co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G24793

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0071578: zinc II ion transmembrane import	0.00E+00
5	GO:0019484: beta-alanine catabolic process	0.00E+00
6	GO:0033955: mitochondrial DNA inheritance	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0051788: response to misfolded protein	3.72E-07
10	GO:0043248: proteasome assembly	1.65E-05
11	GO:0048367: shoot system development	2.05E-05
12	GO:0035344: hypoxanthine transport	8.25E-05
13	GO:0046520: sphingoid biosynthetic process	8.25E-05
14	GO:0009865: pollen tube adhesion	8.25E-05
15	GO:0006540: glutamate decarboxylation to succinate	8.25E-05
16	GO:0010265: SCF complex assembly	8.25E-05
17	GO:0098721: uracil import across plasma membrane	8.25E-05
18	GO:0098702: adenine import across plasma membrane	8.25E-05
19	GO:0048455: stamen formation	8.25E-05
20	GO:0035266: meristem growth	8.25E-05
21	GO:0098710: guanine import across plasma membrane	8.25E-05
22	GO:0009450: gamma-aminobutyric acid catabolic process	8.25E-05
23	GO:0007292: female gamete generation	8.25E-05
24	GO:0052544: defense response by callose deposition in cell wall	1.14E-04
25	GO:0009727: detection of ethylene stimulus	1.97E-04
26	GO:0052542: defense response by callose deposition	1.97E-04
27	GO:0010033: response to organic substance	1.97E-04
28	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	3.29E-04
29	GO:0060968: regulation of gene silencing	3.29E-04
30	GO:1900055: regulation of leaf senescence	3.29E-04
31	GO:1900140: regulation of seedling development	3.29E-04
32	GO:0071786: endoplasmic reticulum tubular network organization	4.75E-04
33	GO:0070676: intralumenal vesicle formation	4.75E-04
34	GO:0006882: cellular zinc ion homeostasis	4.75E-04
35	GO:0048194: Golgi vesicle budding	4.75E-04
36	GO:0006020: inositol metabolic process	4.75E-04
37	GO:0070301: cellular response to hydrogen peroxide	4.75E-04
38	GO:0048364: root development	4.88E-04
39	GO:0042752: regulation of circadian rhythm	5.32E-04
40	GO:0006891: intra-Golgi vesicle-mediated transport	6.09E-04
41	GO:0048830: adventitious root development	6.32E-04
42	GO:0006536: glutamate metabolic process	6.32E-04
43	GO:0061088: regulation of sequestering of zinc ion	6.32E-04
44	GO:0006878: cellular copper ion homeostasis	6.32E-04
45	GO:0048232: male gamete generation	9.77E-04
46	GO:0010358: leaf shaping	9.77E-04
47	GO:0010337: regulation of salicylic acid metabolic process	9.77E-04
48	GO:0050665: hydrogen peroxide biosynthetic process	9.77E-04
49	GO:0009759: indole glucosinolate biosynthetic process	9.77E-04
50	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.77E-04
51	GO:0048827: phyllome development	9.77E-04
52	GO:0048280: vesicle fusion with Golgi apparatus	1.16E-03
53	GO:0010119: regulation of stomatal movement	1.28E-03
54	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.36E-03
55	GO:0006333: chromatin assembly or disassembly	1.36E-03
56	GO:0006955: immune response	1.36E-03
57	GO:0046470: phosphatidylcholine metabolic process	1.36E-03
58	GO:0009395: phospholipid catabolic process	1.36E-03
59	GO:0048528: post-embryonic root development	1.36E-03
60	GO:0009690: cytokinin metabolic process	1.57E-03
61	GO:0006605: protein targeting	1.57E-03
62	GO:0010078: maintenance of root meristem identity	1.57E-03
63	GO:0048366: leaf development	1.61E-03
64	GO:0006972: hyperosmotic response	1.79E-03
65	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.26E-03
66	GO:0006896: Golgi to vacuole transport	2.51E-03
67	GO:0048829: root cap development	2.51E-03
68	GO:0009641: shade avoidance	2.51E-03
69	GO:0009682: induced systemic resistance	2.77E-03
70	GO:0009684: indoleacetic acid biosynthetic process	2.77E-03
71	GO:0010015: root morphogenesis	2.77E-03
72	GO:0009408: response to heat	2.80E-03
73	GO:0009626: plant-type hypersensitive response	3.02E-03
74	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.03E-03
75	GO:0042742: defense response to bacterium	3.15E-03
76	GO:0018105: peptidyl-serine phosphorylation	3.50E-03
77	GO:0006541: glutamine metabolic process	3.59E-03
78	GO:0002237: response to molecule of bacterial origin	3.59E-03
79	GO:0009933: meristem structural organization	3.59E-03
80	GO:0009873: ethylene-activated signaling pathway	3.87E-03
81	GO:0005985: sucrose metabolic process	3.88E-03
82	GO:0090351: seedling development	3.88E-03
83	GO:0000398: mRNA splicing, via spliceosome	3.92E-03
84	GO:0000162: tryptophan biosynthetic process	4.18E-03
85	GO:2000377: regulation of reactive oxygen species metabolic process	4.48E-03
86	GO:0030433: ubiquitin-dependent ERAD pathway	5.45E-03
87	GO:0009651: response to salt stress	5.61E-03
88	GO:0001944: vasculature development	5.78E-03
89	GO:0009625: response to insect	5.78E-03
90	GO:0010150: leaf senescence	5.85E-03
91	GO:0046686: response to cadmium ion	6.18E-03
92	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.48E-03
93	GO:0042147: retrograde transport, endosome to Golgi	6.48E-03
94	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.54E-03
95	GO:0010501: RNA secondary structure unwinding	6.83E-03
96	GO:0010087: phloem or xylem histogenesis	6.83E-03
97	GO:0045489: pectin biosynthetic process	7.20E-03
98	GO:0010154: fruit development	7.20E-03
99	GO:0010182: sugar mediated signaling pathway	7.20E-03
100	GO:0048544: recognition of pollen	7.57E-03
101	GO:0006623: protein targeting to vacuole	7.95E-03
102	GO:0010183: pollen tube guidance	7.95E-03
103	GO:0055072: iron ion homeostasis	7.95E-03
104	GO:0006635: fatty acid beta-oxidation	8.33E-03
105	GO:0009630: gravitropism	8.73E-03
106	GO:0030163: protein catabolic process	9.12E-03
107	GO:0071281: cellular response to iron ion	9.12E-03
108	GO:0006914: autophagy	9.53E-03
109	GO:0009737: response to abscisic acid	9.92E-03
110	GO:0006904: vesicle docking involved in exocytosis	9.94E-03
111	GO:0001666: response to hypoxia	1.08E-02
112	GO:0010029: regulation of seed germination	1.12E-02
113	GO:0006974: cellular response to DNA damage stimulus	1.17E-02
114	GO:0046777: protein autophosphorylation	1.20E-02
115	GO:0006888: ER to Golgi vesicle-mediated transport	1.21E-02
116	GO:0016049: cell growth	1.26E-02
117	GO:0048481: plant ovule development	1.30E-02
118	GO:0008219: cell death	1.30E-02
119	GO:0010311: lateral root formation	1.35E-02
120	GO:0048767: root hair elongation	1.35E-02
121	GO:0006886: intracellular protein transport	1.39E-02
122	GO:0006499: N-terminal protein myristoylation	1.39E-02
123	GO:0006811: ion transport	1.39E-02
124	GO:0010043: response to zinc ion	1.44E-02
125	GO:0006865: amino acid transport	1.49E-02
126	GO:0009867: jasmonic acid mediated signaling pathway	1.54E-02
127	GO:0045087: innate immune response	1.54E-02
128	GO:0016051: carbohydrate biosynthetic process	1.54E-02
129	GO:0006099: tricarboxylic acid cycle	1.59E-02
130	GO:0009733: response to auxin	1.64E-02
131	GO:0006631: fatty acid metabolic process	1.74E-02
132	GO:0006887: exocytosis	1.74E-02
133	GO:0009640: photomorphogenesis	1.84E-02
134	GO:0010114: response to red light	1.84E-02
135	GO:0009744: response to sucrose	1.84E-02
136	GO:0009965: leaf morphogenesis	2.00E-02
137	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.11E-02
138	GO:0006812: cation transport	2.16E-02
139	GO:0009846: pollen germination	2.16E-02
140	GO:0009809: lignin biosynthetic process	2.28E-02
141	GO:0006468: protein phosphorylation	2.36E-02
142	GO:0006096: glycolytic process	2.56E-02
143	GO:0009738: abscisic acid-activated signaling pathway	2.86E-02
144	GO:0009555: pollen development	2.95E-02
145	GO:0006396: RNA processing	2.99E-02
146	GO:0035556: intracellular signal transduction	3.12E-02
147	GO:0009845: seed germination	3.63E-02
148	GO:0009790: embryo development	3.83E-02
149	GO:0006511: ubiquitin-dependent protein catabolic process	4.00E-02
150	GO:0040008: regulation of growth	4.18E-02
151	GO:0009739: response to gibberellin	4.67E-02
152	GO:0006470: protein dephosphorylation	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0005548: phospholipid transporter activity	0.00E+00
2	GO:0015616: DNA translocase activity	0.00E+00
3	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
4	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
5	GO:1990446: U1 snRNP binding	0.00E+00
6	GO:0015208: guanine transmembrane transporter activity	8.25E-05
7	GO:0015294: solute:cation symporter activity	8.25E-05
8	GO:0003867: 4-aminobutyrate transaminase activity	8.25E-05
9	GO:0015207: adenine transmembrane transporter activity	8.25E-05
10	GO:0019707: protein-cysteine S-acyltransferase activity	8.25E-05
11	GO:0000170: sphingosine hydroxylase activity	8.25E-05
12	GO:0038199: ethylene receptor activity	1.97E-04
13	GO:0042284: sphingolipid delta-4 desaturase activity	1.97E-04
14	GO:0005047: signal recognition particle binding	3.29E-04
15	GO:0016805: dipeptidase activity	3.29E-04
16	GO:0001653: peptide receptor activity	4.75E-04
17	GO:0004108: citrate (Si)-synthase activity	4.75E-04
18	GO:0030527: structural constituent of chromatin	4.75E-04
19	GO:0051740: ethylene binding	4.75E-04
20	GO:0015210: uracil transmembrane transporter activity	6.32E-04
21	GO:0004737: pyruvate decarboxylase activity	6.32E-04
22	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	8.00E-04
23	GO:0016887: ATPase activity	8.88E-04
24	GO:0009931: calcium-dependent protein serine/threonine kinase activity	9.62E-04
25	GO:0015562: efflux transmembrane transporter activity	9.77E-04
26	GO:0031593: polyubiquitin binding	9.77E-04
27	GO:0035252: UDP-xylosyltransferase activity	9.77E-04
28	GO:0036402: proteasome-activating ATPase activity	9.77E-04
29	GO:0030976: thiamine pyrophosphate binding	9.77E-04
30	GO:0004683: calmodulin-dependent protein kinase activity	1.01E-03
31	GO:0004012: phospholipid-translocating ATPase activity	1.16E-03
32	GO:0003730: mRNA 3'-UTR binding	1.16E-03
33	GO:0000287: magnesium ion binding	1.28E-03
34	GO:0016831: carboxy-lyase activity	1.36E-03
35	GO:0008235: metalloexopeptidase activity	1.36E-03
36	GO:0004620: phospholipase activity	1.36E-03
37	GO:0052747: sinapyl alcohol dehydrogenase activity	1.57E-03
38	GO:0004525: ribonuclease III activity	1.57E-03
39	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.79E-03
40	GO:0008135: translation factor activity, RNA binding	1.79E-03
41	GO:0004630: phospholipase D activity	1.79E-03
42	GO:0004743: pyruvate kinase activity	2.26E-03
43	GO:0030955: potassium ion binding	2.26E-03
44	GO:0015020: glucuronosyltransferase activity	2.51E-03
45	GO:0004673: protein histidine kinase activity	2.51E-03
46	GO:0015171: amino acid transmembrane transporter activity	2.66E-03
47	GO:0004177: aminopeptidase activity	2.77E-03
48	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.03E-03
49	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.31E-03
50	GO:0004022: alcohol dehydrogenase (NAD) activity	3.31E-03
51	GO:0000155: phosphorelay sensor kinase activity	3.31E-03
52	GO:0017025: TBP-class protein binding	3.88E-03
53	GO:0043130: ubiquitin binding	4.48E-03
54	GO:0005385: zinc ion transmembrane transporter activity	4.48E-03
55	GO:0008324: cation transmembrane transporter activity	4.80E-03
56	GO:0004176: ATP-dependent peptidase activity	5.12E-03
57	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.12E-03
58	GO:0016779: nucleotidyltransferase activity	5.45E-03
59	GO:0004872: receptor activity	7.95E-03
60	GO:0000156: phosphorelay response regulator activity	9.12E-03
61	GO:0005516: calmodulin binding	9.74E-03
62	GO:0008237: metallopeptidase activity	9.94E-03
63	GO:0005524: ATP binding	1.01E-02
64	GO:0008375: acetylglucosaminyltransferase activity	1.17E-02
65	GO:0004004: ATP-dependent RNA helicase activity	1.21E-02
66	GO:0005096: GTPase activator activity	1.35E-02
67	GO:0004222: metalloendopeptidase activity	1.39E-02
68	GO:0005506: iron ion binding	1.39E-02
69	GO:0050897: cobalt ion binding	1.44E-02
70	GO:0030145: manganese ion binding	1.44E-02
71	GO:0003993: acid phosphatase activity	1.59E-02
72	GO:0000149: SNARE binding	1.64E-02
73	GO:0005484: SNAP receptor activity	1.84E-02
74	GO:0035091: phosphatidylinositol binding	1.95E-02
75	GO:0004672: protein kinase activity	2.31E-02
76	GO:0003729: mRNA binding	2.34E-02
77	GO:0031625: ubiquitin protein ligase binding	2.45E-02
78	GO:0008234: cysteine-type peptidase activity	2.45E-02
79	GO:0045735: nutrient reservoir activity	2.56E-02
80	GO:0022857: transmembrane transporter activity	2.80E-02
81	GO:0008026: ATP-dependent helicase activity	3.05E-02
82	GO:0008270: zinc ion binding	3.13E-02
83	GO:0004674: protein serine/threonine kinase activity	3.45E-02
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.50E-02
85	GO:0030170: pyridoxal phosphate binding	3.70E-02
86	GO:0015144: carbohydrate transmembrane transporter activity	3.90E-02
87	GO:0030246: carbohydrate binding	3.96E-02
88	GO:0005351: sugar:proton symporter activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0031981: nuclear lumen	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0005794: Golgi apparatus	2.59E-06
5	GO:0005783: endoplasmic reticulum	5.70E-06
6	GO:0005802: trans-Golgi network	7.00E-05
7	GO:0008540: proteasome regulatory particle, base subcomplex	8.11E-05
8	GO:0000138: Golgi trans cisterna	8.25E-05
9	GO:0016020: membrane	1.48E-04
10	GO:0016021: integral component of membrane	1.94E-04
11	GO:0005789: endoplasmic reticulum membrane	3.17E-04
12	GO:0000323: lytic vacuole	4.75E-04
13	GO:0071782: endoplasmic reticulum tubular network	4.75E-04
14	GO:0031461: cullin-RING ubiquitin ligase complex	4.75E-04
15	GO:0005829: cytosol	5.98E-04
16	GO:0005776: autophagosome	6.32E-04
17	GO:0000813: ESCRT I complex	8.00E-04
18	GO:0030140: trans-Golgi network transport vesicle	9.77E-04
19	GO:0005886: plasma membrane	1.03E-03
20	GO:0031597: cytosolic proteasome complex	1.16E-03
21	GO:0000794: condensed nuclear chromosome	1.36E-03
22	GO:0031595: nuclear proteasome complex	1.36E-03
23	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.57E-03
24	GO:0012507: ER to Golgi transport vesicle membrane	1.57E-03
25	GO:0005774: vacuolar membrane	1.63E-03
26	GO:0031902: late endosome membrane	1.66E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.79E-03
28	GO:0000502: proteasome complex	2.40E-03
29	GO:0017119: Golgi transport complex	2.51E-03
30	GO:0005768: endosome	2.69E-03
31	GO:0010008: endosome membrane	2.92E-03
32	GO:0005769: early endosome	4.18E-03
33	GO:0000139: Golgi membrane	4.99E-03
34	GO:0031410: cytoplasmic vesicle	5.45E-03
35	GO:0030136: clathrin-coated vesicle	6.48E-03
36	GO:0005770: late endosome	7.20E-03
37	GO:0000785: chromatin	8.73E-03
38	GO:0000145: exocyst	8.73E-03
39	GO:0005773: vacuole	1.24E-02
40	GO:0000151: ubiquitin ligase complex	1.30E-02
41	GO:0000325: plant-type vacuole	1.44E-02
42	GO:0000786: nucleosome	1.49E-02
43	GO:0005819: spindle	1.64E-02
44	GO:0031201: SNARE complex	1.74E-02
45	GO:0031966: mitochondrial membrane	2.16E-02
46	GO:0009524: phragmoplast	3.56E-02