co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	7.40E-06
4	GO:0015979: photosynthesis	1.14E-05
5	GO:0009913: epidermal cell differentiation	3.44E-05
6	GO:0006605: protein targeting	8.48E-05
7	GO:0010027: thylakoid membrane organization	1.28E-04
8	GO:0043489: RNA stabilization	1.30E-04
9	GO:0009451: RNA modification	2.39E-04
10	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-04
11	GO:0001736: establishment of planar polarity	2.99E-04
12	GO:0007023: post-chaperonin tubulin folding pathway	2.99E-04
13	GO:0010024: phytochromobilin biosynthetic process	2.99E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.99E-04
15	GO:0035304: regulation of protein dephosphorylation	2.99E-04
16	GO:0010115: regulation of abscisic acid biosynthetic process	2.99E-04
17	GO:0010207: photosystem II assembly	3.27E-04
18	GO:0006788: heme oxidation	4.92E-04
19	GO:0090391: granum assembly	4.92E-04
20	GO:0010021: amylopectin biosynthetic process	9.34E-04
21	GO:0015994: chlorophyll metabolic process	9.34E-04
22	GO:0048825: cotyledon development	1.02E-03
23	GO:0006564: L-serine biosynthetic process	1.18E-03
24	GO:0045038: protein import into chloroplast thylakoid membrane	1.18E-03
25	GO:0048497: maintenance of floral organ identity	1.18E-03
26	GO:0007021: tubulin complex assembly	1.18E-03
27	GO:0006561: proline biosynthetic process	1.45E-03
28	GO:0006751: glutathione catabolic process	1.45E-03
29	GO:0042549: photosystem II stabilization	1.45E-03
30	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.45E-03
31	GO:0006655: phosphatidylglycerol biosynthetic process	1.45E-03
32	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.73E-03
33	GO:0006400: tRNA modification	2.04E-03
34	GO:0009395: phospholipid catabolic process	2.04E-03
35	GO:0009772: photosynthetic electron transport in photosystem II	2.04E-03
36	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.04E-03
37	GO:0010196: nonphotochemical quenching	2.04E-03
38	GO:1900057: positive regulation of leaf senescence	2.04E-03
39	GO:0048564: photosystem I assembly	2.36E-03
40	GO:0045292: mRNA cis splicing, via spliceosome	2.36E-03
41	GO:0005978: glycogen biosynthetic process	2.36E-03
42	GO:0042255: ribosome assembly	2.36E-03
43	GO:0006353: DNA-templated transcription, termination	2.36E-03
44	GO:0030001: metal ion transport	2.88E-03
45	GO:0000373: Group II intron splicing	3.04E-03
46	GO:0005982: starch metabolic process	3.41E-03
47	GO:0010205: photoinhibition	3.41E-03
48	GO:0009688: abscisic acid biosynthetic process	3.79E-03
49	GO:0048829: root cap development	3.79E-03
50	GO:0009750: response to fructose	4.18E-03
51	GO:0048765: root hair cell differentiation	4.18E-03
52	GO:0009773: photosynthetic electron transport in photosystem I	4.18E-03
53	GO:0019684: photosynthesis, light reaction	4.18E-03
54	GO:2000012: regulation of auxin polar transport	5.00E-03
55	GO:0010628: positive regulation of gene expression	5.00E-03
56	GO:0010143: cutin biosynthetic process	5.44E-03
57	GO:0032259: methylation	5.75E-03
58	GO:0008152: metabolic process	6.88E-03
59	GO:0007017: microtubule-based process	7.30E-03
60	GO:0009695: jasmonic acid biosynthetic process	7.30E-03
61	GO:0003333: amino acid transmembrane transport	7.79E-03
62	GO:0031408: oxylipin biosynthetic process	7.79E-03
63	GO:0009845: seed germination	8.42E-03
64	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.82E-03
65	GO:0009306: protein secretion	9.35E-03
66	GO:0080022: primary root development	1.04E-02
67	GO:0008033: tRNA processing	1.04E-02
68	GO:0000413: protein peptidyl-prolyl isomerization	1.04E-02
69	GO:0042335: cuticle development	1.04E-02
70	GO:0010182: sugar mediated signaling pathway	1.10E-02
71	GO:0009958: positive gravitropism	1.10E-02
72	GO:0009735: response to cytokinin	1.12E-02
73	GO:0019252: starch biosynthetic process	1.22E-02
74	GO:0007166: cell surface receptor signaling pathway	1.23E-02
75	GO:0008380: RNA splicing	1.29E-02
76	GO:0032502: developmental process	1.34E-02
77	GO:0016032: viral process	1.34E-02
78	GO:0009828: plant-type cell wall loosening	1.46E-02
79	GO:0051607: defense response to virus	1.59E-02
80	GO:0000910: cytokinesis	1.59E-02
81	GO:0010311: lateral root formation	2.07E-02
82	GO:0007568: aging	2.22E-02
83	GO:0009631: cold acclimation	2.22E-02
84	GO:0006865: amino acid transport	2.29E-02
85	GO:0045087: innate immune response	2.37E-02
86	GO:0009793: embryo development ending in seed dormancy	2.81E-02
87	GO:0009926: auxin polar transport	2.84E-02
88	GO:0006855: drug transmembrane transport	3.17E-02
89	GO:0006397: mRNA processing	3.19E-02
90	GO:0009664: plant-type cell wall organization	3.34E-02
91	GO:0009734: auxin-activated signaling pathway	4.30E-02
92	GO:0042545: cell wall modification	4.41E-02
93	GO:0009624: response to nematode	4.51E-02
94	GO:0006396: RNA processing	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	7.44E-06
6	GO:0005528: FK506 binding	1.73E-05
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.44E-05
8	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.30E-04
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.30E-04
10	GO:0010242: oxygen evolving activity	1.30E-04
11	GO:0004321: fatty-acyl-CoA synthase activity	1.30E-04
12	GO:0047746: chlorophyllase activity	2.99E-04
13	GO:0003839: gamma-glutamylcyclotransferase activity	2.99E-04
14	GO:0004617: phosphoglycerate dehydrogenase activity	2.99E-04
15	GO:0003844: 1,4-alpha-glucan branching enzyme activity	2.99E-04
16	GO:0016630: protochlorophyllide reductase activity	2.99E-04
17	GO:0008266: poly(U) RNA binding	3.27E-04
18	GO:0016788: hydrolase activity, acting on ester bonds	4.76E-04
19	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	4.92E-04
20	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	4.92E-04
21	GO:0043169: cation binding	4.92E-04
22	GO:0048487: beta-tubulin binding	7.04E-04
23	GO:0004392: heme oxygenase (decyclizing) activity	9.34E-04
24	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	9.34E-04
25	GO:0010011: auxin binding	9.34E-04
26	GO:0004045: aminoacyl-tRNA hydrolase activity	9.34E-04
27	GO:0010328: auxin influx transmembrane transporter activity	9.34E-04
28	GO:0003959: NADPH dehydrogenase activity	1.18E-03
29	GO:0003723: RNA binding	1.24E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.45E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.45E-03
32	GO:0016597: amino acid binding	1.46E-03
33	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.73E-03
34	GO:0016207: 4-coumarate-CoA ligase activity	3.04E-03
35	GO:0016491: oxidoreductase activity	3.22E-03
36	GO:0047617: acyl-CoA hydrolase activity	3.41E-03
37	GO:0004565: beta-galactosidase activity	5.00E-03
38	GO:0004022: alcohol dehydrogenase (NAD) activity	5.00E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.44E-03
40	GO:0016746: transferase activity, transferring acyl groups	6.40E-03
41	GO:0004519: endonuclease activity	6.76E-03
42	GO:0051087: chaperone binding	7.30E-03
43	GO:0043424: protein histidine kinase binding	7.30E-03
44	GO:0016787: hydrolase activity	7.52E-03
45	GO:0019843: rRNA binding	7.79E-03
46	GO:0003727: single-stranded RNA binding	9.35E-03
47	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.00E-02
48	GO:0016791: phosphatase activity	1.46E-02
49	GO:0005200: structural constituent of cytoskeleton	1.53E-02
50	GO:0008168: methyltransferase activity	1.61E-02
51	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.79E-02
52	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.00E-02
53	GO:0052689: carboxylic ester hydrolase activity	2.29E-02
54	GO:0005525: GTP binding	2.36E-02
55	GO:0003746: translation elongation factor activity	2.37E-02
56	GO:0003993: acid phosphatase activity	2.45E-02
57	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
58	GO:0005509: calcium ion binding	2.77E-02
59	GO:0015293: symporter activity	3.08E-02
60	GO:0051287: NAD binding	3.25E-02
61	GO:0003690: double-stranded DNA binding	3.60E-02
62	GO:0015171: amino acid transmembrane transporter activity	3.77E-02
63	GO:0045330: aspartyl esterase activity	3.77E-02
64	GO:0008289: lipid binding	4.24E-02
65	GO:0016874: ligase activity	4.32E-02
66	GO:0030599: pectinesterase activity	4.32E-02
67	GO:0022857: transmembrane transporter activity	4.32E-02
68	GO:0016887: ATPase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.67E-18
2	GO:0009570: chloroplast stroma	6.70E-11
3	GO:0009543: chloroplast thylakoid lumen	1.46E-08
4	GO:0031977: thylakoid lumen	1.97E-08
5	GO:0009535: chloroplast thylakoid membrane	5.57E-08
6	GO:0009534: chloroplast thylakoid	1.58E-07
7	GO:0009941: chloroplast envelope	2.66E-06
8	GO:0010007: magnesium chelatase complex	3.17E-06
9	GO:0009579: thylakoid	2.05E-05
10	GO:0009515: granal stacked thylakoid	1.30E-04
11	GO:0030095: chloroplast photosystem II	3.27E-04
12	GO:0009654: photosystem II oxygen evolving complex	5.01E-04
13	GO:0015630: microtubule cytoskeleton	7.04E-04
14	GO:0019898: extrinsic component of membrane	1.02E-03
15	GO:0030529: intracellular ribonucleoprotein complex	1.55E-03
16	GO:0009986: cell surface	2.04E-03
17	GO:0009533: chloroplast stromal thylakoid	2.04E-03
18	GO:0009501: amyloplast	2.36E-03
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.69E-03
20	GO:0008180: COP9 signalosome	3.04E-03
21	GO:0031969: chloroplast membrane	3.71E-03
22	GO:0090404: pollen tube tip	4.18E-03
23	GO:0000312: plastid small ribosomal subunit	5.44E-03
24	GO:0005875: microtubule associated complex	6.34E-03
25	GO:0043231: intracellular membrane-bounded organelle	6.88E-03
26	GO:0005618: cell wall	7.20E-03
27	GO:0042651: thylakoid membrane	7.30E-03
28	GO:0009505: plant-type cell wall	1.13E-02
29	GO:0009523: photosystem II	1.22E-02
30	GO:0019005: SCF ubiquitin ligase complex	2.00E-02
31	GO:0005768: endosome	2.68E-02
32	GO:0000502: proteasome complex	3.51E-02