Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G20810

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0090470: shoot organ boundary specification0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0006642: triglyceride mobilization0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0042493: response to drug0.00E+00
13GO:0042371: vitamin K biosynthetic process0.00E+00
14GO:0006399: tRNA metabolic process0.00E+00
15GO:0034337: RNA folding0.00E+00
16GO:0010027: thylakoid membrane organization1.72E-13
17GO:0015979: photosynthesis5.78E-12
18GO:0009658: chloroplast organization1.83E-10
19GO:0006412: translation1.20E-09
20GO:0032544: plastid translation3.90E-09
21GO:0042549: photosystem II stabilization4.14E-06
22GO:0009735: response to cytokinin6.27E-06
23GO:0042254: ribosome biogenesis6.42E-06
24GO:0010196: nonphotochemical quenching1.13E-05
25GO:0015995: chlorophyll biosynthetic process1.37E-05
26GO:0071482: cellular response to light stimulus2.41E-05
27GO:0090391: granum assembly2.57E-05
28GO:0009773: photosynthetic electron transport in photosystem I7.14E-05
29GO:0010207: photosystem II assembly1.30E-04
30GO:0010236: plastoquinone biosynthetic process1.53E-04
31GO:0045038: protein import into chloroplast thylakoid membrane1.53E-04
32GO:0031365: N-terminal protein amino acid modification1.53E-04
33GO:1901259: chloroplast rRNA processing2.94E-04
34GO:0009772: photosynthetic electron transport in photosystem II3.80E-04
35GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.80E-04
36GO:0071588: hydrogen peroxide mediated signaling pathway4.07E-04
37GO:0006427: histidyl-tRNA aminoacylation4.07E-04
38GO:0043489: RNA stabilization4.07E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process4.07E-04
40GO:0000481: maturation of 5S rRNA4.07E-04
41GO:1904964: positive regulation of phytol biosynthetic process4.07E-04
42GO:0046166: glyceraldehyde-3-phosphate biosynthetic process4.07E-04
43GO:0043686: co-translational protein modification4.07E-04
44GO:0048564: photosystem I assembly4.76E-04
45GO:0006605: protein targeting4.76E-04
46GO:0006353: DNA-templated transcription, termination4.76E-04
47GO:0000373: Group II intron splicing6.96E-04
48GO:0010024: phytochromobilin biosynthetic process8.83E-04
49GO:0010270: photosystem II oxygen evolving complex assembly8.83E-04
50GO:0010115: regulation of abscisic acid biosynthetic process8.83E-04
51GO:1902326: positive regulation of chlorophyll biosynthetic process8.83E-04
52GO:0018026: peptidyl-lysine monomethylation8.83E-04
53GO:0034755: iron ion transmembrane transport8.83E-04
54GO:0009662: etioplast organization8.83E-04
55GO:0001736: establishment of planar polarity8.83E-04
56GO:0006568: tryptophan metabolic process8.83E-04
57GO:0009073: aromatic amino acid family biosynthetic process1.10E-03
58GO:0043085: positive regulation of catalytic activity1.10E-03
59GO:0006352: DNA-templated transcription, initiation1.10E-03
60GO:0016024: CDP-diacylglycerol biosynthetic process1.25E-03
61GO:0006094: gluconeogenesis1.42E-03
62GO:0006006: glucose metabolic process1.42E-03
63GO:0006954: inflammatory response1.43E-03
64GO:0019563: glycerol catabolic process1.43E-03
65GO:0006518: peptide metabolic process1.43E-03
66GO:0010581: regulation of starch biosynthetic process1.43E-03
67GO:0006788: heme oxidation1.43E-03
68GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.43E-03
69GO:0032504: multicellular organism reproduction1.43E-03
70GO:0018298: protein-chromophore linkage1.54E-03
71GO:0019253: reductive pentose-phosphate cycle1.61E-03
72GO:0009152: purine ribonucleotide biosynthetic process2.07E-03
73GO:0046653: tetrahydrofolate metabolic process2.07E-03
74GO:0010239: chloroplast mRNA processing2.07E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch2.07E-03
76GO:0009650: UV protection2.07E-03
77GO:0019048: modulation by virus of host morphology or physiology2.07E-03
78GO:1901332: negative regulation of lateral root development2.07E-03
79GO:0031048: chromatin silencing by small RNA2.07E-03
80GO:0010088: phloem development2.07E-03
81GO:0016556: mRNA modification2.07E-03
82GO:2001141: regulation of RNA biosynthetic process2.07E-03
83GO:0010371: regulation of gibberellin biosynthetic process2.07E-03
84GO:0009768: photosynthesis, light harvesting in photosystem I2.46E-03
85GO:0045727: positive regulation of translation2.78E-03
86GO:0015994: chlorophyll metabolic process2.78E-03
87GO:0051567: histone H3-K9 methylation2.78E-03
88GO:0071483: cellular response to blue light2.78E-03
89GO:0010114: response to red light2.88E-03
90GO:0009451: RNA modification3.02E-03
91GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.22E-03
92GO:0009306: protein secretion3.50E-03
93GO:0080110: sporopollenin biosynthetic process3.56E-03
94GO:0006564: L-serine biosynthetic process3.56E-03
95GO:0048497: maintenance of floral organ identity3.56E-03
96GO:0006461: protein complex assembly3.56E-03
97GO:0080022: primary root development4.11E-03
98GO:0000413: protein peptidyl-prolyl isomerization4.11E-03
99GO:0000470: maturation of LSU-rRNA4.41E-03
100GO:0009913: epidermal cell differentiation4.41E-03
101GO:0006655: phosphatidylglycerol biosynthetic process4.41E-03
102GO:0042793: transcription from plastid promoter4.41E-03
103GO:0010190: cytochrome b6f complex assembly4.41E-03
104GO:0006828: manganese ion transport4.41E-03
105GO:0016458: gene silencing4.41E-03
106GO:0006561: proline biosynthetic process4.41E-03
107GO:0006751: glutathione catabolic process4.41E-03
108GO:0006096: glycolytic process5.21E-03
109GO:0006457: protein folding5.31E-03
110GO:0042372: phylloquinone biosynthetic process5.31E-03
111GO:0009082: branched-chain amino acid biosynthetic process5.31E-03
112GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.31E-03
113GO:0017148: negative regulation of translation5.31E-03
114GO:0009099: valine biosynthetic process5.31E-03
115GO:0010189: vitamin E biosynthetic process5.31E-03
116GO:0010019: chloroplast-nucleus signaling pathway5.31E-03
117GO:0009645: response to low light intensity stimulus6.28E-03
118GO:0006400: tRNA modification6.28E-03
119GO:0009828: plant-type cell wall loosening6.64E-03
120GO:0045292: mRNA cis splicing, via spliceosome7.30E-03
121GO:0042255: ribosome assembly7.30E-03
122GO:0032508: DNA duplex unwinding7.30E-03
123GO:0019430: removal of superoxide radicals8.38E-03
124GO:0009097: isoleucine biosynthetic process8.38E-03
125GO:0009657: plastid organization8.38E-03
126GO:0009051: pentose-phosphate shunt, oxidative branch9.51E-03
127GO:0010206: photosystem II repair9.51E-03
128GO:0006098: pentose-phosphate shunt9.51E-03
129GO:0042744: hydrogen peroxide catabolic process1.04E-02
130GO:0045454: cell redox homeostasis1.04E-02
131GO:0010205: photoinhibition1.07E-02
132GO:0006779: porphyrin-containing compound biosynthetic process1.07E-02
133GO:0009098: leucine biosynthetic process1.07E-02
134GO:0010380: regulation of chlorophyll biosynthetic process1.07E-02
135GO:0010311: lateral root formation1.09E-02
136GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
137GO:0009688: abscisic acid biosynthetic process1.19E-02
138GO:0030422: production of siRNA involved in RNA interference1.19E-02
139GO:0048829: root cap development1.19E-02
140GO:0006949: syncytium formation1.19E-02
141GO:0009631: cold acclimation1.20E-02
142GO:0006816: calcium ion transport1.32E-02
143GO:0008285: negative regulation of cell proliferation1.32E-02
144GO:0006879: cellular iron ion homeostasis1.32E-02
145GO:0006415: translational termination1.32E-02
146GO:0009750: response to fructose1.32E-02
147GO:0048765: root hair cell differentiation1.32E-02
148GO:0009637: response to blue light1.32E-02
149GO:0032259: methylation1.33E-02
150GO:0034599: cellular response to oxidative stress1.38E-02
151GO:0010628: positive regulation of gene expression1.59E-02
152GO:0010143: cutin biosynthetic process1.74E-02
153GO:0090351: seedling development1.88E-02
154GO:0006636: unsaturated fatty acid biosynthetic process2.04E-02
155GO:0009664: plant-type cell wall organization2.14E-02
156GO:0000027: ribosomal large subunit assembly2.19E-02
157GO:0007010: cytoskeleton organization2.19E-02
158GO:0006364: rRNA processing2.30E-02
159GO:0006418: tRNA aminoacylation for protein translation2.35E-02
160GO:0009695: jasmonic acid biosynthetic process2.35E-02
161GO:0010073: meristem maintenance2.35E-02
162GO:0031408: oxylipin biosynthetic process2.51E-02
163GO:0006306: DNA methylation2.51E-02
164GO:0003333: amino acid transmembrane transport2.51E-02
165GO:0009793: embryo development ending in seed dormancy2.59E-02
166GO:0016226: iron-sulfur cluster assembly2.68E-02
167GO:0035428: hexose transmembrane transport2.68E-02
168GO:0009411: response to UV2.85E-02
169GO:0010227: floral organ abscission2.85E-02
170GO:0010584: pollen exine formation3.03E-02
171GO:0016117: carotenoid biosynthetic process3.21E-02
172GO:0042335: cuticle development3.39E-02
173GO:0008033: tRNA processing3.39E-02
174GO:0009958: positive gravitropism3.58E-02
175GO:0006662: glycerol ether metabolic process3.58E-02
176GO:0010182: sugar mediated signaling pathway3.58E-02
177GO:0046323: glucose import3.58E-02
178GO:0006342: chromatin silencing3.58E-02
179GO:0007018: microtubule-based movement3.77E-02
180GO:0006814: sodium ion transport3.77E-02
181GO:0048825: cotyledon development3.96E-02
182GO:0000302: response to reactive oxygen species4.15E-02
183GO:0016032: viral process4.35E-02
184GO:0032502: developmental process4.35E-02
185GO:0030163: protein catabolic process4.55E-02
186GO:0009790: embryo development4.76E-02
187GO:0055114: oxidation-reduction process4.85E-02
188GO:0071805: potassium ion transmembrane transport4.97E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0046608: carotenoid isomerase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0010301: xanthoxin dehydrogenase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
11GO:0019843: rRNA binding6.19E-20
12GO:0003735: structural constituent of ribosome4.17E-09
13GO:0016851: magnesium chelatase activity3.35E-07
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.81E-07
15GO:0003723: RNA binding4.85E-05
16GO:0043023: ribosomal large subunit binding5.61E-05
17GO:0016987: sigma factor activity9.87E-05
18GO:0004659: prenyltransferase activity9.87E-05
19GO:0001053: plastid sigma factor activity9.87E-05
20GO:0008266: poly(U) RNA binding1.30E-04
21GO:0005528: FK506 binding2.09E-04
22GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.07E-04
23GO:0030794: (S)-coclaurine-N-methyltransferase activity4.07E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity4.07E-04
25GO:0004807: triose-phosphate isomerase activity4.07E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.07E-04
27GO:0004821: histidine-tRNA ligase activity4.07E-04
28GO:0004321: fatty-acyl-CoA synthase activity4.07E-04
29GO:0005080: protein kinase C binding4.07E-04
30GO:0042586: peptide deformylase activity4.07E-04
31GO:0045485: omega-6 fatty acid desaturase activity4.07E-04
32GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.07E-04
33GO:0004617: phosphoglycerate dehydrogenase activity8.83E-04
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.83E-04
35GO:0016630: protochlorophyllide reductase activity8.83E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.83E-04
37GO:0047746: chlorophyllase activity8.83E-04
38GO:0003839: gamma-glutamylcyclotransferase activity8.83E-04
39GO:0008047: enzyme activator activity9.55E-04
40GO:0016168: chlorophyll binding1.18E-03
41GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.43E-03
42GO:0002161: aminoacyl-tRNA editing activity1.43E-03
43GO:0004751: ribose-5-phosphate isomerase activity1.43E-03
44GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.43E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.43E-03
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.43E-03
47GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.43E-03
48GO:0031409: pigment binding2.01E-03
49GO:0008508: bile acid:sodium symporter activity2.07E-03
50GO:0052655: L-valine transaminase activity2.07E-03
51GO:0001872: (1->3)-beta-D-glucan binding2.07E-03
52GO:0016149: translation release factor activity, codon specific2.07E-03
53GO:0052656: L-isoleucine transaminase activity2.07E-03
54GO:0035197: siRNA binding2.07E-03
55GO:0052654: L-leucine transaminase activity2.07E-03
56GO:0008097: 5S rRNA binding2.07E-03
57GO:0015079: potassium ion transmembrane transporter activity2.46E-03
58GO:0010011: auxin binding2.78E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity2.78E-03
60GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.78E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity2.78E-03
62GO:0010328: auxin influx transmembrane transporter activity2.78E-03
63GO:0004084: branched-chain-amino-acid transaminase activity2.78E-03
64GO:0043495: protein anchor2.78E-03
65GO:0004392: heme oxygenase (decyclizing) activity2.78E-03
66GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.78E-03
67GO:0016279: protein-lysine N-methyltransferase activity2.78E-03
68GO:0003959: NADPH dehydrogenase activity3.56E-03
69GO:0016773: phosphotransferase activity, alcohol group as acceptor3.56E-03
70GO:0004040: amidase activity3.56E-03
71GO:0003729: mRNA binding3.75E-03
72GO:0004332: fructose-bisphosphate aldolase activity4.41E-03
73GO:0004130: cytochrome-c peroxidase activity4.41E-03
74GO:0016688: L-ascorbate peroxidase activity4.41E-03
75GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.41E-03
76GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.41E-03
77GO:0004791: thioredoxin-disulfide reductase activity4.76E-03
78GO:0050662: coenzyme binding4.76E-03
79GO:0051920: peroxiredoxin activity5.31E-03
80GO:0008168: methyltransferase activity5.36E-03
81GO:0016788: hydrolase activity, acting on ester bonds5.85E-03
82GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.23E-03
83GO:0008235: metalloexopeptidase activity6.28E-03
84GO:0019899: enzyme binding6.28E-03
85GO:0016209: antioxidant activity7.30E-03
86GO:0008312: 7S RNA binding7.30E-03
87GO:0052747: sinapyl alcohol dehydrogenase activity7.30E-03
88GO:0043022: ribosome binding7.30E-03
89GO:0004033: aldo-keto reductase (NADP) activity7.30E-03
90GO:0016491: oxidoreductase activity7.91E-03
91GO:0016207: 4-coumarate-CoA ligase activity9.51E-03
92GO:0003747: translation release factor activity9.51E-03
93GO:0008236: serine-type peptidase activity9.85E-03
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.04E-02
95GO:0005381: iron ion transmembrane transporter activity1.07E-02
96GO:0005384: manganese ion transmembrane transporter activity1.07E-02
97GO:0047617: acyl-CoA hydrolase activity1.07E-02
98GO:0004222: metalloendopeptidase activity1.14E-02
99GO:0015386: potassium:proton antiporter activity1.32E-02
100GO:0004177: aminopeptidase activity1.32E-02
101GO:0004521: endoribonuclease activity1.46E-02
102GO:0000049: tRNA binding1.46E-02
103GO:0045551: cinnamyl-alcohol dehydrogenase activity1.46E-02
104GO:0050661: NADP binding1.50E-02
105GO:0008081: phosphoric diester hydrolase activity1.59E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity1.59E-02
107GO:0015095: magnesium ion transmembrane transporter activity1.59E-02
108GO:0031072: heat shock protein binding1.59E-02
109GO:0004519: endonuclease activity1.62E-02
110GO:0046872: metal ion binding1.77E-02
111GO:0043621: protein self-association1.84E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding1.84E-02
113GO:0051287: NAD binding2.06E-02
114GO:0051536: iron-sulfur cluster binding2.19E-02
115GO:0016787: hydrolase activity2.21E-02
116GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.30E-02
117GO:0004601: peroxidase activity2.31E-02
118GO:0051087: chaperone binding2.35E-02
119GO:0022891: substrate-specific transmembrane transporter activity2.85E-02
120GO:0003727: single-stranded RNA binding3.03E-02
121GO:0004812: aminoacyl-tRNA ligase activity3.21E-02
122GO:0047134: protein-disulfide reductase activity3.21E-02
123GO:0016746: transferase activity, transferring acyl groups3.37E-02
124GO:0008080: N-acetyltransferase activity3.58E-02
125GO:0005355: glucose transmembrane transporter activity3.77E-02
126GO:0042803: protein homodimerization activity4.00E-02
127GO:0003824: catalytic activity4.09E-02
128GO:0005215: transporter activity4.14E-02
129GO:0004518: nuclease activity4.35E-02
130GO:0016791: phosphatase activity4.76E-02
131GO:0008237: metallopeptidase activity4.97E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast3.89E-86
3GO:0009570: chloroplast stroma5.16E-50
4GO:0009941: chloroplast envelope7.91E-39
5GO:0009535: chloroplast thylakoid membrane1.41E-29
6GO:0009579: thylakoid4.16E-23
7GO:0009534: chloroplast thylakoid3.18E-19
8GO:0009543: chloroplast thylakoid lumen7.91E-17
9GO:0031977: thylakoid lumen4.57E-15
10GO:0005840: ribosome2.72E-11
11GO:0010007: magnesium chelatase complex6.95E-08
12GO:0031969: chloroplast membrane1.20E-07
13GO:0009654: photosystem II oxygen evolving complex1.29E-05
14GO:0019898: extrinsic component of membrane5.83E-05
15GO:0030529: intracellular ribonucleoprotein complex1.32E-04
16GO:0042651: thylakoid membrane2.40E-04
17GO:0009533: chloroplast stromal thylakoid3.80E-04
18GO:0009782: photosystem I antenna complex4.07E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.07E-04
20GO:0009547: plastid ribosome4.07E-04
21GO:0016020: membrane4.81E-04
22GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.80E-04
23GO:0009523: photosystem II6.35E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.96E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex8.83E-04
26GO:0080085: signal recognition particle, chloroplast targeting8.83E-04
27GO:0032040: small-subunit processome1.25E-03
28GO:0030095: chloroplast photosystem II1.61E-03
29GO:0030076: light-harvesting complex1.80E-03
30GO:0005719: nuclear euchromatin2.07E-03
31GO:0009536: plastid2.37E-03
32GO:0015935: small ribosomal subunit2.70E-03
33GO:0046658: anchored component of plasma membrane4.48E-03
34GO:0009986: cell surface6.28E-03
35GO:0009706: chloroplast inner membrane6.60E-03
36GO:0009295: nucleoid7.05E-03
37GO:0010287: plastoglobule8.21E-03
38GO:0015030: Cajal body1.07E-02
39GO:0015934: large ribosomal subunit1.20E-02
40GO:0000311: plastid large ribosomal subunit1.46E-02
41GO:0009508: plastid chromosome1.59E-02
42GO:0043231: intracellular membrane-bounded organelle1.65E-02
43GO:0000312: plastid small ribosomal subunit1.74E-02
44GO:0005871: kinesin complex3.21E-02
45GO:0022625: cytosolic large ribosomal subunit3.22E-02
46GO:0005618: cell wall3.52E-02
47GO:0009522: photosystem I3.77E-02
48GO:0010319: stromule4.97E-02
Gene type



Gene DE type