Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G22590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015882: L-ascorbic acid transport0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:0006671: phytosphingosine metabolic process0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0051503: adenine nucleotide transport0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0006418: tRNA aminoacylation for protein translation2.42E-06
11GO:0010270: photosystem II oxygen evolving complex assembly2.65E-06
12GO:0006695: cholesterol biosynthetic process2.65E-06
13GO:0009658: chloroplast organization4.35E-06
14GO:0019253: reductive pentose-phosphate cycle3.98E-05
15GO:0015976: carbon utilization3.99E-05
16GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.39E-04
17GO:0010028: xanthophyll cycle2.39E-04
18GO:0006430: lysyl-tRNA aminoacylation2.39E-04
19GO:0006427: histidyl-tRNA aminoacylation2.39E-04
20GO:0009657: plastid organization2.67E-04
21GO:0071482: cellular response to light stimulus2.67E-04
22GO:0033384: geranyl diphosphate biosynthetic process3.23E-04
23GO:0045337: farnesyl diphosphate biosynthetic process3.23E-04
24GO:0010027: thylakoid membrane organization4.11E-04
25GO:0009073: aromatic amino acid family biosynthetic process5.19E-04
26GO:0006415: translational termination5.19E-04
27GO:0006352: DNA-templated transcription, initiation5.19E-04
28GO:0006650: glycerophospholipid metabolic process5.29E-04
29GO:0018022: peptidyl-lysine methylation5.29E-04
30GO:0006568: tryptophan metabolic process5.29E-04
31GO:0043039: tRNA aminoacylation5.29E-04
32GO:0048481: plant ovule development5.78E-04
33GO:0010207: photosystem II assembly7.56E-04
34GO:0010020: chloroplast fission7.56E-04
35GO:0090351: seedling development8.45E-04
36GO:0019563: glycerol catabolic process8.60E-04
37GO:0006518: peptide metabolic process8.60E-04
38GO:0006433: prolyl-tRNA aminoacylation8.60E-04
39GO:0006696: ergosterol biosynthetic process8.60E-04
40GO:0032504: multicellular organism reproduction8.60E-04
41GO:0010581: regulation of starch biosynthetic process8.60E-04
42GO:0006228: UTP biosynthetic process1.23E-03
43GO:0016556: mRNA modification1.23E-03
44GO:2001141: regulation of RNA biosynthetic process1.23E-03
45GO:0006241: CTP biosynthetic process1.23E-03
46GO:0046902: regulation of mitochondrial membrane permeability1.23E-03
47GO:0033014: tetrapyrrole biosynthetic process1.23E-03
48GO:0006165: nucleoside diphosphate phosphorylation1.23E-03
49GO:0061077: chaperone-mediated protein folding1.25E-03
50GO:0006730: one-carbon metabolic process1.36E-03
51GO:0051567: histone H3-K9 methylation1.64E-03
52GO:0006546: glycine catabolic process1.64E-03
53GO:0071483: cellular response to blue light1.64E-03
54GO:0010037: response to carbon dioxide1.64E-03
55GO:0006808: regulation of nitrogen utilization1.64E-03
56GO:0010109: regulation of photosynthesis1.64E-03
57GO:0006085: acetyl-CoA biosynthetic process1.64E-03
58GO:0006183: GTP biosynthetic process1.64E-03
59GO:2000122: negative regulation of stomatal complex development1.64E-03
60GO:0016117: carotenoid biosynthetic process1.75E-03
61GO:0006096: glycolytic process1.91E-03
62GO:0031365: N-terminal protein amino acid modification2.09E-03
63GO:0009247: glycolipid biosynthetic process2.09E-03
64GO:0006796: phosphate-containing compound metabolic process2.57E-03
65GO:0010190: cytochrome b6f complex assembly2.57E-03
66GO:0042549: photosystem II stabilization2.57E-03
67GO:0006555: methionine metabolic process2.57E-03
68GO:0016554: cytidine to uridine editing2.57E-03
69GO:0006828: manganese ion transport2.57E-03
70GO:0015979: photosynthesis2.89E-03
71GO:0006458: 'de novo' protein folding3.09E-03
72GO:0009854: oxidative photosynthetic carbon pathway3.09E-03
73GO:0042026: protein refolding3.09E-03
74GO:0009645: response to low light intensity stimulus3.64E-03
75GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway3.64E-03
76GO:0019375: galactolipid biosynthetic process4.23E-03
77GO:0000105: histidine biosynthetic process4.23E-03
78GO:0007155: cell adhesion4.23E-03
79GO:0032544: plastid translation4.84E-03
80GO:0019430: removal of superoxide radicals4.84E-03
81GO:0006783: heme biosynthetic process5.48E-03
82GO:0098656: anion transmembrane transport5.48E-03
83GO:0009051: pentose-phosphate shunt, oxidative branch5.48E-03
84GO:0006810: transport5.71E-03
85GO:0009853: photorespiration5.96E-03
86GO:0016571: histone methylation6.15E-03
87GO:0006779: porphyrin-containing compound biosynthetic process6.15E-03
88GO:0035999: tetrahydrofolate interconversion6.15E-03
89GO:1900865: chloroplast RNA modification6.15E-03
90GO:0042761: very long-chain fatty acid biosynthetic process6.15E-03
91GO:0010380: regulation of chlorophyll biosynthetic process6.15E-03
92GO:0046686: response to cadmium ion6.41E-03
93GO:0006535: cysteine biosynthetic process from serine6.85E-03
94GO:0006631: fatty acid metabolic process7.08E-03
95GO:0043085: positive regulation of catalytic activity7.58E-03
96GO:0018119: peptidyl-cysteine S-nitrosylation7.58E-03
97GO:0010216: maintenance of DNA methylation7.58E-03
98GO:0006816: calcium ion transport7.58E-03
99GO:0009773: photosynthetic electron transport in photosystem I7.58E-03
100GO:0006790: sulfur compound metabolic process8.33E-03
101GO:0006006: glucose metabolic process9.11E-03
102GO:0006094: gluconeogenesis9.11E-03
103GO:0009767: photosynthetic electron transport chain9.11E-03
104GO:0046854: phosphatidylinositol phosphorylation1.07E-02
105GO:0051603: proteolysis involved in cellular protein catabolic process1.07E-02
106GO:0010025: wax biosynthetic process1.16E-02
107GO:0000162: tryptophan biosynthetic process1.16E-02
108GO:0019344: cysteine biosynthetic process1.25E-02
109GO:0048316: seed development1.27E-02
110GO:0007017: microtubule-based process1.34E-02
111GO:0009768: photosynthesis, light harvesting in photosystem I1.34E-02
112GO:0008299: isoprenoid biosynthetic process1.34E-02
113GO:0045454: cell redox homeostasis1.40E-02
114GO:0080092: regulation of pollen tube growth1.53E-02
115GO:0009409: response to cold1.53E-02
116GO:0009411: response to UV1.62E-02
117GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.62E-02
118GO:0019722: calcium-mediated signaling1.72E-02
119GO:0042335: cuticle development1.93E-02
120GO:0000271: polysaccharide biosynthetic process1.93E-02
121GO:0080022: primary root development1.93E-02
122GO:0045489: pectin biosynthetic process2.03E-02
123GO:0007018: microtubule-based movement2.14E-02
124GO:0008654: phospholipid biosynthetic process2.25E-02
125GO:0006508: proteolysis2.36E-02
126GO:0010583: response to cyclopentenone2.47E-02
127GO:0009828: plant-type cell wall loosening2.71E-02
128GO:0007267: cell-cell signaling2.83E-02
129GO:0071805: potassium ion transmembrane transport2.83E-02
130GO:0042128: nitrate assimilation3.32E-02
131GO:0018298: protein-chromophore linkage3.71E-02
132GO:0042254: ribosome biogenesis4.03E-02
133GO:0010119: regulation of stomatal movement4.11E-02
134GO:0016051: carbohydrate biosynthetic process4.39E-02
135GO:0009637: response to blue light4.39E-02
136GO:0006839: mitochondrial transport4.81E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0004822: isoleucine-tRNA ligase activity0.00E+00
3GO:0046905: phytoene synthase activity0.00E+00
4GO:0015229: L-ascorbic acid transporter activity0.00E+00
5GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
6GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0046974: histone methyltransferase activity (H3-K9 specific)0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0004812: aminoacyl-tRNA ligase activity6.49E-06
11GO:0016149: translation release factor activity, codon specific2.19E-05
12GO:0001053: plastid sigma factor activity3.99E-05
13GO:0016987: sigma factor activity3.99E-05
14GO:0005528: FK506 binding6.71E-05
15GO:0051920: peroxiredoxin activity1.29E-04
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.68E-04
17GO:0016209: antioxidant activity2.16E-04
18GO:0004325: ferrochelatase activity2.39E-04
19GO:0004821: histidine-tRNA ligase activity2.39E-04
20GO:0051996: squalene synthase activity2.39E-04
21GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.39E-04
22GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.39E-04
23GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.39E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.39E-04
25GO:0004824: lysine-tRNA ligase activity2.39E-04
26GO:0004807: triose-phosphate isomerase activity2.39E-04
27GO:0004831: tyrosine-tRNA ligase activity2.39E-04
28GO:0003747: translation release factor activity3.23E-04
29GO:0004337: geranyltranstransferase activity3.23E-04
30GO:0004161: dimethylallyltranstransferase activity5.19E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.29E-04
32GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.29E-04
33GO:0050017: L-3-cyanoalanine synthase activity5.29E-04
34GO:0004618: phosphoglycerate kinase activity5.29E-04
35GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.29E-04
36GO:0004047: aminomethyltransferase activity5.29E-04
37GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.29E-04
38GO:0004089: carbonate dehydratase activity6.71E-04
39GO:0031072: heat shock protein binding6.71E-04
40GO:0030267: glyoxylate reductase (NADP) activity8.60E-04
41GO:0010429: methyl-CpNpN binding8.60E-04
42GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
43GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
44GO:0017050: D-erythro-sphingosine kinase activity8.60E-04
45GO:0004827: proline-tRNA ligase activity8.60E-04
46GO:0070330: aromatase activity8.60E-04
47GO:0017150: tRNA dihydrouridine synthase activity8.60E-04
48GO:0010428: methyl-CpNpG binding8.60E-04
49GO:0002161: aminoacyl-tRNA editing activity8.60E-04
50GO:0004148: dihydrolipoyl dehydrogenase activity8.60E-04
51GO:0035250: UDP-galactosyltransferase activity1.23E-03
52GO:0004550: nucleoside diphosphate kinase activity1.23E-03
53GO:0017057: 6-phosphogluconolactonase activity1.23E-03
54GO:0008097: 5S rRNA binding1.23E-03
55GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.23E-03
56GO:0003878: ATP citrate synthase activity1.23E-03
57GO:0004659: prenyltransferase activity1.64E-03
58GO:0005319: lipid transporter activity1.64E-03
59GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.64E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity1.64E-03
61GO:0010385: double-stranded methylated DNA binding1.64E-03
62GO:0018685: alkane 1-monooxygenase activity2.09E-03
63GO:0005471: ATP:ADP antiporter activity2.09E-03
64GO:0008374: O-acyltransferase activity2.09E-03
65GO:0016773: phosphotransferase activity, alcohol group as acceptor2.09E-03
66GO:0051082: unfolded protein binding2.42E-03
67GO:0016462: pyrophosphatase activity2.57E-03
68GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.09E-03
69GO:0004124: cysteine synthase activity3.09E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.09E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.09E-03
72GO:0102391: decanoate--CoA ligase activity3.09E-03
73GO:0004467: long-chain fatty acid-CoA ligase activity3.64E-03
74GO:0004143: diacylglycerol kinase activity3.64E-03
75GO:0016831: carboxy-lyase activity3.64E-03
76GO:0008235: metalloexopeptidase activity3.64E-03
77GO:0004427: inorganic diphosphatase activity3.64E-03
78GO:0004033: aldo-keto reductase (NADP) activity4.23E-03
79GO:0003951: NAD+ kinase activity4.84E-03
80GO:0005384: manganese ion transmembrane transporter activity6.15E-03
81GO:0047617: acyl-CoA hydrolase activity6.15E-03
82GO:0008047: enzyme activator activity6.85E-03
83GO:0005089: Rho guanyl-nucleotide exchange factor activity7.58E-03
84GO:0008327: methyl-CpG binding7.58E-03
85GO:0004177: aminopeptidase activity7.58E-03
86GO:0044183: protein binding involved in protein folding7.58E-03
87GO:0004185: serine-type carboxypeptidase activity7.68E-03
88GO:0051537: 2 iron, 2 sulfur cluster binding8.31E-03
89GO:0000049: tRNA binding8.33E-03
90GO:0005315: inorganic phosphate transmembrane transporter activity9.11E-03
91GO:0015095: magnesium ion transmembrane transporter activity9.11E-03
92GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.04E-02
93GO:0031409: pigment binding1.16E-02
94GO:0004857: enzyme inhibitor activity1.25E-02
95GO:0015079: potassium ion transmembrane transporter activity1.34E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity1.43E-02
97GO:0016746: transferase activity, transferring acyl groups1.52E-02
98GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.53E-02
99GO:0008514: organic anion transmembrane transporter activity1.72E-02
100GO:0003756: protein disulfide isomerase activity1.72E-02
101GO:0003729: mRNA binding1.80E-02
102GO:0003924: GTPase activity1.82E-02
103GO:0019843: rRNA binding1.86E-02
104GO:0050662: coenzyme binding2.14E-02
105GO:0004791: thioredoxin-disulfide reductase activity2.14E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.59E-02
107GO:0005200: structural constituent of cytoskeleton2.83E-02
108GO:0008483: transaminase activity2.83E-02
109GO:0005524: ATP binding3.13E-02
110GO:0016168: chlorophyll binding3.19E-02
111GO:0008236: serine-type peptidase activity3.58E-02
112GO:0000287: magnesium ion binding3.89E-02
113GO:0004601: peroxidase activity3.96E-02
114GO:0004222: metalloendopeptidase activity3.97E-02
115GO:0016491: oxidoreductase activity4.37E-02
116GO:0003746: translation elongation factor activity4.39E-02
117GO:0016740: transferase activity4.76E-02
118GO:0050661: NADP binding4.81E-02
119GO:0042393: histone binding4.81E-02
RankGO TermAdjusted P value
1GO:0031224: intrinsic component of membrane0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast9.90E-45
4GO:0009941: chloroplast envelope2.49E-24
5GO:0009570: chloroplast stroma5.03E-20
6GO:0009535: chloroplast thylakoid membrane1.52E-13
7GO:0009543: chloroplast thylakoid lumen2.00E-11
8GO:0009579: thylakoid6.15E-07
9GO:0009534: chloroplast thylakoid5.91E-06
10GO:0009706: chloroplast inner membrane4.25E-05
11GO:0009654: photosystem II oxygen evolving complex7.83E-05
12GO:0009536: plastid7.99E-05
13GO:0031977: thylakoid lumen1.10E-04
14GO:0019898: extrinsic component of membrane2.29E-04
15GO:0017101: aminoacyl-tRNA synthetase multienzyme complex2.39E-04
16GO:0009344: nitrite reductase complex [NAD(P)H]2.39E-04
17GO:0009782: photosystem I antenna complex2.39E-04
18GO:0043190: ATP-binding cassette (ABC) transporter complex2.39E-04
19GO:0010319: stromule3.53E-04
20GO:0031969: chloroplast membrane4.87E-04
21GO:0030095: chloroplast photosystem II7.56E-04
22GO:0009346: citrate lyase complex1.23E-03
23GO:0055035: plastid thylakoid membrane2.09E-03
24GO:0010287: plastoglobule3.01E-03
25GO:0009295: nucleoid3.21E-03
26GO:0009533: chloroplast stromal thylakoid3.64E-03
27GO:0045298: tubulin complex5.48E-03
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.48E-03
29GO:0009508: plastid chromosome9.11E-03
30GO:0000312: plastid small ribosomal subunit9.92E-03
31GO:0030659: cytoplasmic vesicle membrane9.92E-03
32GO:0005874: microtubule1.06E-02
33GO:0030076: light-harvesting complex1.07E-02
34GO:0005875: microtubule associated complex1.16E-02
35GO:0042651: thylakoid membrane1.34E-02
36GO:0009532: plastid stroma1.43E-02
37GO:0015935: small ribosomal subunit1.43E-02
38GO:0000775: chromosome, centromeric region1.53E-02
39GO:0005871: kinesin complex1.82E-02
40GO:0005739: mitochondrion1.86E-02
41GO:0009523: photosystem II2.25E-02
42GO:0005759: mitochondrial matrix2.33E-02
43GO:0005778: peroxisomal membrane2.83E-02
44GO:0030529: intracellular ribonucleoprotein complex3.07E-02
45GO:0048046: apoplast3.23E-02
46GO:0046658: anchored component of plasma membrane3.39E-02
47GO:0009707: chloroplast outer membrane3.71E-02
48GO:0000325: plant-type vacuole4.11E-02
Gene type



Gene DE type