co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
2	GO:0046109: uridine biosynthetic process	0.00E+00
3	GO:0033587: shikimate biosynthetic process	0.00E+00
4	GO:0009991: response to extracellular stimulus	0.00E+00
5	GO:0006542: glutamine biosynthetic process	1.91E-06
6	GO:0006631: fatty acid metabolic process	3.49E-05
7	GO:0035266: meristem growth	4.04E-05
8	GO:0007292: female gamete generation	4.04E-05
9	GO:0019478: D-amino acid catabolic process	4.04E-05
10	GO:0051788: response to misfolded protein	1.00E-04
11	GO:0051258: protein polymerization	1.00E-04
12	GO:0015865: purine nucleotide transport	1.00E-04
13	GO:0019441: tryptophan catabolic process to kynurenine	1.00E-04
14	GO:0010476: gibberellin mediated signaling pathway	1.73E-04
15	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.73E-04
16	GO:0060968: regulation of gene silencing	1.73E-04
17	GO:1900055: regulation of leaf senescence	1.73E-04
18	GO:0010359: regulation of anion channel activity	1.73E-04
19	GO:0006633: fatty acid biosynthetic process	2.02E-04
20	GO:0010150: leaf senescence	2.30E-04
21	GO:0046902: regulation of mitochondrial membrane permeability	2.55E-04
22	GO:0009399: nitrogen fixation	2.55E-04
23	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.55E-04
24	GO:0001676: long-chain fatty acid metabolic process	2.55E-04
25	GO:0046686: response to cadmium ion	2.69E-04
26	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	3.43E-04
27	GO:0042128: nitrate assimilation	3.93E-04
28	GO:0030244: cellulose biosynthetic process	4.58E-04
29	GO:0048232: male gamete generation	5.37E-04
30	GO:0043248: proteasome assembly	5.37E-04
31	GO:1902456: regulation of stomatal opening	5.37E-04
32	GO:0006014: D-ribose metabolic process	5.37E-04
33	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.37E-04
34	GO:0048827: phyllome development	5.37E-04
35	GO:0045087: innate immune response	5.76E-04
36	GO:0048444: floral organ morphogenesis	6.40E-04
37	GO:0051707: response to other organism	7.35E-04
38	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	7.49E-04
39	GO:0071669: plant-type cell wall organization or biogenesis	7.49E-04
40	GO:0006605: protein targeting	8.61E-04
41	GO:0010078: maintenance of root meristem identity	8.61E-04
42	GO:0030968: endoplasmic reticulum unfolded protein response	9.77E-04
43	GO:0006098: pentose-phosphate shunt	1.10E-03
44	GO:0009056: catabolic process	1.10E-03
45	GO:0006096: glycolytic process	1.14E-03
46	GO:0006468: protein phosphorylation	1.19E-03
47	GO:2000280: regulation of root development	1.22E-03
48	GO:0043069: negative regulation of programmed cell death	1.35E-03
49	GO:0048829: root cap development	1.35E-03
50	GO:0018105: peptidyl-serine phosphorylation	1.40E-03
51	GO:0010015: root morphogenesis	1.49E-03
52	GO:0072593: reactive oxygen species metabolic process	1.49E-03
53	GO:0012501: programmed cell death	1.63E-03
54	GO:0009738: abscisic acid-activated signaling pathway	1.69E-03
55	GO:0009845: seed germination	1.83E-03
56	GO:0009933: meristem structural organization	1.92E-03
57	GO:0009887: animal organ morphogenesis	1.92E-03
58	GO:0090351: seedling development	2.07E-03
59	GO:2000377: regulation of reactive oxygen species metabolic process	2.39E-03
60	GO:0031408: oxylipin biosynthetic process	2.72E-03
61	GO:0030433: ubiquitin-dependent ERAD pathway	2.89E-03
62	GO:0010227: floral organ abscission	3.06E-03
63	GO:0000271: polysaccharide biosynthetic process	3.61E-03
64	GO:0010154: fruit development	3.80E-03
65	GO:0019252: starch biosynthetic process	4.19E-03
66	GO:0006635: fatty acid beta-oxidation	4.38E-03
67	GO:0046777: protein autophosphorylation	4.72E-03
68	GO:0006914: autophagy	5.00E-03
69	GO:0071805: potassium ion transmembrane transport	5.21E-03
70	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.86E-03
71	GO:0010029: regulation of seed germination	5.86E-03
72	GO:0009817: defense response to fungus, incompatible interaction	6.77E-03
73	GO:0048364: root development	6.78E-03
74	GO:0048767: root hair elongation	7.01E-03
75	GO:0010311: lateral root formation	7.01E-03
76	GO:0009832: plant-type cell wall biogenesis	7.01E-03
77	GO:0006499: N-terminal protein myristoylation	7.25E-03
78	GO:0048527: lateral root development	7.49E-03
79	GO:0010119: regulation of stomatal movement	7.49E-03
80	GO:0009867: jasmonic acid mediated signaling pathway	7.99E-03
81	GO:0016051: carbohydrate biosynthetic process	7.99E-03
82	GO:0006839: mitochondrial transport	8.75E-03
83	GO:0009636: response to toxic substance	1.03E-02
84	GO:0009965: leaf morphogenesis	1.03E-02
85	GO:0006855: drug transmembrane transport	1.06E-02
86	GO:0031347: regulation of defense response	1.09E-02
87	GO:0009809: lignin biosynthetic process	1.18E-02
88	GO:0006813: potassium ion transport	1.18E-02
89	GO:0035556: intracellular signal transduction	1.22E-02
90	GO:0048367: shoot system development	1.35E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.41E-02
92	GO:0009739: response to gibberellin	2.41E-02
93	GO:0009723: response to ethylene	3.37E-02
94	GO:0080167: response to karrikin	3.54E-02
95	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.63E-02
96	GO:0016192: vesicle-mediated transport	3.67E-02
97	GO:0045454: cell redox homeostasis	4.02E-02
98	GO:0009751: response to salicylic acid	4.62E-02
99	GO:0009408: response to heat	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
2	GO:0004356: glutamate-ammonia ligase activity	3.25E-06
3	GO:0102391: decanoate--CoA ligase activity	7.36E-06
4	GO:0004467: long-chain fatty acid-CoA ligase activity	1.02E-05
5	GO:0004743: pyruvate kinase activity	2.74E-05
6	GO:0030955: potassium ion binding	2.74E-05
7	GO:0005524: ATP binding	3.63E-05
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.04E-05
9	GO:0019707: protein-cysteine S-acyltransferase activity	4.04E-05
10	GO:0004061: arylformamidase activity	1.00E-04
11	GO:0010331: gibberellin binding	1.00E-04
12	GO:0016301: kinase activity	1.17E-04
13	GO:0005047: signal recognition particle binding	1.73E-04
14	GO:0004751: ribose-5-phosphate isomerase activity	1.73E-04
15	GO:0004383: guanylate cyclase activity	1.73E-04
16	GO:0001653: peptide receptor activity	2.55E-04
17	GO:0004300: enoyl-CoA hydratase activity	2.55E-04
18	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.93E-04
19	GO:0000287: magnesium ion binding	3.98E-04
20	GO:0004683: calmodulin-dependent protein kinase activity	4.15E-04
21	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	4.37E-04
22	GO:0005471: ATP:ADP antiporter activity	4.37E-04
23	GO:0004674: protein serine/threonine kinase activity	4.89E-04
24	GO:0036402: proteasome-activating ATPase activity	5.37E-04
25	GO:0004012: phospholipid-translocating ATPase activity	6.40E-04
26	GO:0004747: ribokinase activity	6.40E-04
27	GO:0051753: mannan synthase activity	6.40E-04
28	GO:0102425: myricetin 3-O-glucosyltransferase activity	7.49E-04
29	GO:0102360: daphnetin 3-O-glucosyltransferase activity	7.49E-04
30	GO:0004033: aldo-keto reductase (NADP) activity	8.61E-04
31	GO:0008865: fructokinase activity	8.61E-04
32	GO:0047893: flavonol 3-O-glucosyltransferase activity	8.61E-04
33	GO:0003924: GTPase activity	8.69E-04
34	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.10E-03
35	GO:0047617: acyl-CoA hydrolase activity	1.22E-03
36	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.77E-03
37	GO:0017025: TBP-class protein binding	2.07E-03
38	GO:0043130: ubiquitin binding	2.39E-03
39	GO:0015079: potassium ion transmembrane transporter activity	2.55E-03
40	GO:0035251: UDP-glucosyltransferase activity	2.72E-03
41	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.72E-03
42	GO:0016760: cellulose synthase (UDP-forming) activity	3.06E-03
43	GO:0016759: cellulose synthase activity	5.00E-03
44	GO:0051213: dioxygenase activity	5.64E-03
45	GO:0009055: electron carrier activity	6.98E-03
46	GO:0015238: drug transmembrane transporter activity	7.01E-03
47	GO:0051537: 2 iron, 2 sulfur cluster binding	1.01E-02
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.41E-02
49	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.41E-02
50	GO:0015035: protein disulfide oxidoreductase activity	1.54E-02
51	GO:0005507: copper ion binding	1.65E-02
52	GO:0005516: calmodulin binding	1.74E-02
53	GO:0016758: transferase activity, transferring hexosyl groups	1.74E-02
54	GO:0005525: GTP binding	1.91E-02
55	GO:0015297: antiporter activity	2.15E-02
56	GO:0008194: UDP-glycosyltransferase activity	2.41E-02
57	GO:0004601: peroxidase activity	3.04E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	3.08E-02
59	GO:0050660: flavin adenine dinucleotide binding	3.37E-02
60	GO:0004871: signal transducer activity	4.16E-02
61	GO:0042803: protein homodimerization activity	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0000138: Golgi trans cisterna	4.04E-05
3	GO:0005886: plasma membrane	2.66E-04
4	GO:0005829: cytosol	4.31E-04
5	GO:0030173: integral component of Golgi membrane	6.40E-04
6	GO:0031597: cytosolic proteasome complex	6.40E-04
7	GO:0031595: nuclear proteasome complex	7.49E-04
8	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.77E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	1.22E-03
10	GO:0090404: pollen tube tip	1.49E-03
11	GO:0005769: early endosome	2.23E-03
12	GO:0005802: trans-Golgi network	3.20E-03
13	GO:0005783: endoplasmic reticulum	3.81E-03
14	GO:0005737: cytoplasm	4.12E-03
15	GO:0031902: late endosome membrane	9.01E-03
16	GO:0022626: cytosolic ribosome	1.11E-02
17	GO:0000502: proteasome complex	1.18E-02
18	GO:0005777: peroxisome	1.33E-02
19	GO:0005834: heterotrimeric G-protein complex	1.38E-02
20	GO:0005794: Golgi apparatus	1.95E-02
21	GO:0005768: endosome	2.11E-02
22	GO:0016021: integral component of membrane	2.34E-02
23	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.24E-02
24	GO:0005743: mitochondrial inner membrane	4.43E-02