Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G27000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019484: beta-alanine catabolic process0.00E+00
2GO:0033587: shikimate biosynthetic process0.00E+00
3GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
4GO:0019481: L-alanine catabolic process, by transamination0.00E+00
5GO:0010398: xylogalacturonan metabolic process0.00E+00
6GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
7GO:0045185: maintenance of protein location0.00E+00
8GO:0006182: cGMP biosynthetic process0.00E+00
9GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
10GO:0006592: ornithine biosynthetic process0.00E+00
11GO:0032780: negative regulation of ATPase activity0.00E+00
12GO:0043269: regulation of ion transport0.00E+00
13GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
14GO:0046109: uridine biosynthetic process0.00E+00
15GO:0010360: negative regulation of anion channel activity0.00E+00
16GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
17GO:0006105: succinate metabolic process0.00E+00
18GO:0046686: response to cadmium ion3.57E-06
19GO:0009617: response to bacterium3.89E-06
20GO:0010150: leaf senescence2.08E-05
21GO:0071456: cellular response to hypoxia2.56E-05
22GO:0006468: protein phosphorylation3.40E-05
23GO:0006542: glutamine biosynthetic process1.15E-04
24GO:0006536: glutamate metabolic process1.15E-04
25GO:0055114: oxidation-reduction process1.85E-04
26GO:0000162: tryptophan biosynthetic process2.19E-04
27GO:0006014: D-ribose metabolic process2.53E-04
28GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.53E-04
29GO:0010036: response to boron-containing substance4.48E-04
30GO:0009865: pollen tube adhesion4.48E-04
31GO:0006540: glutamate decarboxylation to succinate4.48E-04
32GO:1902361: mitochondrial pyruvate transmembrane transport4.48E-04
33GO:0080120: CAAX-box protein maturation4.48E-04
34GO:0035266: meristem growth4.48E-04
35GO:0009450: gamma-aminobutyric acid catabolic process4.48E-04
36GO:0071586: CAAX-box protein processing4.48E-04
37GO:0007292: female gamete generation4.48E-04
38GO:0051245: negative regulation of cellular defense response4.48E-04
39GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.48E-04
40GO:0006481: C-terminal protein methylation4.48E-04
41GO:0009061: anaerobic respiration5.46E-04
42GO:0051707: response to other organism5.84E-04
43GO:0010120: camalexin biosynthetic process6.66E-04
44GO:0009699: phenylpropanoid biosynthetic process6.66E-04
45GO:0006850: mitochondrial pyruvate transport9.67E-04
46GO:0015865: purine nucleotide transport9.67E-04
47GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.67E-04
48GO:0051788: response to misfolded protein9.67E-04
49GO:0052542: defense response by callose deposition9.67E-04
50GO:0051258: protein polymerization9.67E-04
51GO:0019441: tryptophan catabolic process to kynurenine9.67E-04
52GO:0060919: auxin influx9.67E-04
53GO:0015914: phospholipid transport9.67E-04
54GO:0010033: response to organic substance9.67E-04
55GO:0080029: cellular response to boron-containing substance levels9.67E-04
56GO:0043069: negative regulation of programmed cell death1.09E-03
57GO:0048367: shoot system development1.24E-03
58GO:0009682: induced systemic resistance1.26E-03
59GO:0009626: plant-type hypersensitive response1.30E-03
60GO:0000266: mitochondrial fission1.44E-03
61GO:0042128: nitrate assimilation1.51E-03
62GO:0010359: regulation of anion channel activity1.57E-03
63GO:0080055: low-affinity nitrate transport1.57E-03
64GO:0051176: positive regulation of sulfur metabolic process1.57E-03
65GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.57E-03
66GO:0060968: regulation of gene silencing1.57E-03
67GO:0048281: inflorescence morphogenesis1.57E-03
68GO:0008219: cell death1.84E-03
69GO:0070588: calcium ion transmembrane transport2.07E-03
70GO:0009399: nitrogen fixation2.28E-03
71GO:0015700: arsenite transport2.28E-03
72GO:0001676: long-chain fatty acid metabolic process2.28E-03
73GO:0010116: positive regulation of abscisic acid biosynthetic process2.28E-03
74GO:0046713: borate transport2.28E-03
75GO:0006020: inositol metabolic process2.28E-03
76GO:0009052: pentose-phosphate shunt, non-oxidative branch2.28E-03
77GO:0006612: protein targeting to membrane2.28E-03
78GO:0046902: regulation of mitochondrial membrane permeability2.28E-03
79GO:0045087: innate immune response2.49E-03
80GO:0046777: protein autophosphorylation2.84E-03
81GO:0080142: regulation of salicylic acid biosynthetic process3.06E-03
82GO:0033320: UDP-D-xylose biosynthetic process3.06E-03
83GO:1902584: positive regulation of response to water deprivation3.06E-03
84GO:0010363: regulation of plant-type hypersensitive response3.06E-03
85GO:0016998: cell wall macromolecule catabolic process3.11E-03
86GO:0031408: oxylipin biosynthetic process3.11E-03
87GO:0030433: ubiquitin-dependent ERAD pathway3.40E-03
88GO:0016226: iron-sulfur cluster assembly3.40E-03
89GO:0007029: endoplasmic reticulum organization3.93E-03
90GO:0000304: response to singlet oxygen3.93E-03
91GO:0009697: salicylic acid biosynthetic process3.93E-03
92GO:0030308: negative regulation of cell growth3.93E-03
93GO:0050832: defense response to fungus4.63E-03
94GO:0010337: regulation of salicylic acid metabolic process4.86E-03
95GO:0010315: auxin efflux4.86E-03
96GO:0006561: proline biosynthetic process4.86E-03
97GO:0048827: phyllome development4.86E-03
98GO:0048232: male gamete generation4.86E-03
99GO:0043248: proteasome assembly4.86E-03
100GO:0070814: hydrogen sulfide biosynthetic process4.86E-03
101GO:0042732: D-xylose metabolic process4.86E-03
102GO:1902456: regulation of stomatal opening4.86E-03
103GO:1900425: negative regulation of defense response to bacterium4.86E-03
104GO:0009809: lignin biosynthetic process5.05E-03
105GO:0006508: proteolysis5.07E-03
106GO:0048544: recognition of pollen5.49E-03
107GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.87E-03
108GO:0019252: starch biosynthetic process5.89E-03
109GO:0009851: auxin biosynthetic process5.89E-03
110GO:0042742: defense response to bacterium5.97E-03
111GO:0006979: response to oxidative stress6.07E-03
112GO:0000302: response to reactive oxygen species6.31E-03
113GO:0009630: gravitropism6.75E-03
114GO:0010583: response to cyclopentenone6.75E-03
115GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.93E-03
116GO:1902074: response to salt6.93E-03
117GO:0006955: immune response6.93E-03
118GO:1900056: negative regulation of leaf senescence6.93E-03
119GO:0070370: cellular heat acclimation6.93E-03
120GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.93E-03
121GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.07E-03
122GO:0009819: drought recovery8.07E-03
123GO:0006605: protein targeting8.07E-03
124GO:0010078: maintenance of root meristem identity8.07E-03
125GO:2000070: regulation of response to water deprivation8.07E-03
126GO:0006506: GPI anchor biosynthetic process8.07E-03
127GO:0016559: peroxisome fission8.07E-03
128GO:0030091: protein repair8.07E-03
129GO:0001666: response to hypoxia9.16E-03
130GO:0006526: arginine biosynthetic process9.27E-03
131GO:0010204: defense response signaling pathway, resistance gene-independent9.27E-03
132GO:0009808: lignin metabolic process9.27E-03
133GO:0080167: response to karrikin9.81E-03
134GO:0090333: regulation of stomatal closure1.05E-02
135GO:0010112: regulation of systemic acquired resistance1.05E-02
136GO:0007338: single fertilization1.05E-02
137GO:0046685: response to arsenic-containing substance1.05E-02
138GO:0009821: alkaloid biosynthetic process1.05E-02
139GO:0090305: nucleic acid phosphodiester bond hydrolysis1.05E-02
140GO:0006098: pentose-phosphate shunt1.05E-02
141GO:0044550: secondary metabolite biosynthetic process1.11E-02
142GO:0008202: steroid metabolic process1.18E-02
143GO:0009738: abscisic acid-activated signaling pathway1.28E-02
144GO:0009870: defense response signaling pathway, resistance gene-dependent1.32E-02
145GO:0006535: cysteine biosynthetic process from serine1.32E-02
146GO:0000103: sulfate assimilation1.32E-02
147GO:0006032: chitin catabolic process1.32E-02
148GO:0009688: abscisic acid biosynthetic process1.32E-02
149GO:0048829: root cap development1.32E-02
150GO:0007064: mitotic sister chromatid cohesion1.32E-02
151GO:0052544: defense response by callose deposition in cell wall1.46E-02
152GO:0000272: polysaccharide catabolic process1.46E-02
153GO:0030148: sphingolipid biosynthetic process1.46E-02
154GO:0010015: root morphogenesis1.46E-02
155GO:0035556: intracellular signal transduction1.49E-02
156GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.61E-02
157GO:0071365: cellular response to auxin stimulus1.61E-02
158GO:0015706: nitrate transport1.61E-02
159GO:0032259: methylation1.66E-02
160GO:0055046: microgametogenesis1.77E-02
161GO:0009718: anthocyanin-containing compound biosynthetic process1.77E-02
162GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.77E-02
163GO:0006631: fatty acid metabolic process1.81E-02
164GO:0007166: cell surface receptor signaling pathway1.89E-02
165GO:0006541: glutamine metabolic process1.92E-02
166GO:0002237: response to molecule of bacterial origin1.92E-02
167GO:0009933: meristem structural organization1.92E-02
168GO:0010540: basipetal auxin transport1.92E-02
169GO:0034605: cellular response to heat1.92E-02
170GO:0009926: auxin polar transport1.97E-02
171GO:0010167: response to nitrate2.09E-02
172GO:0005985: sucrose metabolic process2.09E-02
173GO:0090351: seedling development2.09E-02
174GO:0010053: root epidermal cell differentiation2.09E-02
175GO:0009225: nucleotide-sugar metabolic process2.09E-02
176GO:0009863: salicylic acid mediated signaling pathway2.43E-02
177GO:2000377: regulation of reactive oxygen species metabolic process2.43E-02
178GO:0005992: trehalose biosynthetic process2.43E-02
179GO:0019344: cysteine biosynthetic process2.43E-02
180GO:0080147: root hair cell development2.43E-02
181GO:0006813: potassium ion transport2.65E-02
182GO:0048278: vesicle docking2.79E-02
183GO:0009734: auxin-activated signaling pathway2.94E-02
184GO:0007005: mitochondrion organization2.97E-02
185GO:0071215: cellular response to abscisic acid stimulus3.16E-02
186GO:0010227: floral organ abscission3.16E-02
187GO:0006012: galactose metabolic process3.16E-02
188GO:0009561: megagametogenesis3.36E-02
189GO:0010584: pollen exine formation3.36E-02
190GO:0009620: response to fungus3.45E-02
191GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.56E-02
192GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.76E-02
193GO:0018105: peptidyl-serine phosphorylation3.89E-02
194GO:0045489: pectin biosynthetic process3.96E-02
195GO:0010154: fruit development3.96E-02
196GO:0006885: regulation of pH3.96E-02
197GO:0061025: membrane fusion4.17E-02
198GO:0010183: pollen tube guidance4.38E-02
199GO:0009749: response to glucose4.38E-02
200GO:0071554: cell wall organization or biogenesis4.60E-02
201GO:0002229: defense response to oomycetes4.60E-02
202GO:0010193: response to ozone4.60E-02
203GO:0016032: viral process4.82E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives0.00E+00
3GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
4GO:0008777: acetylornithine deacetylase activity0.00E+00
5GO:0042030: ATPase inhibitor activity0.00E+00
6GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
7GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
8GO:0080138: borate uptake transmembrane transporter activity0.00E+00
9GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
10GO:0046424: ferulate 5-hydroxylase activity0.00E+00
11GO:0016301: kinase activity2.12E-06
12GO:0005524: ATP binding4.80E-06
13GO:0004383: guanylate cyclase activity3.05E-05
14GO:0004674: protein serine/threonine kinase activity9.12E-05
15GO:0004834: tryptophan synthase activity1.15E-04
16GO:0005496: steroid binding1.78E-04
17GO:0004356: glutamate-ammonia ligase activity1.78E-04
18GO:0036402: proteasome-activating ATPase activity2.53E-04
19GO:0004747: ribokinase activity3.40E-04
20GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.40E-04
21GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity4.48E-04
22GO:0003867: 4-aminobutyrate transaminase activity4.48E-04
23GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.48E-04
24GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity4.48E-04
25GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.48E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity4.48E-04
27GO:0033984: indole-3-glycerol-phosphate lyase activity4.48E-04
28GO:0008865: fructokinase activity5.46E-04
29GO:0071949: FAD binding7.98E-04
30GO:0032934: sterol binding9.67E-04
31GO:0004061: arylformamidase activity9.67E-04
32GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding9.67E-04
33GO:0015105: arsenite transmembrane transporter activity9.67E-04
34GO:0004750: ribulose-phosphate 3-epimerase activity9.67E-04
35GO:0045140: inositol phosphoceramide synthase activity9.67E-04
36GO:0005516: calmodulin binding1.01E-03
37GO:0004713: protein tyrosine kinase activity1.09E-03
38GO:0008171: O-methyltransferase activity1.09E-03
39GO:0051213: dioxygenase activity1.31E-03
40GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.57E-03
41GO:0004751: ribose-5-phosphate isomerase activity1.57E-03
42GO:0050833: pyruvate transmembrane transporter activity1.57E-03
43GO:0004781: sulfate adenylyltransferase (ATP) activity1.57E-03
44GO:0016805: dipeptidase activity1.57E-03
45GO:0080054: low-affinity nitrate transmembrane transporter activity1.57E-03
46GO:0004324: ferredoxin-NADP+ reductase activity1.57E-03
47GO:0008430: selenium binding1.57E-03
48GO:0005047: signal recognition particle binding1.57E-03
49GO:0005388: calcium-transporting ATPase activity1.64E-03
50GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.73E-03
51GO:0017025: TBP-class protein binding2.07E-03
52GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.22E-03
53GO:0020037: heme binding2.24E-03
54GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.28E-03
55GO:0046715: borate transmembrane transporter activity2.28E-03
56GO:0004351: glutamate decarboxylase activity2.28E-03
57GO:0008276: protein methyltransferase activity2.28E-03
58GO:0001653: peptide receptor activity2.28E-03
59GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.49E-03
60GO:0004031: aldehyde oxidase activity3.06E-03
61GO:0050302: indole-3-acetaldehyde oxidase activity3.06E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.06E-03
63GO:0010328: auxin influx transmembrane transporter activity3.06E-03
64GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.93E-03
65GO:0005471: ATP:ADP antiporter activity3.93E-03
66GO:0045431: flavonol synthase activity3.93E-03
67GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.96E-03
68GO:0035252: UDP-xylosyltransferase activity4.86E-03
69GO:0048040: UDP-glucuronate decarboxylase activity4.86E-03
70GO:0004029: aldehyde dehydrogenase (NAD) activity4.86E-03
71GO:0004672: protein kinase activity5.11E-03
72GO:0005506: iron ion binding5.77E-03
73GO:0102391: decanoate--CoA ligase activity5.87E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity5.87E-03
75GO:0004124: cysteine synthase activity5.87E-03
76GO:0070403: NAD+ binding5.87E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.87E-03
78GO:0008143: poly(A) binding6.93E-03
79GO:0004620: phospholipase activity6.93E-03
80GO:0004467: long-chain fatty acid-CoA ligase activity6.93E-03
81GO:0008235: metalloexopeptidase activity6.93E-03
82GO:0102425: myricetin 3-O-glucosyltransferase activity6.93E-03
83GO:0102360: daphnetin 3-O-glucosyltransferase activity6.93E-03
84GO:0008121: ubiquinol-cytochrome-c reductase activity6.93E-03
85GO:0004033: aldo-keto reductase (NADP) activity8.07E-03
86GO:0047893: flavonol 3-O-glucosyltransferase activity8.07E-03
87GO:0004034: aldose 1-epimerase activity8.07E-03
88GO:0016746: transferase activity, transferring acyl groups8.23E-03
89GO:0050660: flavin adenine dinucleotide binding8.82E-03
90GO:0008142: oxysterol binding9.27E-03
91GO:0008233: peptidase activity9.56E-03
92GO:0004497: monooxygenase activity9.81E-03
93GO:0009931: calcium-dependent protein serine/threonine kinase activity1.02E-02
94GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.05E-02
95GO:0030247: polysaccharide binding1.08E-02
96GO:0004683: calmodulin-dependent protein kinase activity1.08E-02
97GO:0016491: oxidoreductase activity1.08E-02
98GO:0030955: potassium ion binding1.18E-02
99GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.18E-02
100GO:0004743: pyruvate kinase activity1.18E-02
101GO:0009672: auxin:proton symporter activity1.18E-02
102GO:0030170: pyridoxal phosphate binding1.21E-02
103GO:0004568: chitinase activity1.32E-02
104GO:0008047: enzyme activator activity1.32E-02
105GO:0004177: aminopeptidase activity1.46E-02
106GO:0008559: xenobiotic-transporting ATPase activity1.46E-02
107GO:0047372: acylglycerol lipase activity1.46E-02
108GO:0005543: phospholipid binding1.46E-02
109GO:0004712: protein serine/threonine/tyrosine kinase activity1.66E-02
110GO:0004022: alcohol dehydrogenase (NAD) activity1.77E-02
111GO:0010329: auxin efflux transmembrane transporter activity1.77E-02
112GO:0004364: glutathione transferase activity1.89E-02
113GO:0031624: ubiquitin conjugating enzyme binding1.92E-02
114GO:0004175: endopeptidase activity1.92E-02
115GO:0009055: electron carrier activity1.96E-02
116GO:0003824: catalytic activity2.00E-02
117GO:0004867: serine-type endopeptidase inhibitor activity2.09E-02
118GO:0008061: chitin binding2.09E-02
119GO:0051537: 2 iron, 2 sulfur cluster binding2.13E-02
120GO:0030246: carbohydrate binding2.26E-02
121GO:0051536: iron-sulfur cluster binding2.43E-02
122GO:0031418: L-ascorbic acid binding2.43E-02
123GO:0043130: ubiquitin binding2.43E-02
124GO:0015079: potassium ion transmembrane transporter activity2.61E-02
125GO:0043424: protein histidine kinase binding2.61E-02
126GO:0008168: methyltransferase activity2.64E-02
127GO:0004176: ATP-dependent peptidase activity2.79E-02
128GO:0008408: 3'-5' exonuclease activity2.79E-02
129GO:0035251: UDP-glucosyltransferase activity2.79E-02
130GO:0046872: metal ion binding3.04E-02
131GO:0004499: N,N-dimethylaniline monooxygenase activity3.36E-02
132GO:0005451: monovalent cation:proton antiporter activity3.76E-02
133GO:0061630: ubiquitin protein ligase activity3.84E-02
134GO:0005509: calcium ion binding3.89E-02
135GO:0015035: protein disulfide oxidoreductase activity3.89E-02
136GO:0015299: solute:proton antiporter activity4.17E-02
137GO:0010181: FMN binding4.17E-02
138GO:0016853: isomerase activity4.17E-02
139GO:0042803: protein homodimerization activity4.76E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0005886: plasma membrane1.72E-08
3GO:0016021: integral component of membrane6.49E-07
4GO:0005829: cytosol6.69E-07
5GO:0005783: endoplasmic reticulum1.83E-05
6GO:0016020: membrane3.21E-04
7GO:0031597: cytosolic proteasome complex3.40E-04
8GO:0031595: nuclear proteasome complex4.37E-04
9GO:0045252: oxoglutarate dehydrogenase complex4.48E-04
10GO:0008540: proteasome regulatory particle, base subcomplex9.39E-04
11GO:0005901: caveola9.67E-04
12GO:0005774: vacuolar membrane1.20E-03
13GO:0016328: lateral plasma membrane1.57E-03
14GO:0005789: endoplasmic reticulum membrane2.06E-03
15GO:0000502: proteasome complex5.05E-03
16GO:0031305: integral component of mitochondrial inner membrane8.07E-03
17GO:0005778: peroxisomal membrane8.15E-03
18GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.27E-03
19GO:0005773: vacuole9.95E-03
20GO:0010494: cytoplasmic stress granule1.05E-02
21GO:0090404: pollen tube tip1.46E-02
22GO:0005750: mitochondrial respiratory chain complex III1.92E-02
23GO:0030176: integral component of endoplasmic reticulum membrane2.09E-02
24GO:0005794: Golgi apparatus2.49E-02
25GO:0005741: mitochondrial outer membrane2.79E-02
26GO:0005770: late endosome3.96E-02
Gene type



Gene DE type