Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G25520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032497: detection of lipopolysaccharide0.00E+00
2GO:0019484: beta-alanine catabolic process0.00E+00
3GO:0046459: short-chain fatty acid metabolic process0.00E+00
4GO:0033587: shikimate biosynthetic process0.00E+00
5GO:0006725: cellular aromatic compound metabolic process0.00E+00
6GO:0019481: L-alanine catabolic process, by transamination0.00E+00
7GO:0010241: ent-kaurene oxidation to kaurenoic acid0.00E+00
8GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
9GO:0015833: peptide transport0.00E+00
10GO:0006105: succinate metabolic process0.00E+00
11GO:0048544: recognition of pollen1.84E-04
12GO:0006635: fatty acid beta-oxidation2.23E-04
13GO:0009865: pollen tube adhesion2.25E-04
14GO:0035344: hypoxanthine transport2.25E-04
15GO:0071366: cellular response to indolebutyric acid stimulus2.25E-04
16GO:0006540: glutamate decarboxylation to succinate2.25E-04
17GO:0098721: uracil import across plasma membrane2.25E-04
18GO:0098702: adenine import across plasma membrane2.25E-04
19GO:0046167: glycerol-3-phosphate biosynthetic process2.25E-04
20GO:0035266: meristem growth2.25E-04
21GO:0098710: guanine import across plasma membrane2.25E-04
22GO:0009450: gamma-aminobutyric acid catabolic process2.25E-04
23GO:0007292: female gamete generation2.25E-04
24GO:1900060: negative regulation of ceramide biosynthetic process2.25E-04
25GO:1990641: response to iron ion starvation2.25E-04
26GO:1903409: reactive oxygen species biosynthetic process2.25E-04
27GO:0006098: pentose-phosphate shunt2.95E-04
28GO:0001666: response to hypoxia3.67E-04
29GO:0015865: purine nucleotide transport5.00E-04
30GO:0042939: tripeptide transport5.00E-04
31GO:0051788: response to misfolded protein5.00E-04
32GO:0030187: melatonin biosynthetic process5.00E-04
33GO:2000693: positive regulation of seed maturation5.00E-04
34GO:0052542: defense response by callose deposition5.00E-04
35GO:0009308: amine metabolic process5.00E-04
36GO:0009257: 10-formyltetrahydrofolate biosynthetic process5.00E-04
37GO:0090156: cellular sphingolipid homeostasis5.00E-04
38GO:0032509: endosome transport via multivesicular body sorting pathway5.00E-04
39GO:0010033: response to organic substance5.00E-04
40GO:0006641: triglyceride metabolic process5.00E-04
41GO:0006101: citrate metabolic process5.00E-04
42GO:0045087: innate immune response6.99E-04
43GO:0010150: leaf senescence7.76E-04
44GO:0019563: glycerol catabolic process8.13E-04
45GO:0060968: regulation of gene silencing8.13E-04
46GO:0042344: indole glucosinolate catabolic process8.13E-04
47GO:0006954: inflammatory response8.13E-04
48GO:0034976: response to endoplasmic reticulum stress8.64E-04
49GO:0048364: root development8.97E-04
50GO:0015749: monosaccharide transport1.16E-03
51GO:0006809: nitric oxide biosynthetic process1.16E-03
52GO:0009399: nitrogen fixation1.16E-03
53GO:0009963: positive regulation of flavonoid biosynthetic process1.16E-03
54GO:0006882: cellular zinc ion homeostasis1.16E-03
55GO:0000578: embryonic axis specification1.16E-03
56GO:0051259: protein oligomerization1.16E-03
57GO:0019438: aromatic compound biosynthetic process1.16E-03
58GO:0006624: vacuolar protein processing1.16E-03
59GO:0006020: inositol metabolic process1.16E-03
60GO:0070301: cellular response to hydrogen peroxide1.16E-03
61GO:0046902: regulation of mitochondrial membrane permeability1.16E-03
62GO:0072334: UDP-galactose transmembrane transport1.16E-03
63GO:0009113: purine nucleobase biosynthetic process1.16E-03
64GO:0006072: glycerol-3-phosphate metabolic process1.16E-03
65GO:0071215: cellular response to abscisic acid stimulus1.36E-03
66GO:0009809: lignin biosynthetic process1.39E-03
67GO:0006468: protein phosphorylation1.47E-03
68GO:0010188: response to microbial phytotoxin1.54E-03
69GO:0006878: cellular copper ion homeostasis1.54E-03
70GO:0042938: dipeptide transport1.54E-03
71GO:0006542: glutamine biosynthetic process1.54E-03
72GO:0010222: stem vascular tissue pattern formation1.54E-03
73GO:1902584: positive regulation of response to water deprivation1.54E-03
74GO:0006536: glutamate metabolic process1.54E-03
75GO:0046686: response to cadmium ion1.66E-03
76GO:0048367: shoot system development1.79E-03
77GO:0009626: plant-type hypersensitive response1.86E-03
78GO:0046323: glucose import1.87E-03
79GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA1.97E-03
80GO:0042742: defense response to bacterium2.25E-03
81GO:0006979: response to oxidative stress2.29E-03
82GO:0010337: regulation of salicylic acid metabolic process2.43E-03
83GO:0006014: D-ribose metabolic process2.43E-03
84GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.43E-03
85GO:0015691: cadmium ion transport2.43E-03
86GO:0048827: phyllome development2.43E-03
87GO:0016070: RNA metabolic process2.43E-03
88GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.43E-03
89GO:0048232: male gamete generation2.43E-03
90GO:0043248: proteasome assembly2.43E-03
91GO:0042732: D-xylose metabolic process2.43E-03
92GO:0006694: steroid biosynthetic process2.91E-03
93GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.91E-03
94GO:0071669: plant-type cell wall organization or biogenesis3.43E-03
95GO:0006333: chromatin assembly or disassembly3.43E-03
96GO:0009396: folic acid-containing compound biosynthetic process3.43E-03
97GO:0010044: response to aluminum ion3.43E-03
98GO:0006955: immune response3.43E-03
99GO:0046470: phosphatidylcholine metabolic process3.43E-03
100GO:0009395: phospholipid catabolic process3.43E-03
101GO:0070370: cellular heat acclimation3.43E-03
102GO:0010078: maintenance of root meristem identity3.98E-03
103GO:0006102: isocitrate metabolic process3.98E-03
104GO:0016559: peroxisome fission3.98E-03
105GO:0006644: phospholipid metabolic process3.98E-03
106GO:0009061: anaerobic respiration3.98E-03
107GO:0008219: cell death4.31E-03
108GO:0048767: root hair elongation4.53E-03
109GO:0009808: lignin metabolic process4.56E-03
110GO:0010468: regulation of gene expression5.44E-03
111GO:0006099: tricarboxylic acid cycle5.71E-03
112GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.79E-03
113GO:0008202: steroid metabolic process5.79E-03
114GO:0035999: tetrahydrofolate interconversion5.79E-03
115GO:0006535: cysteine biosynthetic process from serine6.45E-03
116GO:0048829: root cap development6.45E-03
117GO:0009641: shade avoidance6.45E-03
118GO:0051555: flavonol biosynthetic process6.45E-03
119GO:0007064: mitotic sister chromatid cohesion6.45E-03
120GO:0043085: positive regulation of catalytic activity7.13E-03
121GO:0052544: defense response by callose deposition in cell wall7.13E-03
122GO:0030148: sphingolipid biosynthetic process7.13E-03
123GO:0006378: mRNA polyadenylation7.13E-03
124GO:0010015: root morphogenesis7.13E-03
125GO:0071365: cellular response to auxin stimulus7.84E-03
126GO:0006807: nitrogen compound metabolic process8.57E-03
127GO:0009651: response to salt stress8.80E-03
128GO:0009611: response to wounding9.26E-03
129GO:0006541: glutamine metabolic process9.33E-03
130GO:0007034: vacuolar transport9.33E-03
131GO:0002237: response to molecule of bacterial origin9.33E-03
132GO:0009933: meristem structural organization9.33E-03
133GO:0034605: cellular response to heat9.33E-03
134GO:0035556: intracellular signal transduction9.73E-03
135GO:0010167: response to nitrate1.01E-02
136GO:0005985: sucrose metabolic process1.01E-02
137GO:0090351: seedling development1.01E-02
138GO:0010053: root epidermal cell differentiation1.01E-02
139GO:0007031: peroxisome organization1.01E-02
140GO:0016192: vesicle-mediated transport1.06E-02
141GO:0000162: tryptophan biosynthetic process1.09E-02
142GO:0007010: cytoskeleton organization1.17E-02
143GO:0019344: cysteine biosynthetic process1.17E-02
144GO:0045454: cell redox homeostasis1.25E-02
145GO:0031408: oxylipin biosynthetic process1.34E-02
146GO:0030433: ubiquitin-dependent ERAD pathway1.43E-02
147GO:0035428: hexose transmembrane transport1.43E-02
148GO:0031348: negative regulation of defense response1.43E-02
149GO:0071456: cellular response to hypoxia1.43E-02
150GO:0009686: gibberellin biosynthetic process1.53E-02
151GO:0040007: growth1.53E-02
152GO:0051028: mRNA transport1.71E-02
153GO:0000271: polysaccharide biosynthetic process1.81E-02
154GO:0080022: primary root development1.81E-02
155GO:0042391: regulation of membrane potential1.81E-02
156GO:0015991: ATP hydrolysis coupled proton transport1.81E-02
157GO:0042631: cellular response to water deprivation1.81E-02
158GO:0010154: fruit development1.91E-02
159GO:0010182: sugar mediated signaling pathway1.91E-02
160GO:0008360: regulation of cell shape1.91E-02
161GO:0006520: cellular amino acid metabolic process1.91E-02
162GO:0009646: response to absence of light2.01E-02
163GO:0010183: pollen tube guidance2.11E-02
164GO:0009749: response to glucose2.11E-02
165GO:0019252: starch biosynthetic process2.11E-02
166GO:0008654: phospholipid biosynthetic process2.11E-02
167GO:0071281: cellular response to iron ion2.43E-02
168GO:0010252: auxin homeostasis2.54E-02
169GO:0010286: heat acclimation2.65E-02
170GO:0051607: defense response to virus2.77E-02
171GO:0016126: sterol biosynthetic process2.88E-02
172GO:0009733: response to auxin3.06E-02
173GO:0009627: systemic acquired resistance3.12E-02
174GO:0042128: nitrate assimilation3.12E-02
175GO:0048573: photoperiodism, flowering3.24E-02
176GO:0009817: defense response to fungus, incompatible interaction3.48E-02
177GO:0030244: cellulose biosynthetic process3.48E-02
178GO:0009826: unidimensional cell growth3.50E-02
179GO:0009832: plant-type cell wall biogenesis3.61E-02
180GO:0010311: lateral root formation3.61E-02
181GO:0006811: ion transport3.73E-02
182GO:0006499: N-terminal protein myristoylation3.73E-02
183GO:0009631: cold acclimation3.86E-02
184GO:0010043: response to zinc ion3.86E-02
185GO:0007568: aging3.86E-02
186GO:0006865: amino acid transport3.99E-02
187GO:0009723: response to ethylene4.19E-02
188GO:0055085: transmembrane transport4.49E-02
189GO:0080167: response to karrikin4.49E-02
190GO:0006839: mitochondrial transport4.52E-02
191GO:0006457: protein folding4.60E-02
192GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.64E-02
193GO:0046777: protein autophosphorylation4.80E-02
194GO:0044550: secondary metabolite biosynthetic process4.87E-02
195GO:0009640: photomorphogenesis4.93E-02
196GO:0009926: auxin polar transport4.93E-02
197GO:0009744: response to sucrose4.93E-02
198GO:0051707: response to other organism4.93E-02
RankGO TermAdjusted P value
1GO:0052616: ent-kaur-16-en-19-ol oxidase activity0.00E+00
2GO:0052615: ent-kaurene oxidase activity0.00E+00
3GO:0015197: peptide transporter activity0.00E+00
4GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
5GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
6GO:0004370: glycerol kinase activity0.00E+00
7GO:0015334: high-affinity oligopeptide transporter activity0.00E+00
8GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
9GO:0052617: ent-kaur-16-en-19-al oxidase activity0.00E+00
10GO:0030755: quercetin 3-O-methyltransferase activity0.00E+00
11GO:0033799: myricetin 3'-O-methyltransferase activity0.00E+00
12GO:0047205: quinate O-hydroxycinnamoyltransferase activity0.00E+00
13GO:0047172: shikimate O-hydroxycinnamoyltransferase activity0.00E+00
14GO:0047763: caffeate O-methyltransferase activity0.00E+00
15GO:0030744: luteolin O-methyltransferase activity0.00E+00
16GO:0019211: phosphatase activator activity0.00E+00
17GO:0009045: xylose isomerase activity0.00E+00
18GO:0016701: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen0.00E+00
19GO:0050897: cobalt ion binding5.77E-05
20GO:0005524: ATP binding1.14E-04
21GO:0016301: kinase activity2.04E-04
22GO:0052595: aliphatic-amine oxidase activity2.25E-04
23GO:0004112: cyclic-nucleotide phosphodiesterase activity2.25E-04
24GO:0015294: solute:cation symporter activity2.25E-04
25GO:0003867: 4-aminobutyrate transaminase activity2.25E-04
26GO:0015207: adenine transmembrane transporter activity2.25E-04
27GO:0030544: Hsp70 protein binding2.25E-04
28GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.25E-04
29GO:0017096: acetylserotonin O-methyltransferase activity2.25E-04
30GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity2.25E-04
31GO:0009679: hexose:proton symporter activity2.25E-04
32GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.25E-04
33GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity2.25E-04
34GO:0001530: lipopolysaccharide binding2.25E-04
35GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity2.25E-04
36GO:0050200: plasmalogen synthase activity2.25E-04
37GO:0015208: guanine transmembrane transporter activity2.25E-04
38GO:0004329: formate-tetrahydrofolate ligase activity5.00E-04
39GO:0019200: carbohydrate kinase activity5.00E-04
40GO:0042937: tripeptide transporter activity5.00E-04
41GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding5.00E-04
42GO:0004142: diacylglycerol cholinephosphotransferase activity5.00E-04
43GO:0047209: coniferyl-alcohol glucosyltransferase activity5.00E-04
44GO:0004352: glutamate dehydrogenase (NAD+) activity5.00E-04
45GO:0004353: glutamate dehydrogenase [NAD(P)+] activity5.00E-04
46GO:0004566: beta-glucuronidase activity5.00E-04
47GO:0003994: aconitate hydratase activity5.00E-04
48GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity5.00E-04
49GO:0004477: methenyltetrahydrofolate cyclohydrolase activity5.00E-04
50GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity5.00E-04
51GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity8.13E-04
52GO:0003955: NAD(P)H dehydrogenase (quinone) activity8.13E-04
53GO:0004383: guanylate cyclase activity8.13E-04
54GO:0016595: glutamate binding8.13E-04
55GO:0004674: protein serine/threonine kinase activity1.07E-03
56GO:0005507: copper ion binding1.12E-03
57GO:0015086: cadmium ion transmembrane transporter activity1.16E-03
58GO:0004108: citrate (Si)-synthase activity1.16E-03
59GO:0030527: structural constituent of chromatin1.16E-03
60GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.16E-03
61GO:0000339: RNA cap binding1.16E-03
62GO:0004300: enoyl-CoA hydratase activity1.16E-03
63GO:0001653: peptide receptor activity1.16E-03
64GO:0048027: mRNA 5'-UTR binding1.16E-03
65GO:0004834: tryptophan synthase activity1.54E-03
66GO:0004737: pyruvate decarboxylase activity1.54E-03
67GO:0042936: dipeptide transporter activity1.54E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.54E-03
69GO:0003995: acyl-CoA dehydrogenase activity1.54E-03
70GO:0015210: uracil transmembrane transporter activity1.54E-03
71GO:0003997: acyl-CoA oxidase activity1.97E-03
72GO:0008198: ferrous iron binding1.97E-03
73GO:0005471: ATP:ADP antiporter activity1.97E-03
74GO:0004356: glutamate-ammonia ligase activity1.97E-03
75GO:0005459: UDP-galactose transmembrane transporter activity1.97E-03
76GO:0015145: monosaccharide transmembrane transporter activity1.97E-03
77GO:0036402: proteasome-activating ATPase activity2.43E-03
78GO:0030976: thiamine pyrophosphate binding2.43E-03
79GO:0070300: phosphatidic acid binding2.91E-03
80GO:0004747: ribokinase activity2.91E-03
81GO:0004124: cysteine synthase activity2.91E-03
82GO:0051753: mannan synthase activity2.91E-03
83GO:0004620: phospholipase activity3.43E-03
84GO:0016831: carboxy-lyase activity3.43E-03
85GO:0004525: ribonuclease III activity3.98E-03
86GO:0008865: fructokinase activity3.98E-03
87GO:0008142: oxysterol binding4.56E-03
88GO:0004672: protein kinase activity4.80E-03
89GO:0000989: transcription factor activity, transcription factor binding5.16E-03
90GO:0071949: FAD binding5.16E-03
91GO:0047617: acyl-CoA hydrolase activity5.79E-03
92GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.79E-03
93GO:0009672: auxin:proton symporter activity5.79E-03
94GO:0042626: ATPase activity, coupled to transmembrane movement of substances5.89E-03
95GO:0004713: protein tyrosine kinase activity6.45E-03
96GO:0008171: O-methyltransferase activity6.45E-03
97GO:0047372: acylglycerol lipase activity7.13E-03
98GO:0000976: transcription regulatory region sequence-specific DNA binding7.84E-03
99GO:0008081: phosphoric diester hydrolase activity8.57E-03
100GO:0008131: primary amine oxidase activity9.33E-03
101GO:0004175: endopeptidase activity9.33E-03
102GO:0004497: monooxygenase activity9.96E-03
103GO:0030552: cAMP binding1.01E-02
104GO:0030553: cGMP binding1.01E-02
105GO:0017025: TBP-class protein binding1.01E-02
106GO:0031625: ubiquitin protein ligase binding1.05E-02
107GO:0045735: nutrient reservoir activity1.12E-02
108GO:0043424: protein histidine kinase binding1.26E-02
109GO:0005216: ion channel activity1.26E-02
110GO:0004707: MAP kinase activity1.34E-02
111GO:0030246: carbohydrate binding1.40E-02
112GO:0016760: cellulose synthase (UDP-forming) activity1.53E-02
113GO:0003756: protein disulfide isomerase activity1.62E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.75E-02
115GO:0005249: voltage-gated potassium channel activity1.81E-02
116GO:0030551: cyclic nucleotide binding1.81E-02
117GO:0030170: pyridoxal phosphate binding1.89E-02
118GO:0010181: FMN binding2.01E-02
119GO:0005355: glucose transmembrane transporter activity2.01E-02
120GO:0015144: carbohydrate transmembrane transporter activity2.04E-02
121GO:0048038: quinone binding2.22E-02
122GO:0005351: sugar:proton symporter activity2.30E-02
123GO:0004197: cysteine-type endopeptidase activity2.32E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.43E-02
125GO:0005506: iron ion binding2.52E-02
126GO:0016759: cellulose synthase activity2.54E-02
127GO:0005200: structural constituent of cytoskeleton2.65E-02
128GO:0008237: metallopeptidase activity2.65E-02
129GO:0051213: dioxygenase activity2.88E-02
130GO:0005215: transporter activity2.99E-02
131GO:0030247: polysaccharide binding3.24E-02
132GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.36E-02
133GO:0046982: protein heterodimerization activity3.56E-02
134GO:0016788: hydrolase activity, acting on ester bonds3.70E-02
135GO:0005515: protein binding3.71E-02
136GO:0004222: metalloendopeptidase activity3.73E-02
137GO:0003682: chromatin binding3.84E-02
138GO:0003993: acid phosphatase activity4.25E-02
139GO:0051539: 4 iron, 4 sulfur cluster binding4.52E-02
140GO:0020037: heme binding4.99E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane3.59E-09
2GO:0005886: plasma membrane6.78E-09
3GO:0030173: integral component of Golgi membrane1.17E-04
4GO:0005777: peroxisome1.65E-04
5GO:0035339: SPOTS complex2.25E-04
6GO:0010008: endosome membrane2.59E-04
7GO:0005774: vacuolar membrane3.99E-04
8GO:0005849: mRNA cleavage factor complex1.16E-03
9GO:0000323: lytic vacuole1.16E-03
10GO:0005773: vacuole1.32E-03
11GO:0033179: proton-transporting V-type ATPase, V0 domain1.54E-03
12GO:0031597: cytosolic proteasome complex2.91E-03
13GO:0009506: plasmodesma3.02E-03
14GO:0031595: nuclear proteasome complex3.43E-03
15GO:0016020: membrane4.20E-03
16GO:0009514: glyoxysome4.56E-03
17GO:0005779: integral component of peroxisomal membrane4.56E-03
18GO:0008540: proteasome regulatory particle, base subcomplex5.79E-03
19GO:0005783: endoplasmic reticulum7.09E-03
20GO:0005765: lysosomal membrane7.13E-03
21GO:0005794: Golgi apparatus7.56E-03
22GO:0030176: integral component of endoplasmic reticulum membrane1.01E-02
23GO:0005789: endoplasmic reticulum membrane1.62E-02
24GO:0000785: chromatin2.32E-02
25GO:0009705: plant-type vacuole membrane2.35E-02
26GO:0005778: peroxisomal membrane2.65E-02
27GO:0000932: P-body2.88E-02
28GO:0009707: chloroplast outer membrane3.48E-02
29GO:0005829: cytosol3.84E-02
30GO:0000325: plant-type vacuole3.86E-02
31GO:0000786: nucleosome3.99E-02
Gene type



Gene DE type