co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
2	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
3	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
4	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0009819: drought recovery	4.50E-05
7	GO:0046686: response to cadmium ion	6.67E-05
8	GO:0006144: purine nucleobase metabolic process	8.61E-05
9	GO:0019628: urate catabolic process	8.61E-05
10	GO:0010036: response to boron-containing substance	8.61E-05
11	GO:0019441: tryptophan catabolic process to kynurenine	2.04E-04
12	GO:0097054: L-glutamate biosynthetic process	2.04E-04
13	GO:0015824: proline transport	2.04E-04
14	GO:0080029: cellular response to boron-containing substance levels	2.04E-04
15	GO:0051258: protein polymerization	2.04E-04
16	GO:0060919: auxin influx	2.04E-04
17	GO:0061158: 3'-UTR-mediated mRNA destabilization	3.42E-04
18	GO:0080055: low-affinity nitrate transport	3.42E-04
19	GO:0071494: cellular response to UV-C	3.42E-04
20	GO:0010447: response to acidic pH	3.42E-04
21	GO:0048281: inflorescence morphogenesis	3.42E-04
22	GO:0006537: glutamate biosynthetic process	4.92E-04
23	GO:0001676: long-chain fatty acid metabolic process	4.92E-04
24	GO:0046713: borate transport	4.92E-04
25	GO:0006516: glycoprotein catabolic process	4.92E-04
26	GO:0015700: arsenite transport	4.92E-04
27	GO:0019676: ammonia assimilation cycle	6.55E-04
28	GO:0010483: pollen tube reception	6.55E-04
29	GO:0018344: protein geranylgeranylation	8.29E-04
30	GO:0009816: defense response to bacterium, incompatible interaction	9.62E-04
31	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.01E-03
32	GO:0070814: hydrogen sulfide biosynthetic process	1.01E-03
33	GO:0010315: auxin efflux	1.01E-03
34	GO:0009228: thiamine biosynthetic process	1.01E-03
35	GO:0010044: response to aluminum ion	1.41E-03
36	GO:0006631: fatty acid metabolic process	1.75E-03
37	GO:0009699: phenylpropanoid biosynthetic process	1.86E-03
38	GO:0046685: response to arsenic-containing substance	2.10E-03
39	GO:0007064: mitotic sister chromatid cohesion	2.61E-03
40	GO:0000103: sulfate assimilation	2.61E-03
41	GO:0043069: negative regulation of programmed cell death	2.61E-03
42	GO:0006468: protein phosphorylation	2.86E-03
43	GO:0015706: nitrate transport	3.15E-03
44	GO:0010540: basipetal auxin transport	3.73E-03
45	GO:0002237: response to molecule of bacterial origin	3.73E-03
46	GO:0070588: calcium ion transmembrane transport	4.03E-03
47	GO:0010053: root epidermal cell differentiation	4.03E-03
48	GO:0007031: peroxisome organization	4.03E-03
49	GO:2000377: regulation of reactive oxygen species metabolic process	4.65E-03
50	GO:0009695: jasmonic acid biosynthetic process	4.98E-03
51	GO:0031408: oxylipin biosynthetic process	5.32E-03
52	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
53	GO:0016036: cellular response to phosphate starvation	5.76E-03
54	GO:0010227: floral organ abscission	6.01E-03
55	GO:0009617: response to bacterium	7.37E-03
56	GO:0048544: recognition of pollen	7.87E-03
57	GO:0008654: phospholipid biosynthetic process	8.26E-03
58	GO:0000302: response to reactive oxygen species	8.66E-03
59	GO:0010193: response to ozone	8.66E-03
60	GO:0031047: gene silencing by RNA	9.07E-03
61	GO:0009630: gravitropism	9.07E-03
62	GO:0007264: small GTPase mediated signal transduction	9.07E-03
63	GO:0055114: oxidation-reduction process	9.36E-03
64	GO:0006914: autophagy	9.91E-03
65	GO:0051607: defense response to virus	1.08E-02
66	GO:0010029: regulation of seed germination	1.17E-02
67	GO:0080167: response to karrikin	1.19E-02
68	GO:0006974: cellular response to DNA damage stimulus	1.21E-02
69	GO:0042128: nitrate assimilation	1.21E-02
70	GO:0010200: response to chitin	1.23E-02
71	GO:0048767: root hair elongation	1.40E-02
72	GO:0045454: cell redox homeostasis	1.42E-02
73	GO:0045892: negative regulation of transcription, DNA-templated	1.45E-02
74	GO:0009407: toxin catabolic process	1.45E-02
75	GO:0010043: response to zinc ion	1.50E-02
76	GO:0006865: amino acid transport	1.55E-02
77	GO:0006839: mitochondrial transport	1.76E-02
78	GO:0009926: auxin polar transport	1.92E-02
79	GO:0051707: response to other organism	1.92E-02
80	GO:0031347: regulation of defense response	2.19E-02
81	GO:0006486: protein glycosylation	2.37E-02
82	GO:0006857: oligopeptide transport	2.49E-02
83	GO:0006096: glycolytic process	2.67E-02
84	GO:0048367: shoot system development	2.73E-02
85	GO:0009626: plant-type hypersensitive response	2.79E-02
86	GO:0009735: response to cytokinin	2.85E-02
87	GO:0016569: covalent chromatin modification	2.92E-02
88	GO:0045893: positive regulation of transcription, DNA-templated	3.58E-02
89	GO:0009845: seed germination	3.78E-02
90	GO:0006633: fatty acid biosynthetic process	4.20E-02
91	GO:0010150: leaf senescence	4.49E-02
92	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.86E-02
93	GO:0006470: protein dephosphorylation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0004168: dolichol kinase activity	0.00E+00
3	GO:0080138: borate uptake transmembrane transporter activity	0.00E+00
4	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
5	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
6	GO:0004846: urate oxidase activity	0.00E+00
7	GO:0051920: peroxiredoxin activity	2.53E-05
8	GO:0102391: decanoate--CoA ligase activity	2.53E-05
9	GO:0004467: long-chain fatty acid-CoA ligase activity	3.42E-05
10	GO:0016209: antioxidant activity	4.50E-05
11	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	8.61E-05
12	GO:0004321: fatty-acyl-CoA synthase activity	8.61E-05
13	GO:0016041: glutamate synthase (ferredoxin) activity	8.61E-05
14	GO:0008798: beta-aspartyl-peptidase activity	2.04E-04
15	GO:0019172: glyoxalase III activity	2.04E-04
16	GO:0004061: arylformamidase activity	2.04E-04
17	GO:0004067: asparaginase activity	2.04E-04
18	GO:0015105: arsenite transmembrane transporter activity	2.04E-04
19	GO:0015193: L-proline transmembrane transporter activity	3.42E-04
20	GO:0004781: sulfate adenylyltransferase (ATP) activity	3.42E-04
21	GO:0080054: low-affinity nitrate transmembrane transporter activity	3.42E-04
22	GO:0005093: Rab GDP-dissociation inhibitor activity	3.42E-04
23	GO:0046715: borate transmembrane transporter activity	4.92E-04
24	GO:0010328: auxin influx transmembrane transporter activity	6.55E-04
25	GO:0051538: 3 iron, 4 sulfur cluster binding	8.29E-04
26	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	8.29E-04
27	GO:0017137: Rab GTPase binding	8.29E-04
28	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.01E-03
29	GO:0036402: proteasome-activating ATPase activity	1.01E-03
30	GO:0030976: thiamine pyrophosphate binding	1.01E-03
31	GO:0004605: phosphatidate cytidylyltransferase activity	1.01E-03
32	GO:0004674: protein serine/threonine kinase activity	1.07E-03
33	GO:0005524: ATP binding	1.07E-03
34	GO:0004602: glutathione peroxidase activity	1.20E-03
35	GO:0043295: glutathione binding	1.41E-03
36	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.41E-03
37	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.41E-03
38	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.63E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	1.63E-03
40	GO:0004630: phospholipase D activity	1.86E-03
41	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.86E-03
42	GO:0016207: 4-coumarate-CoA ligase activity	2.10E-03
43	GO:0030955: potassium ion binding	2.35E-03
44	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.35E-03
45	GO:0004743: pyruvate kinase activity	2.35E-03
46	GO:0004713: protein tyrosine kinase activity	2.61E-03
47	GO:0008559: xenobiotic-transporting ATPase activity	2.87E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	3.43E-03
49	GO:0005388: calcium-transporting ATPase activity	3.43E-03
50	GO:0010329: auxin efflux transmembrane transporter activity	3.43E-03
51	GO:0017025: TBP-class protein binding	4.03E-03
52	GO:0043130: ubiquitin binding	4.65E-03
53	GO:0035251: UDP-glucosyltransferase activity	5.32E-03
54	GO:0003727: single-stranded RNA binding	6.36E-03
55	GO:0008080: N-acetyltransferase activity	7.48E-03
56	GO:0050662: coenzyme binding	7.87E-03
57	GO:0004601: peroxidase activity	9.57E-03
58	GO:0051213: dioxygenase activity	1.12E-02
59	GO:0015250: water channel activity	1.12E-02
60	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.31E-02
61	GO:0005096: GTPase activator activity	1.40E-02
62	GO:0050897: cobalt ion binding	1.50E-02
63	GO:0016301: kinase activity	1.51E-02
64	GO:0004722: protein serine/threonine phosphatase activity	1.56E-02
65	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.60E-02
66	GO:0003993: acid phosphatase activity	1.65E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.70E-02
68	GO:0004364: glutathione transferase activity	1.86E-02
69	GO:0015293: symporter activity	2.08E-02
70	GO:0004672: protein kinase activity	2.47E-02
71	GO:0008234: cysteine-type peptidase activity	2.55E-02
72	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
73	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.85E-02
74	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.85E-02
75	GO:0016874: ligase activity	2.92E-02
76	GO:0016746: transferase activity, transferring acyl groups	3.11E-02
77	GO:0004386: helicase activity	3.24E-02
78	GO:0046872: metal ion binding	3.32E-02
79	GO:0016758: transferase activity, transferring hexosyl groups	3.50E-02
80	GO:0043565: sequence-specific DNA binding	3.95E-02
81	GO:0008194: UDP-glycosyltransferase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.84E-05
2	GO:0005829: cytosol	9.84E-05
3	GO:0016328: lateral plasma membrane	3.42E-04
4	GO:0005968: Rab-protein geranylgeranyltransferase complex	4.92E-04
5	GO:0031597: cytosolic proteasome complex	1.20E-03
6	GO:0031595: nuclear proteasome complex	1.41E-03
7	GO:0008540: proteasome regulatory particle, base subcomplex	2.35E-03
8	GO:0030176: integral component of endoplasmic reticulum membrane	4.03E-03
9	GO:0005773: vacuole	4.24E-03
10	GO:0005777: peroxisome	7.41E-03
11	GO:0005737: cytoplasm	8.18E-03
12	GO:0009506: plasmodesma	9.12E-03
13	GO:0043231: intracellular membrane-bounded organelle	1.94E-02
14	GO:0000502: proteasome complex	2.37E-02
15	GO:0005887: integral component of plasma membrane	2.39E-02
16	GO:0016020: membrane	3.56E-02