co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G28230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0006105: succinate metabolic process	0.00E+00
5	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
6	GO:0019484: beta-alanine catabolic process	0.00E+00
7	GO:0006983: ER overload response	0.00E+00
8	GO:0010398: xylogalacturonan metabolic process	0.00E+00
9	GO:0009399: nitrogen fixation	1.21E-05
10	GO:1900425: negative regulation of defense response to bacterium	5.43E-05
11	GO:0035266: meristem growth	1.71E-04
12	GO:0009450: gamma-aminobutyric acid catabolic process	1.71E-04
13	GO:0007292: female gamete generation	1.71E-04
14	GO:0010036: response to boron-containing substance	1.71E-04
15	GO:0071366: cellular response to indolebutyric acid stimulus	1.71E-04
16	GO:0009865: pollen tube adhesion	1.71E-04
17	GO:0006540: glutamate decarboxylation to succinate	1.71E-04
18	GO:0046686: response to cadmium ion	1.78E-04
19	GO:0048829: root cap development	2.80E-04
20	GO:0010033: response to organic substance	3.87E-04
21	GO:0080029: cellular response to boron-containing substance levels	3.87E-04
22	GO:0051788: response to misfolded protein	3.87E-04
23	GO:0052542: defense response by callose deposition	3.87E-04
24	GO:0043066: negative regulation of apoptotic process	3.87E-04
25	GO:0016051: carbohydrate biosynthetic process	4.29E-04
26	GO:0060968: regulation of gene silencing	6.32E-04
27	GO:0042344: indole glucosinolate catabolic process	6.32E-04
28	GO:0006954: inflammatory response	6.32E-04
29	GO:0006020: inositol metabolic process	9.04E-04
30	GO:0072334: UDP-galactose transmembrane transport	9.04E-04
31	GO:0015749: monosaccharide transport	9.04E-04
32	GO:0015700: arsenite transport	9.04E-04
33	GO:0071786: endoplasmic reticulum tubular network organization	9.04E-04
34	GO:0006882: cellular zinc ion homeostasis	9.04E-04
35	GO:0046713: borate transport	9.04E-04
36	GO:0048194: Golgi vesicle budding	9.04E-04
37	GO:0033320: UDP-D-xylose biosynthetic process	1.20E-03
38	GO:0006536: glutamate metabolic process	1.20E-03
39	GO:0006878: cellular copper ion homeostasis	1.20E-03
40	GO:0006542: glutamine biosynthetic process	1.20E-03
41	GO:0005513: detection of calcium ion	1.52E-03
42	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.87E-03
43	GO:0048232: male gamete generation	1.87E-03
44	GO:0043248: proteasome assembly	1.87E-03
45	GO:0042732: D-xylose metabolic process	1.87E-03
46	GO:0010358: leaf shaping	1.87E-03
47	GO:0010337: regulation of salicylic acid metabolic process	1.87E-03
48	GO:0006014: D-ribose metabolic process	1.87E-03
49	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.87E-03
50	GO:0015691: cadmium ion transport	1.87E-03
51	GO:0048827: phyllome development	1.87E-03
52	GO:0048364: root development	2.21E-03
53	GO:0009612: response to mechanical stimulus	2.24E-03
54	GO:0031930: mitochondria-nucleus signaling pathway	2.24E-03
55	GO:0006694: steroid biosynthetic process	2.24E-03
56	GO:0098655: cation transmembrane transport	2.24E-03
57	GO:0098869: cellular oxidant detoxification	2.64E-03
58	GO:0006955: immune response	2.64E-03
59	GO:0046470: phosphatidylcholine metabolic process	2.64E-03
60	GO:0009817: defense response to fungus, incompatible interaction	2.94E-03
61	GO:0008219: cell death	2.94E-03
62	GO:0006491: N-glycan processing	3.06E-03
63	GO:1900150: regulation of defense response to fungus	3.06E-03
64	GO:0009415: response to water	3.06E-03
65	GO:0010078: maintenance of root meristem identity	3.06E-03
66	GO:0010311: lateral root formation	3.08E-03
67	GO:0006526: arginine biosynthetic process	3.50E-03
68	GO:0046685: response to arsenic-containing substance	3.95E-03
69	GO:0009821: alkaloid biosynthetic process	3.95E-03
70	GO:0090333: regulation of stomatal closure	3.95E-03
71	GO:0046916: cellular transition metal ion homeostasis	3.95E-03
72	GO:0006979: response to oxidative stress	3.99E-03
73	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.44E-03
74	GO:0071577: zinc II ion transmembrane transport	4.44E-03
75	GO:0009737: response to abscisic acid	4.61E-03
76	GO:0006535: cysteine biosynthetic process from serine	4.93E-03
77	GO:0043069: negative regulation of programmed cell death	4.93E-03
78	GO:0055114: oxidation-reduction process	5.24E-03
79	GO:0010015: root morphogenesis	5.45E-03
80	GO:0000038: very long-chain fatty acid metabolic process	5.45E-03
81	GO:0052544: defense response by callose deposition in cell wall	5.45E-03
82	GO:0006378: mRNA polyadenylation	5.45E-03
83	GO:0006855: drug transmembrane transport	5.57E-03
84	GO:0000266: mitochondrial fission	5.98E-03
85	GO:0006812: cation transport	5.99E-03
86	GO:0006813: potassium ion transport	6.43E-03
87	GO:0016192: vesicle-mediated transport	6.47E-03
88	GO:0018107: peptidyl-threonine phosphorylation	6.54E-03
89	GO:0006541: glutamine metabolic process	7.11E-03
90	GO:0009933: meristem structural organization	7.11E-03
91	GO:0009225: nucleotide-sugar metabolic process	7.69E-03
92	GO:0010167: response to nitrate	7.69E-03
93	GO:0005985: sucrose metabolic process	7.69E-03
94	GO:0090351: seedling development	7.69E-03
95	GO:0048367: shoot system development	7.86E-03
96	GO:0009626: plant-type hypersensitive response	8.11E-03
97	GO:0000162: tryptophan biosynthetic process	8.30E-03
98	GO:0019344: cysteine biosynthetic process	8.92E-03
99	GO:0045333: cellular respiration	8.92E-03
100	GO:0006487: protein N-linked glycosylation	8.92E-03
101	GO:0009269: response to desiccation	1.02E-02
102	GO:0016998: cell wall macromolecule catabolic process	1.02E-02
103	GO:0030433: ubiquitin-dependent ERAD pathway	1.09E-02
104	GO:0031348: negative regulation of defense response	1.09E-02
105	GO:0006012: galactose metabolic process	1.16E-02
106	GO:0071215: cellular response to abscisic acid stimulus	1.16E-02
107	GO:0009845: seed germination	1.24E-02
108	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.30E-02
109	GO:0015991: ATP hydrolysis coupled proton transport	1.37E-02
110	GO:0042631: cellular response to water deprivation	1.37E-02
111	GO:0042391: regulation of membrane potential	1.37E-02
112	GO:0042742: defense response to bacterium	1.44E-02
113	GO:0045489: pectin biosynthetic process	1.45E-02
114	GO:0010154: fruit development	1.45E-02
115	GO:0006885: regulation of pH	1.45E-02
116	GO:0046323: glucose import	1.45E-02
117	GO:0048544: recognition of pollen	1.52E-02
118	GO:0010183: pollen tube guidance	1.60E-02
119	GO:0009749: response to glucose	1.60E-02
120	GO:0019252: starch biosynthetic process	1.60E-02
121	GO:0002229: defense response to oomycetes	1.68E-02
122	GO:0000302: response to reactive oxygen species	1.68E-02
123	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.78E-02
124	GO:0006914: autophagy	1.93E-02
125	GO:0009738: abscisic acid-activated signaling pathway	1.98E-02
126	GO:0010286: heat acclimation	2.01E-02
127	GO:0071805: potassium ion transmembrane transport	2.01E-02
128	GO:0016126: sterol biosynthetic process	2.18E-02
129	GO:0001666: response to hypoxia	2.18E-02
130	GO:0009607: response to biotic stimulus	2.27E-02
131	GO:0010029: regulation of seed germination	2.27E-02
132	GO:0009409: response to cold	2.27E-02
133	GO:0009627: systemic acquired resistance	2.36E-02
134	GO:0042128: nitrate assimilation	2.36E-02
135	GO:0048573: photoperiodism, flowering	2.45E-02
136	GO:0006950: response to stress	2.45E-02
137	GO:0006499: N-terminal protein myristoylation	2.83E-02
138	GO:0006811: ion transport	2.83E-02
139	GO:0009631: cold acclimation	2.93E-02
140	GO:0010119: regulation of stomatal movement	2.93E-02
141	GO:0010043: response to zinc ion	2.93E-02
142	GO:0045087: innate immune response	3.12E-02
143	GO:0009651: response to salt stress	3.16E-02
144	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.16E-02
145	GO:0010200: response to chitin	3.16E-02
146	GO:0046777: protein autophosphorylation	3.27E-02
147	GO:0030001: metal ion transport	3.43E-02
148	GO:0006631: fatty acid metabolic process	3.53E-02
149	GO:0051707: response to other organism	3.74E-02
150	GO:0008283: cell proliferation	3.74E-02
151	GO:0009965: leaf morphogenesis	4.06E-02
152	GO:0007165: signal transduction	4.25E-02
153	GO:0031347: regulation of defense response	4.29E-02
154	GO:0016042: lipid catabolic process	4.37E-02
155	GO:0009809: lignin biosynthetic process	4.62E-02
156	GO:0006486: protein glycosylation	4.62E-02
157	GO:0009414: response to water deprivation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
2	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
3	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
4	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
5	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
6	GO:0008777: acetylornithine deacetylase activity	0.00E+00
7	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
8	GO:0004356: glutamate-ammonia ligase activity	3.65E-05
9	GO:0009679: hexose:proton symporter activity	1.71E-04
10	GO:0046870: cadmium ion binding	1.71E-04
11	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.71E-04
12	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.71E-04
13	GO:0003867: 4-aminobutyrate transaminase activity	1.71E-04
14	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.71E-04
15	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.87E-04
16	GO:0015105: arsenite transmembrane transporter activity	3.87E-04
17	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	3.87E-04
18	GO:0032791: lead ion binding	3.87E-04
19	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.32E-04
20	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	9.04E-04
21	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.04E-04
22	GO:0015086: cadmium ion transmembrane transporter activity	9.04E-04
23	GO:0046715: borate transmembrane transporter activity	9.04E-04
24	GO:0004834: tryptophan synthase activity	1.20E-03
25	GO:0043015: gamma-tubulin binding	1.20E-03
26	GO:0009916: alternative oxidase activity	1.20E-03
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.52E-03
28	GO:0015145: monosaccharide transmembrane transporter activity	1.52E-03
29	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.52E-03
30	GO:0048040: UDP-glucuronate decarboxylase activity	1.87E-03
31	GO:0035252: UDP-xylosyltransferase activity	1.87E-03
32	GO:0036402: proteasome-activating ATPase activity	1.87E-03
33	GO:0004124: cysteine synthase activity	2.24E-03
34	GO:0070403: NAD+ binding	2.24E-03
35	GO:0004012: phospholipid-translocating ATPase activity	2.24E-03
36	GO:0004747: ribokinase activity	2.24E-03
37	GO:0004602: glutathione peroxidase activity	2.24E-03
38	GO:0004559: alpha-mannosidase activity	2.24E-03
39	GO:0005516: calmodulin binding	2.34E-03
40	GO:0004620: phospholipase activity	2.64E-03
41	GO:0052747: sinapyl alcohol dehydrogenase activity	3.06E-03
42	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.06E-03
43	GO:0008865: fructokinase activity	3.06E-03
44	GO:0004525: ribonuclease III activity	3.06E-03
45	GO:0005096: GTPase activator activity	3.08E-03
46	GO:0004630: phospholipase D activity	3.50E-03
47	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.50E-03
48	GO:0071949: FAD binding	3.95E-03
49	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.95E-03
50	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.44E-03
51	GO:0004713: protein tyrosine kinase activity	4.93E-03
52	GO:0001054: RNA polymerase I activity	5.45E-03
53	GO:0001056: RNA polymerase III activity	5.98E-03
54	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.98E-03
55	GO:0004497: monooxygenase activity	6.06E-03
56	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.54E-03
57	GO:0008234: cysteine-type peptidase activity	7.12E-03
58	GO:0030552: cAMP binding	7.69E-03
59	GO:0004867: serine-type endopeptidase inhibitor activity	7.69E-03
60	GO:0030553: cGMP binding	7.69E-03
61	GO:0017025: TBP-class protein binding	7.69E-03
62	GO:0004674: protein serine/threonine kinase activity	8.60E-03
63	GO:0005385: zinc ion transmembrane transporter activity	8.92E-03
64	GO:0043424: protein histidine kinase binding	9.56E-03
65	GO:0005216: ion channel activity	9.56E-03
66	GO:0015079: potassium ion transmembrane transporter activity	9.56E-03
67	GO:0008324: cation transmembrane transporter activity	9.56E-03
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.18E-02
69	GO:0005509: calcium ion binding	1.28E-02
70	GO:0030170: pyridoxal phosphate binding	1.28E-02
71	GO:0030551: cyclic nucleotide binding	1.37E-02
72	GO:0005451: monovalent cation:proton antiporter activity	1.37E-02
73	GO:0005249: voltage-gated potassium channel activity	1.37E-02
74	GO:0003713: transcription coactivator activity	1.45E-02
75	GO:0046873: metal ion transmembrane transporter activity	1.45E-02
76	GO:0015299: solute:proton antiporter activity	1.52E-02
77	GO:0008017: microtubule binding	1.66E-02
78	GO:0005524: ATP binding	1.78E-02
79	GO:0015385: sodium:proton antiporter activity	1.84E-02
80	GO:0046872: metal ion binding	1.88E-02
81	GO:0008237: metallopeptidase activity	2.01E-02
82	GO:0015250: water channel activity	2.18E-02
83	GO:0051213: dioxygenase activity	2.18E-02
84	GO:0016301: kinase activity	2.30E-02
85	GO:0008375: acetylglucosaminyltransferase activity	2.36E-02
86	GO:0030247: polysaccharide binding	2.45E-02
87	GO:0004672: protein kinase activity	2.56E-02
88	GO:0015238: drug transmembrane transporter activity	2.73E-02
89	GO:0004222: metalloendopeptidase activity	2.83E-02
90	GO:0020037: heme binding	2.84E-02
91	GO:0050897: cobalt ion binding	2.93E-02
92	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.12E-02
93	GO:0005507: copper ion binding	3.20E-02
94	GO:0043621: protein self-association	3.96E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.62E-02
96	GO:0016298: lipase activity	4.74E-02
97	GO:0005506: iron ion binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.18E-08
2	GO:0016021: integral component of membrane	3.69E-05
3	GO:0005783: endoplasmic reticulum	9.60E-05
4	GO:0016328: lateral plasma membrane	6.32E-04
5	GO:0005849: mRNA cleavage factor complex	9.04E-04
6	GO:0000323: lytic vacuole	9.04E-04
7	GO:0071782: endoplasmic reticulum tubular network	9.04E-04
8	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.20E-03
9	GO:0005776: autophagosome	1.20E-03
10	GO:0005737: cytoplasm	1.76E-03
11	GO:0030173: integral component of Golgi membrane	2.24E-03
12	GO:0031597: cytosolic proteasome complex	2.24E-03
13	GO:0031595: nuclear proteasome complex	2.64E-03
14	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.06E-03
15	GO:0005736: DNA-directed RNA polymerase I complex	3.95E-03
16	GO:0005774: vacuolar membrane	4.03E-03
17	GO:0008540: proteasome regulatory particle, base subcomplex	4.44E-03
18	GO:0005666: DNA-directed RNA polymerase III complex	4.44E-03
19	GO:0005794: Golgi apparatus	5.28E-03
20	GO:0016020: membrane	7.43E-03
21	GO:0030176: integral component of endoplasmic reticulum membrane	7.69E-03
22	GO:0010008: endosome membrane	7.86E-03
23	GO:0070469: respiratory chain	9.56E-03
24	GO:0005802: trans-Golgi network	1.01E-02
25	GO:0031410: cytoplasmic vesicle	1.09E-02
26	GO:0009506: plasmodesma	1.29E-02
27	GO:0030136: clathrin-coated vesicle	1.30E-02
28	GO:0031965: nuclear membrane	1.60E-02
29	GO:0005773: vacuole	2.67E-02
30	GO:0005789: endoplasmic reticulum membrane	2.71E-02
31	GO:0005768: endosome	4.34E-02
32	GO:0031966: mitochondrial membrane	4.40E-02
33	GO:0000502: proteasome complex	4.62E-02
34	GO:0005635: nuclear envelope	4.85E-02