co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
3	GO:0070584: mitochondrion morphogenesis	0.00E+00
4	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
5	GO:0046677: response to antibiotic	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	3.61E-16
7	GO:0015979: photosynthesis	5.18E-13
8	GO:0018298: protein-chromophore linkage	1.82E-11
9	GO:0015995: chlorophyll biosynthetic process	1.62E-09
10	GO:0009645: response to low light intensity stimulus	2.76E-08
11	GO:0009769: photosynthesis, light harvesting in photosystem II	2.76E-08
12	GO:0010218: response to far red light	2.58E-07
13	GO:0010114: response to red light	6.31E-07
14	GO:0009644: response to high light intensity	7.53E-07
15	GO:0055114: oxidation-reduction process	2.93E-06
16	GO:0009637: response to blue light	1.97E-05
17	GO:0015812: gamma-aminobutyric acid transport	3.50E-05
18	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.78E-05
19	GO:0051170: nuclear import	8.78E-05
20	GO:0009269: response to desiccation	9.30E-05
21	GO:0006598: polyamine catabolic process	1.52E-04
22	GO:0009416: response to light stimulus	1.87E-04
23	GO:0044211: CTP salvage	2.25E-04
24	GO:1901657: glycosyl compound metabolic process	2.30E-04
25	GO:0030104: water homeostasis	3.05E-04
26	GO:0009765: photosynthesis, light harvesting	3.05E-04
27	GO:2000306: positive regulation of photomorphogenesis	3.05E-04
28	GO:0010600: regulation of auxin biosynthetic process	3.05E-04
29	GO:0044206: UMP salvage	3.05E-04
30	GO:0043097: pyrimidine nucleoside salvage	3.89E-04
31	GO:0009635: response to herbicide	4.78E-04
32	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.78E-04
33	GO:0045962: positive regulation of development, heterochronic	4.78E-04
34	GO:0006206: pyrimidine nucleobase metabolic process	4.78E-04
35	GO:0010189: vitamin E biosynthetic process	5.70E-04
36	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.70E-04
37	GO:0010161: red light signaling pathway	6.66E-04
38	GO:0010196: nonphotochemical quenching	6.66E-04
39	GO:0009704: de-etiolation	7.68E-04
40	GO:0010928: regulation of auxin mediated signaling pathway	7.68E-04
41	GO:0010099: regulation of photomorphogenesis	8.71E-04
42	GO:0007186: G-protein coupled receptor signaling pathway	8.71E-04
43	GO:0009409: response to cold	9.07E-04
44	GO:0090333: regulation of stomatal closure	9.78E-04
45	GO:0042761: very long-chain fatty acid biosynthetic process	1.09E-03
46	GO:0009641: shade avoidance	1.20E-03
47	GO:0030148: sphingolipid biosynthetic process	1.32E-03
48	GO:0018107: peptidyl-threonine phosphorylation	1.57E-03
49	GO:0009718: anthocyanin-containing compound biosynthetic process	1.57E-03
50	GO:0009767: photosynthetic electron transport chain	1.57E-03
51	GO:0007623: circadian rhythm	1.95E-03
52	GO:0006636: unsaturated fatty acid biosynthetic process	1.97E-03
53	GO:0006874: cellular calcium ion homeostasis	2.26E-03
54	GO:0003333: amino acid transmembrane transport	2.41E-03
55	GO:0048511: rhythmic process	2.41E-03
56	GO:0010017: red or far-red light signaling pathway	2.56E-03
57	GO:0071215: cellular response to abscisic acid stimulus	2.71E-03
58	GO:0009658: chloroplast organization	2.99E-03
59	GO:0070417: cellular response to cold	3.03E-03
60	GO:0009723: response to ethylene	3.45E-03
61	GO:0006814: sodium ion transport	3.53E-03
62	GO:0080167: response to karrikin	3.70E-03
63	GO:0016126: sterol biosynthetic process	4.99E-03
64	GO:0006629: lipid metabolic process	5.43E-03
65	GO:0005975: carbohydrate metabolic process	5.79E-03
66	GO:0000160: phosphorelay signal transduction system	6.19E-03
67	GO:0006811: ion transport	6.40E-03
68	GO:0010119: regulation of stomatal movement	6.61E-03
69	GO:0006865: amino acid transport	6.83E-03
70	GO:0051707: response to other organism	8.41E-03
71	GO:0009640: photomorphogenesis	8.41E-03
72	GO:0009965: leaf morphogenesis	9.12E-03
73	GO:0006812: cation transport	9.86E-03
74	GO:0042538: hyperosmotic salinity response	9.86E-03
75	GO:0009585: red, far-red light phototransduction	1.04E-02
76	GO:0043086: negative regulation of catalytic activity	1.17E-02
77	GO:0009624: response to nematode	1.33E-02
78	GO:0018105: peptidyl-serine phosphorylation	1.36E-02
79	GO:0009058: biosynthetic process	1.62E-02
80	GO:0009845: seed germination	1.65E-02
81	GO:0048366: leaf development	3.00E-02
82	GO:0046686: response to cadmium ion	3.05E-02
83	GO:0044550: secondary metabolite biosynthetic process	3.31E-02
84	GO:0045454: cell redox homeostasis	3.54E-02
85	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
86	GO:0006351: transcription, DNA-templated	3.83E-02
87	GO:0009737: response to abscisic acid	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0080082: esculin beta-glucosidase activity	0.00E+00
3	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0031409: pigment binding	5.84E-14
12	GO:0016168: chlorophyll binding	8.93E-12
13	GO:0052631: sphingolipid delta-8 desaturase activity	3.50E-05
14	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	3.50E-05
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	3.50E-05
16	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	3.50E-05
17	GO:0080079: cellobiose glucosidase activity	3.50E-05
18	GO:0046872: metal ion binding	3.93E-05
19	GO:0016630: protochlorophyllide reductase activity	8.78E-05
20	GO:0015180: L-alanine transmembrane transporter activity	8.78E-05
21	GO:0046592: polyamine oxidase activity	1.52E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.52E-04
23	GO:0015189: L-lysine transmembrane transporter activity	2.25E-04
24	GO:0015181: arginine transmembrane transporter activity	2.25E-04
25	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.25E-04
26	GO:0004845: uracil phosphoribosyltransferase activity	3.05E-04
27	GO:0005313: L-glutamate transmembrane transporter activity	3.05E-04
28	GO:0004506: squalene monooxygenase activity	3.05E-04
29	GO:0004930: G-protein coupled receptor activity	3.05E-04
30	GO:0102483: scopolin beta-glucosidase activity	3.47E-04
31	GO:0051538: 3 iron, 4 sulfur cluster binding	3.89E-04
32	GO:0008422: beta-glucosidase activity	5.28E-04
33	GO:0004849: uridine kinase activity	5.70E-04
34	GO:0051537: 2 iron, 2 sulfur cluster binding	6.67E-04
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.71E-04
36	GO:0015171: amino acid transmembrane transporter activity	9.06E-04
37	GO:0000989: transcription factor activity, transcription factor binding	9.78E-04
38	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.20E-03
39	GO:0047372: acylglycerol lipase activity	1.32E-03
40	GO:0004022: alcohol dehydrogenase (NAD) activity	1.57E-03
41	GO:0005315: inorganic phosphate transmembrane transporter activity	1.57E-03
42	GO:0008131: primary amine oxidase activity	1.70E-03
43	GO:0004970: ionotropic glutamate receptor activity	1.84E-03
44	GO:0004190: aspartic-type endopeptidase activity	1.84E-03
45	GO:0005217: intracellular ligand-gated ion channel activity	1.84E-03
46	GO:0015297: antiporter activity	1.86E-03
47	GO:0005216: ion channel activity	2.26E-03
48	GO:0008514: organic anion transmembrane transporter activity	2.87E-03
49	GO:0048038: quinone binding	3.88E-03
50	GO:0000156: phosphorelay response regulator activity	4.24E-03
51	GO:0016491: oxidoreductase activity	4.84E-03
52	GO:0003993: acid phosphatase activity	7.27E-03
53	GO:0015293: symporter activity	9.12E-03
54	GO:0005198: structural molecule activity	9.12E-03
55	GO:0005515: protein binding	1.08E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.27E-02
57	GO:0015035: protein disulfide oxidoreductase activity	1.36E-02
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.59E-02
59	GO:0015144: carbohydrate transmembrane transporter activity	1.77E-02
60	GO:0046910: pectinesterase inhibitor activity	1.86E-02
61	GO:0005506: iron ion binding	1.93E-02
62	GO:0005351: sugar:proton symporter activity	1.93E-02
63	GO:0050660: flavin adenine dinucleotide binding	2.96E-02
64	GO:0008233: peptidase activity	3.08E-02
65	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.74E-02
66	GO:0016787: hydrolase activity	4.19E-02
67	GO:0009055: electron carrier activity	4.32E-02
68	GO:0003677: DNA binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	1.80E-15
2	GO:0009522: photosystem I	5.71E-15
3	GO:0009534: chloroplast thylakoid	1.44E-12
4	GO:0009941: chloroplast envelope	5.85E-12
5	GO:0009579: thylakoid	5.32E-11
6	GO:0010287: plastoglobule	1.39E-09
7	GO:0030076: light-harvesting complex	3.22E-09
8	GO:0009523: photosystem II	3.99E-08
9	GO:0009507: chloroplast	1.13E-06
10	GO:0009517: PSII associated light-harvesting complex II	1.51E-06
11	GO:0009783: photosystem II antenna complex	3.50E-05
12	GO:0016021: integral component of membrane	5.49E-05
13	GO:0042651: thylakoid membrane	8.34E-05
14	GO:0030660: Golgi-associated vesicle membrane	3.05E-04
15	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.05E-04
16	GO:0016020: membrane	5.51E-04
17	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	7.68E-04
18	GO:0009538: photosystem I reaction center	7.68E-04
19	GO:0031966: mitochondrial membrane	7.69E-04
20	GO:0009706: chloroplast inner membrane	1.15E-03
21	GO:0005765: lysosomal membrane	1.32E-03
22	GO:0009707: chloroplast outer membrane	5.99E-03
23	GO:0005777: peroxisome	1.11E-02
24	GO:0016607: nuclear speck	1.19E-02
25	GO:0010008: endosome membrane	1.19E-02
26	GO:0031225: anchored component of membrane	1.51E-02
27	GO:0005623: cell	1.59E-02
28	GO:0046658: anchored component of plasma membrane	2.39E-02
29	GO:0005789: endoplasmic reticulum membrane	2.99E-02
30	GO:0031969: chloroplast membrane	3.11E-02
31	GO:0005783: endoplasmic reticulum	3.97E-02