0051726: regulation of cell cycle	4.21E-02
112	GO:0009742: brassinosteroid mediated signaling pathway	4.21E-02
113	GO:0005975: carbohydrate metabolic process	4.23E-02
114	GO:0009416: response to light stimulus	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0047213: anthocyanidin 3-O-glucosyltransferase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0034979: NAD-dependent protein deacetylase activity	0.00E+00
5	GO:0016711: flavonoid 3'-monooxygenase activity	0.00E+00
6	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
7	GO:0045430: chalcone isomerase activity	1.15E-05
8	GO:0016757: transferase activity, transferring glycosyl groups	7.49E-05
9	GO:0016758: transferase activity, transferring hexosyl groups	9.59E-05
10	GO:0090448: glucosinolate:proton symporter activity	1.16E-04
11	GO:0010313: phytochrome binding	1.16E-04
12	GO:0008194: UDP-glycosyltransferase activity	2.14E-04
13	GO:0004614: phosphoglucomutase activity	2.69E-04
14	GO:0010291: carotene beta-ring hydroxylase activity	2.69E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	2.69E-04
16	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.69E-04
17	GO:0000064: L-ornithine transmembrane transporter activity	2.69E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.69E-04
19	GO:0048531: beta-1,3-galactosyltransferase activity	2.69E-04
20	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.19E-04
21	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	6.38E-04
22	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.38E-04
23	GO:0001872: (1->3)-beta-D-glucan binding	6.38E-04
24	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.38E-04
25	GO:0048027: mRNA 5'-UTR binding	6.38E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.38E-04
27	GO:0031386: protein tag	1.07E-03
28	GO:0102229: amylopectin maltohydrolase activity	1.31E-03
29	GO:0042578: phosphoric ester hydrolase activity	1.31E-03
30	GO:0070403: NAD+ binding	1.56E-03
31	GO:0016161: beta-amylase activity	1.56E-03
32	GO:0019899: enzyme binding	1.84E-03
33	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.84E-03
34	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.84E-03
35	GO:0016621: cinnamoyl-CoA reductase activity	1.84E-03
36	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.13E-03
37	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.13E-03
38	GO:0016207: 4-coumarate-CoA ligase activity	2.74E-03
39	GO:0019825: oxygen binding	3.71E-03
40	GO:0008327: methyl-CpG binding	3.76E-03
41	GO:0008081: phosphoric diester hydrolase activity	4.50E-03
42	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.87E-03
43	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.87E-03
44	GO:0022857: transmembrane transporter activity	5.02E-03
45	GO:0031409: pigment binding	5.70E-03
46	GO:0051087: chaperone binding	6.56E-03
47	GO:0004176: ATP-dependent peptidase activity	7.00E-03
48	GO:0035251: UDP-glucosyltransferase activity	7.00E-03
49	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	7.60E-03
50	GO:0019901: protein kinase binding	1.09E-02
51	GO:0004518: nuclease activity	1.20E-02
52	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.37E-02
53	GO:0008237: metallopeptidase activity	1.37E-02
54	GO:0046982: protein heterodimerization activity	1.40E-02
55	GO:0016597: amino acid binding	1.43E-02
56	GO:0016168: chlorophyll binding	1.55E-02
57	GO:0008375: acetylglucosaminyltransferase activity	1.61E-02
58	GO:0030247: polysaccharide binding	1.67E-02
59	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.92E-02
60	GO:0004222: metalloendopeptidase activity	1.92E-02
61	GO:0052689: carboxylic ester hydrolase activity	1.96E-02
62	GO:0042803: protein homodimerization activity	2.23E-02
63	GO:0050661: NADP binding	2.33E-02
64	GO:0004674: protein serine/threonine kinase activity	2.40E-02
65	GO:0005506: iron ion binding	2.47E-02
66	GO:0004185: serine-type carboxypeptidase activity	2.54E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
68	GO:0009055: electron carrier activity	2.81E-02
69	GO:0051287: NAD binding	2.91E-02
70	GO:0003690: double-stranded DNA binding	3.22E-02
71	GO:0031625: ubiquitin protein ligase binding	3.38E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.63E-02
73	GO:0003677: DNA binding	3.69E-02
74	GO:0004650: polygalacturonase activity	3.79E-02
75	GO:0016874: ligase activity	3.87E-02
76	GO:0004672: protein kinase activity	4.06E-02
77	GO:0015035: protein disulfide oxidoreductase activity	4.13E-02
78	GO:0020037: heme binding	4.44E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0010319: stromule	8.60E-05
2	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.45E-04
3	GO:0009505: plant-type cell wall	5.48E-04
4	GO:0005960: glycine cleavage complex	6.38E-04
5	GO:0010369: chromocenter	1.56E-03
6	GO:0009941: chloroplast envelope	2.36E-03
7	GO:0005677: chromatin silencing complex	2.43E-03
8	GO:0000139: Golgi membrane	2.57E-03
9	GO:0009579: thylakoid	2.84E-03
10	GO:0009506: plasmodesma	3.20E-03
11	GO:0009507: chloroplast	3.65E-03
12	GO:0005765: lysosomal membrane	3.76E-03
13	GO:0030176: integral component of endoplasmic reticulum membrane	5.29E-03
14	GO:0030076: light-harvesting complex	5.29E-03
15	GO:0009535: chloroplast thylakoid membrane	6.19E-03
16	GO:0009522: photosystem I	1.04E-02
17	GO:0009523: photosystem II	1.09E-02
18	GO:0046658: anchored component of plasma membrane	1.22E-02
19	GO:0009570: chloroplast stroma	1.41E-02
20	GO:0005886: plasma membrane	1.68E-02
21	GO:0005794: Golgi apparatus	1.70E-02
22	GO:0031969: chloroplast membrane	1.78E-02
23	GO:0031225: anchored component of membrane	1.82E-02
24	GO:0016021: integral component of membrane	1.83E-02
25	GO:0000786: nucleosome	2.06E-02
26	GO:0005819: spindle	2.26E-02
27	GO:0031902: late endosome membrane	2.40E-02
28	GO:0005743: mitochondrial inner membrane	2.44E-02
29	GO:0043231: intracellular membrane-bounded organelle	2.89E-02
30	GO:0048046: apoplast	4.32E-02
31	GO:0010287: plastoglobule	4.56E-02
32	GO:0009543: chloroplast thylakoid lumen	4.74E-02
33	GO:0005623: cell	4.83E-02