GO Enrichment Analysis of Co-expressed Genes with
AT1G24610
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042493: response to drug | 0.00E+00 |
| 2 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 8 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 9 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 10 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 11 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 12 | GO:0006412: translation | 1.83E-18 |
| 13 | GO:0042254: ribosome biogenesis | 9.36E-11 |
| 14 | GO:0032544: plastid translation | 6.25E-10 |
| 15 | GO:0015995: chlorophyll biosynthetic process | 2.17E-09 |
| 16 | GO:0010027: thylakoid membrane organization | 1.67E-06 |
| 17 | GO:0009735: response to cytokinin | 3.22E-06 |
| 18 | GO:0009658: chloroplast organization | 6.53E-06 |
| 19 | GO:0090391: granum assembly | 1.13E-05 |
| 20 | GO:0006457: protein folding | 7.87E-05 |
| 21 | GO:0015979: photosynthesis | 1.47E-04 |
| 22 | GO:0010196: nonphotochemical quenching | 1.93E-04 |
| 23 | GO:0006353: DNA-templated transcription, termination | 2.45E-04 |
| 24 | GO:1904964: positive regulation of phytol biosynthetic process | 2.60E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.60E-04 |
| 26 | GO:0043489: RNA stabilization | 2.60E-04 |
| 27 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.60E-04 |
| 28 | GO:0006783: heme biosynthetic process | 3.65E-04 |
| 29 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.33E-04 |
| 30 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.06E-04 |
| 31 | GO:0006568: tryptophan metabolic process | 5.74E-04 |
| 32 | GO:0010024: phytochromobilin biosynthetic process | 5.74E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.74E-04 |
| 34 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.67E-04 |
| 35 | GO:0010207: photosystem II assembly | 8.52E-04 |
| 36 | GO:0015675: nickel cation transport | 9.31E-04 |
| 37 | GO:0006788: heme oxidation | 9.31E-04 |
| 38 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 9.31E-04 |
| 39 | GO:0009451: RNA modification | 1.10E-03 |
| 40 | GO:0006986: response to unfolded protein | 1.33E-03 |
| 41 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.33E-03 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 1.33E-03 |
| 43 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.33E-03 |
| 44 | GO:0010239: chloroplast mRNA processing | 1.33E-03 |
| 45 | GO:0006241: CTP biosynthetic process | 1.33E-03 |
| 46 | GO:0019048: modulation by virus of host morphology or physiology | 1.33E-03 |
| 47 | GO:0006165: nucleoside diphosphate phosphorylation | 1.33E-03 |
| 48 | GO:0006228: UTP biosynthetic process | 1.33E-03 |
| 49 | GO:0031048: chromatin silencing by small RNA | 1.33E-03 |
| 50 | GO:0009650: UV protection | 1.33E-03 |
| 51 | GO:0033014: tetrapyrrole biosynthetic process | 1.33E-03 |
| 52 | GO:0010088: phloem development | 1.33E-03 |
| 53 | GO:0006424: glutamyl-tRNA aminoacylation | 1.33E-03 |
| 54 | GO:0046739: transport of virus in multicellular host | 1.33E-03 |
| 55 | GO:0009411: response to UV | 1.68E-03 |
| 56 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.68E-03 |
| 57 | GO:0006183: GTP biosynthetic process | 1.78E-03 |
| 58 | GO:0051567: histone H3-K9 methylation | 1.78E-03 |
| 59 | GO:0000413: protein peptidyl-prolyl isomerization | 2.13E-03 |
| 60 | GO:0042335: cuticle development | 2.13E-03 |
| 61 | GO:0009793: embryo development ending in seed dormancy | 2.16E-03 |
| 62 | GO:0006564: L-serine biosynthetic process | 2.27E-03 |
| 63 | GO:0010236: plastoquinone biosynthetic process | 2.27E-03 |
| 64 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.27E-03 |
| 65 | GO:0048359: mucilage metabolic process involved in seed coat development | 2.27E-03 |
| 66 | GO:0032543: mitochondrial translation | 2.27E-03 |
| 67 | GO:0016458: gene silencing | 2.80E-03 |
| 68 | GO:0042549: photosystem II stabilization | 2.80E-03 |
| 69 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.80E-03 |
| 70 | GO:0000470: maturation of LSU-rRNA | 2.80E-03 |
| 71 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.80E-03 |
| 72 | GO:0010019: chloroplast-nucleus signaling pathway | 3.36E-03 |
| 73 | GO:0042372: phylloquinone biosynthetic process | 3.36E-03 |
| 74 | GO:1901259: chloroplast rRNA processing | 3.36E-03 |
| 75 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.36E-03 |
| 76 | GO:0017148: negative regulation of translation | 3.36E-03 |
| 77 | GO:0006694: steroid biosynthetic process | 3.36E-03 |
| 78 | GO:0009828: plant-type cell wall loosening | 3.42E-03 |
| 79 | GO:0006400: tRNA modification | 3.97E-03 |
| 80 | GO:0009772: photosynthetic electron transport in photosystem II | 3.97E-03 |
| 81 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.97E-03 |
| 82 | GO:0009790: embryo development | 4.59E-03 |
| 83 | GO:0006605: protein targeting | 4.60E-03 |
| 84 | GO:0048564: photosystem I assembly | 4.60E-03 |
| 85 | GO:0045292: mRNA cis splicing, via spliceosome | 4.60E-03 |
| 86 | GO:0030091: protein repair | 4.60E-03 |
| 87 | GO:0042255: ribosome assembly | 4.60E-03 |
| 88 | GO:0009808: lignin metabolic process | 5.27E-03 |
| 89 | GO:0071482: cellular response to light stimulus | 5.27E-03 |
| 90 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.27E-03 |
| 91 | GO:0009657: plastid organization | 5.27E-03 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 5.32E-03 |
| 93 | GO:0000373: Group II intron splicing | 5.98E-03 |
| 94 | GO:0015780: nucleotide-sugar transport | 5.98E-03 |
| 95 | GO:0009631: cold acclimation | 6.15E-03 |
| 96 | GO:0034599: cellular response to oxidative stress | 7.05E-03 |
| 97 | GO:0030422: production of siRNA involved in RNA interference | 7.47E-03 |
| 98 | GO:0045036: protein targeting to chloroplast | 7.47E-03 |
| 99 | GO:0006949: syncytium formation | 7.47E-03 |
| 100 | GO:0006352: DNA-templated transcription, initiation | 8.27E-03 |
| 101 | GO:0009073: aromatic amino acid family biosynthetic process | 8.27E-03 |
| 102 | GO:0043085: positive regulation of catalytic activity | 8.27E-03 |
| 103 | GO:0009826: unidimensional cell growth | 9.44E-03 |
| 104 | GO:0009767: photosynthetic electron transport chain | 9.94E-03 |
| 105 | GO:2000012: regulation of auxin polar transport | 9.94E-03 |
| 106 | GO:0010143: cutin biosynthetic process | 1.08E-02 |
| 107 | GO:0009664: plant-type cell wall organization | 1.09E-02 |
| 108 | GO:0000027: ribosomal large subunit assembly | 1.36E-02 |
| 109 | GO:0006418: tRNA aminoacylation for protein translation | 1.46E-02 |
| 110 | GO:0006306: DNA methylation | 1.56E-02 |
| 111 | GO:0045454: cell redox homeostasis | 1.64E-02 |
| 112 | GO:0006869: lipid transport | 1.84E-02 |
| 113 | GO:0009306: protein secretion | 1.88E-02 |
| 114 | GO:0019722: calcium-mediated signaling | 1.88E-02 |
| 115 | GO:0080022: primary root development | 2.11E-02 |
| 116 | GO:0008033: tRNA processing | 2.11E-02 |
| 117 | GO:0006662: glycerol ether metabolic process | 2.22E-02 |
| 118 | GO:0006342: chromatin silencing | 2.22E-02 |
| 119 | GO:0007018: microtubule-based movement | 2.34E-02 |
| 120 | GO:0009791: post-embryonic development | 2.46E-02 |
| 121 | GO:0016132: brassinosteroid biosynthetic process | 2.58E-02 |
| 122 | GO:0000302: response to reactive oxygen species | 2.58E-02 |
| 123 | GO:0006633: fatty acid biosynthetic process | 2.64E-02 |
| 124 | GO:0032502: developmental process | 2.70E-02 |
| 125 | GO:0016032: viral process | 2.70E-02 |
| 126 | GO:0045490: pectin catabolic process | 2.90E-02 |
| 127 | GO:0007267: cell-cell signaling | 3.09E-02 |
| 128 | GO:0051607: defense response to virus | 3.22E-02 |
| 129 | GO:0009816: defense response to bacterium, incompatible interaction | 3.49E-02 |
| 130 | GO:0042742: defense response to bacterium | 3.52E-02 |
| 131 | GO:0016311: dephosphorylation | 3.91E-02 |
| 132 | GO:0018298: protein-chromophore linkage | 4.05E-02 |
| 133 | GO:0048481: plant ovule development | 4.05E-02 |
| 134 | GO:0009834: plant-type secondary cell wall biogenesis | 4.34E-02 |
| 135 | GO:0006811: ion transport | 4.34E-02 |
| 136 | GO:0009416: response to light stimulus | 4.35E-02 |
| 137 | GO:0007568: aging | 4.49E-02 |
| 138 | GO:0009637: response to blue light | 4.79E-02 |
| 139 | GO:0045087: innate immune response | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0050614: delta24-sterol reductase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 6 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 7 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 8 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 9 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 10 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 6.42E-26 |
| 12 | GO:0003735: structural constituent of ribosome | 2.76E-20 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.62E-08 |
| 14 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.13E-06 |
| 15 | GO:0043023: ribosomal large subunit binding | 2.55E-05 |
| 16 | GO:0016851: magnesium chelatase activity | 2.55E-05 |
| 17 | GO:0043495: protein anchor | 4.61E-05 |
| 18 | GO:0005528: FK506 binding | 8.09E-05 |
| 19 | GO:0051087: chaperone binding | 9.40E-05 |
| 20 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.47E-04 |
| 21 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.60E-04 |
| 22 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.60E-04 |
| 23 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.60E-04 |
| 24 | GO:0004655: porphobilinogen synthase activity | 2.60E-04 |
| 25 | GO:0003723: RNA binding | 4.58E-04 |
| 26 | GO:0015099: nickel cation transmembrane transporter activity | 5.74E-04 |
| 27 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.74E-04 |
| 28 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.74E-04 |
| 29 | GO:0000774: adenyl-nucleotide exchange factor activity | 5.74E-04 |
| 30 | GO:0016630: protochlorophyllide reductase activity | 5.74E-04 |
| 31 | GO:0008266: poly(U) RNA binding | 8.52E-04 |
| 32 | GO:0030267: glyoxylate reductase (NADP) activity | 9.31E-04 |
| 33 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 9.31E-04 |
| 34 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 9.31E-04 |
| 35 | GO:0002161: aminoacyl-tRNA editing activity | 9.31E-04 |
| 36 | GO:0004550: nucleoside diphosphate kinase activity | 1.33E-03 |
| 37 | GO:0008097: 5S rRNA binding | 1.33E-03 |
| 38 | GO:0035197: siRNA binding | 1.33E-03 |
| 39 | GO:0030570: pectate lyase activity | 1.68E-03 |
| 40 | GO:0004392: heme oxygenase (decyclizing) activity | 1.78E-03 |
| 41 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.78E-03 |
| 42 | GO:0004659: prenyltransferase activity | 1.78E-03 |
| 43 | GO:0001053: plastid sigma factor activity | 1.78E-03 |
| 44 | GO:0016836: hydro-lyase activity | 1.78E-03 |
| 45 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.78E-03 |
| 46 | GO:0016987: sigma factor activity | 1.78E-03 |
| 47 | GO:0016788: hydrolase activity, acting on ester bonds | 2.12E-03 |
| 48 | GO:0003959: NADPH dehydrogenase activity | 2.27E-03 |
| 49 | GO:0004040: amidase activity | 2.27E-03 |
| 50 | GO:0016688: L-ascorbate peroxidase activity | 2.80E-03 |
| 51 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.80E-03 |
| 52 | GO:0004130: cytochrome-c peroxidase activity | 2.80E-03 |
| 53 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.80E-03 |
| 54 | GO:0051082: unfolded protein binding | 2.83E-03 |
| 55 | GO:0051920: peroxiredoxin activity | 3.36E-03 |
| 56 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 3.36E-03 |
| 57 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.36E-03 |
| 58 | GO:0016831: carboxy-lyase activity | 3.97E-03 |
| 59 | GO:0019899: enzyme binding | 3.97E-03 |
| 60 | GO:0016209: antioxidant activity | 4.60E-03 |
| 61 | GO:0008312: 7S RNA binding | 4.60E-03 |
| 62 | GO:0004033: aldo-keto reductase (NADP) activity | 4.60E-03 |
| 63 | GO:0052747: sinapyl alcohol dehydrogenase activity | 4.60E-03 |
| 64 | GO:0047617: acyl-CoA hydrolase activity | 6.71E-03 |
| 65 | GO:0008047: enzyme activator activity | 7.47E-03 |
| 66 | GO:0003729: mRNA binding | 7.48E-03 |
| 67 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 9.09E-03 |
| 68 | GO:0004521: endoribonuclease activity | 9.09E-03 |
| 69 | GO:0000049: tRNA binding | 9.09E-03 |
| 70 | GO:0043621: protein self-association | 9.42E-03 |
| 71 | GO:0008081: phosphoric diester hydrolase activity | 9.94E-03 |
| 72 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.08E-02 |
| 73 | GO:0052689: carboxylic ester hydrolase activity | 1.48E-02 |
| 74 | GO:0016746: transferase activity, transferring acyl groups | 1.73E-02 |
| 75 | GO:0042803: protein homodimerization activity | 1.74E-02 |
| 76 | GO:0022891: substrate-specific transmembrane transporter activity | 1.77E-02 |
| 77 | GO:0003727: single-stranded RNA binding | 1.88E-02 |
| 78 | GO:0008514: organic anion transmembrane transporter activity | 1.88E-02 |
| 79 | GO:0047134: protein-disulfide reductase activity | 1.99E-02 |
| 80 | GO:0004812: aminoacyl-tRNA ligase activity | 1.99E-02 |
| 81 | GO:0005507: copper ion binding | 2.10E-02 |
| 82 | GO:0008080: N-acetyltransferase activity | 2.22E-02 |
| 83 | GO:0016829: lyase activity | 2.28E-02 |
| 84 | GO:0004791: thioredoxin-disulfide reductase activity | 2.34E-02 |
| 85 | GO:0010181: FMN binding | 2.34E-02 |
| 86 | GO:0004519: endonuclease activity | 2.37E-02 |
| 87 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.83E-02 |
| 88 | GO:0016791: phosphatase activity | 2.96E-02 |
| 89 | GO:0008483: transaminase activity | 3.09E-02 |
| 90 | GO:0016597: amino acid binding | 3.22E-02 |
| 91 | GO:0008289: lipid binding | 3.23E-02 |
| 92 | GO:0016168: chlorophyll binding | 3.49E-02 |
| 93 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.05E-02 |
| 94 | GO:0000287: magnesium ion binding | 4.39E-02 |
| 95 | GO:0004601: peroxidase activity | 4.48E-02 |
| 96 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.49E-02 |
| 97 | GO:0003746: translation elongation factor activity | 4.79E-02 |
| 98 | GO:0003993: acid phosphatase activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 3 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 4 | GO:0009570: chloroplast stroma | 2.24E-58 |
| 5 | GO:0009507: chloroplast | 2.10E-56 |
| 6 | GO:0009941: chloroplast envelope | 2.35E-34 |
| 7 | GO:0009579: thylakoid | 4.09E-21 |
| 8 | GO:0005840: ribosome | 4.80E-21 |
| 9 | GO:0009534: chloroplast thylakoid | 1.60E-14 |
| 10 | GO:0031977: thylakoid lumen | 4.38E-10 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 1.01E-09 |
| 12 | GO:0009535: chloroplast thylakoid membrane | 4.14E-09 |
| 13 | GO:0010007: magnesium chelatase complex | 1.13E-05 |
| 14 | GO:0000311: plastid large ribosomal subunit | 3.21E-05 |
| 15 | GO:0009547: plastid ribosome | 2.60E-04 |
| 16 | GO:0080085: signal recognition particle, chloroplast targeting | 5.74E-04 |
| 17 | GO:0031969: chloroplast membrane | 6.09E-04 |
| 18 | GO:0000312: plastid small ribosomal subunit | 8.52E-04 |
| 19 | GO:0042651: thylakoid membrane | 1.28E-03 |
| 20 | GO:0005719: nuclear euchromatin | 1.33E-03 |
| 21 | GO:0015935: small ribosomal subunit | 1.41E-03 |
| 22 | GO:0009536: plastid | 1.57E-03 |
| 23 | GO:0046658: anchored component of plasma membrane | 1.62E-03 |
| 24 | GO:0022625: cytosolic large ribosomal subunit | 3.09E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 4.08E-03 |
| 26 | GO:0005759: mitochondrial matrix | 5.04E-03 |
| 27 | GO:0016020: membrane | 5.23E-03 |
| 28 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.27E-03 |
| 29 | GO:0015934: large ribosomal subunit | 6.15E-03 |
| 30 | GO:0015030: Cajal body | 6.71E-03 |
| 31 | GO:0005618: cell wall | 7.70E-03 |
| 32 | GO:0090404: pollen tube tip | 8.27E-03 |
| 33 | GO:0043234: protein complex | 1.27E-02 |
| 34 | GO:0009654: photosystem II oxygen evolving complex | 1.46E-02 |
| 35 | GO:0009532: plastid stroma | 1.56E-02 |
| 36 | GO:0009505: plant-type cell wall | 1.67E-02 |
| 37 | GO:0005871: kinesin complex | 1.99E-02 |
| 38 | GO:0031225: anchored component of membrane | 2.40E-02 |
| 39 | GO:0043231: intracellular membrane-bounded organelle | 2.41E-02 |
| 40 | GO:0009523: photosystem II | 2.46E-02 |
| 41 | GO:0019898: extrinsic component of membrane | 2.46E-02 |
| 42 | GO:0010319: stromule | 3.09E-02 |
| 43 | GO:0009295: nucleoid | 3.09E-02 |
| 44 | GO:0022627: cytosolic small ribosomal subunit | 3.84E-02 |
| 45 | GO:0048046: apoplast | 4.06E-02 |
| 46 | GO:0022626: cytosolic ribosome | 4.12E-02 |