co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G20640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030644: cellular chloride ion homeostasis	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
4	GO:0018298: protein-chromophore linkage	5.61E-08
5	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-07
6	GO:0007623: circadian rhythm	2.04E-07
7	GO:0009645: response to low light intensity stimulus	2.34E-07
8	GO:0009637: response to blue light	4.75E-06
9	GO:0010114: response to red light	8.19E-06
10	GO:0009644: response to high light intensity	9.67E-06
11	GO:0015812: gamma-aminobutyric acid transport	8.61E-05
12	GO:0032958: inositol phosphate biosynthetic process	8.61E-05
13	GO:0010362: negative regulation of anion channel activity by blue light	8.61E-05
14	GO:0010218: response to far red light	9.77E-05
15	GO:1902884: positive regulation of response to oxidative stress	2.04E-04
16	GO:0010155: regulation of proton transport	2.04E-04
17	GO:0006883: cellular sodium ion homeostasis	2.04E-04
18	GO:0048255: mRNA stabilization	2.04E-04
19	GO:0009416: response to light stimulus	2.05E-04
20	GO:0035556: intracellular signal transduction	2.28E-04
21	GO:0009409: response to cold	2.77E-04
22	GO:0003333: amino acid transmembrane transport	3.20E-04
23	GO:0015979: photosynthesis	3.33E-04
24	GO:1901562: response to paraquat	3.42E-04
25	GO:0051176: positive regulation of sulfur metabolic process	3.42E-04
26	GO:1902448: positive regulation of shade avoidance	3.42E-04
27	GO:0010017: red or far-red light signaling pathway	3.51E-04
28	GO:1901332: negative regulation of lateral root development	4.92E-04
29	GO:0006020: inositol metabolic process	4.92E-04
30	GO:0006351: transcription, DNA-templated	6.19E-04
31	GO:1901002: positive regulation of response to salt stress	6.55E-04
32	GO:0015846: polyamine transport	6.55E-04
33	GO:0030104: water homeostasis	6.55E-04
34	GO:0009765: photosynthesis, light harvesting	6.55E-04
35	GO:2000306: positive regulation of photomorphogenesis	6.55E-04
36	GO:0010600: regulation of auxin biosynthetic process	6.55E-04
37	GO:0010286: heat acclimation	8.18E-04
38	GO:0009904: chloroplast accumulation movement	8.29E-04
39	GO:0016123: xanthophyll biosynthetic process	8.29E-04
40	GO:0002238: response to molecule of fungal origin	1.01E-03
41	GO:0045962: positive regulation of development, heterochronic	1.01E-03
42	GO:0010468: regulation of gene expression	1.02E-03
43	GO:0006355: regulation of transcription, DNA-templated	1.11E-03
44	GO:0009817: defense response to fungus, incompatible interaction	1.18E-03
45	GO:0009903: chloroplast avoidance movement	1.20E-03
46	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.20E-03
47	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.20E-03
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.20E-03
49	GO:0000160: phosphorelay signal transduction system	1.23E-03
50	GO:0010044: response to aluminum ion	1.41E-03
51	GO:0010161: red light signaling pathway	1.41E-03
52	GO:0009769: photosynthesis, light harvesting in photosystem II	1.41E-03
53	GO:0010078: maintenance of root meristem identity	1.63E-03
54	GO:0009704: de-etiolation	1.63E-03
55	GO:0010928: regulation of auxin mediated signaling pathway	1.63E-03
56	GO:0042542: response to hydrogen peroxide	1.82E-03
57	GO:0080167: response to karrikin	1.84E-03
58	GO:0010099: regulation of photomorphogenesis	1.86E-03
59	GO:0009827: plant-type cell wall modification	1.86E-03
60	GO:0044550: secondary metabolite biosynthetic process	2.04E-03
61	GO:0008643: carbohydrate transport	2.04E-03
62	GO:0090333: regulation of stomatal closure	2.10E-03
63	GO:0000165: MAPK cascade	2.28E-03
64	GO:0008356: asymmetric cell division	2.35E-03
65	GO:0009638: phototropism	2.35E-03
66	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.35E-03
67	GO:0055062: phosphate ion homeostasis	2.61E-03
68	GO:0009688: abscisic acid biosynthetic process	2.61E-03
69	GO:0009641: shade avoidance	2.61E-03
70	GO:0010162: seed dormancy process	2.61E-03
71	GO:0046856: phosphatidylinositol dephosphorylation	2.87E-03
72	GO:0009408: response to heat	3.01E-03
73	GO:0016925: protein sumoylation	3.15E-03
74	GO:0050826: response to freezing	3.43E-03
75	GO:0018107: peptidyl-threonine phosphorylation	3.43E-03
76	GO:0009718: anthocyanin-containing compound biosynthetic process	3.43E-03
77	GO:0009785: blue light signaling pathway	3.43E-03
78	GO:0009266: response to temperature stimulus	3.73E-03
79	GO:0090351: seedling development	4.03E-03
80	GO:0048511: rhythmic process	5.32E-03
81	GO:0010431: seed maturation	5.32E-03
82	GO:0009269: response to desiccation	5.32E-03
83	GO:0071215: cellular response to abscisic acid stimulus	6.01E-03
84	GO:0045492: xylan biosynthetic process	6.36E-03
85	GO:0010182: sugar mediated signaling pathway	7.48E-03
86	GO:0006814: sodium ion transport	7.87E-03
87	GO:0000302: response to reactive oxygen species	8.66E-03
88	GO:0055114: oxidation-reduction process	9.36E-03
89	GO:1901657: glycosyl compound metabolic process	9.48E-03
90	GO:0009737: response to abscisic acid	1.08E-02
91	GO:0009723: response to ethylene	1.11E-02
92	GO:0048573: photoperiodism, flowering	1.26E-02
93	GO:0015995: chlorophyll biosynthetic process	1.26E-02
94	GO:0009813: flavonoid biosynthetic process	1.40E-02
95	GO:0009414: response to water deprivation	1.48E-02
96	GO:0010119: regulation of stomatal movement	1.50E-02
97	GO:0009631: cold acclimation	1.50E-02
98	GO:0006865: amino acid transport	1.55E-02
99	GO:0006629: lipid metabolic process	1.76E-02
100	GO:0009753: response to jasmonic acid	1.89E-02
101	GO:0051707: response to other organism	1.92E-02
102	GO:0009640: photomorphogenesis	1.92E-02
103	GO:0009965: leaf morphogenesis	2.08E-02
104	GO:0042538: hyperosmotic salinity response	2.25E-02
105	GO:0009809: lignin biosynthetic process	2.37E-02
106	GO:0009585: red, far-red light phototransduction	2.37E-02
107	GO:0051603: proteolysis involved in cellular protein catabolic process	2.43E-02
108	GO:0009909: regulation of flower development	2.55E-02
109	GO:0009735: response to cytokinin	2.85E-02
110	GO:0009624: response to nematode	3.04E-02
111	GO:0018105: peptidyl-serine phosphorylation	3.11E-02
112	GO:0007165: signal transduction	3.81E-02
113	GO:0055085: transmembrane transport	3.95E-02
114	GO:0006457: protein folding	4.03E-02
115	GO:0006511: ubiquitin-dependent protein catabolic process	4.23E-02
116	GO:0010228: vegetative to reproductive phase transition of meristem	4.64E-02
117	GO:0009739: response to gibberellin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
5	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
6	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
7	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0031409: pigment binding	6.26E-08
10	GO:0016168: chlorophyll binding	1.77E-06
11	GO:0004707: MAP kinase activity	9.63E-06
12	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	8.61E-05
13	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	8.61E-05
14	GO:0000829: inositol heptakisphosphate kinase activity	8.61E-05
15	GO:0080079: cellobiose glucosidase activity	8.61E-05
16	GO:0017091: AU-rich element binding	8.61E-05
17	GO:0000828: inositol hexakisphosphate kinase activity	8.61E-05
18	GO:0015180: L-alanine transmembrane transporter activity	2.04E-04
19	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.04E-04
20	GO:0019789: SUMO transferase activity	4.92E-04
21	GO:0009882: blue light photoreceptor activity	4.92E-04
22	GO:0015189: L-lysine transmembrane transporter activity	4.92E-04
23	GO:0015181: arginine transmembrane transporter activity	4.92E-04
24	GO:0015203: polyamine transmembrane transporter activity	4.92E-04
25	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.68E-04
26	GO:0005313: L-glutamate transmembrane transporter activity	6.55E-04
27	GO:0015297: antiporter activity	7.74E-04
28	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	8.29E-04
29	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.01E-03
30	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.38E-03
31	GO:0016621: cinnamoyl-CoA reductase activity	1.41E-03
32	GO:0004497: monooxygenase activity	1.84E-03
33	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	1.86E-03
34	GO:0000989: transcription factor activity, transcription factor binding	2.10E-03
35	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.10E-03
36	GO:0071949: FAD binding	2.10E-03
37	GO:0015293: symporter activity	2.12E-03
38	GO:0015174: basic amino acid transmembrane transporter activity	2.35E-03
39	GO:0046872: metal ion binding	2.44E-03
40	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.61E-03
41	GO:0015171: amino acid transmembrane transporter activity	2.80E-03
42	GO:0047372: acylglycerol lipase activity	2.87E-03
43	GO:0005515: protein binding	3.01E-03
44	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.15E-03
45	GO:0004022: alcohol dehydrogenase (NAD) activity	3.43E-03
46	GO:0005315: inorganic phosphate transmembrane transporter activity	3.43E-03
47	GO:0000155: phosphorelay sensor kinase activity	3.43E-03
48	GO:0004565: beta-galactosidase activity	3.43E-03
49	GO:0003712: transcription cofactor activity	4.03E-03
50	GO:0003677: DNA binding	5.34E-03
51	GO:0005351: sugar:proton symporter activity	6.04E-03
52	GO:0008514: organic anion transmembrane transporter activity	6.36E-03
53	GO:0050662: coenzyme binding	7.87E-03
54	GO:0010181: FMN binding	7.87E-03
55	GO:0000156: phosphorelay response regulator activity	9.48E-03
56	GO:0019825: oxygen binding	9.74E-03
57	GO:0102483: scopolin beta-glucosidase activity	1.26E-02
58	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.45E-02
59	GO:0008270: zinc ion binding	1.46E-02
60	GO:0005506: iron ion binding	1.49E-02
61	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.54E-02
62	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.60E-02
63	GO:0008422: beta-glucosidase activity	1.70E-02
64	GO:0004842: ubiquitin-protein transferase activity	2.29E-02
65	GO:0031625: ubiquitin protein ligase binding	2.55E-02
66	GO:0045735: nutrient reservoir activity	2.67E-02
67	GO:0020037: heme binding	2.71E-02
68	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.85E-02
69	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.85E-02
70	GO:0016874: ligase activity	2.92E-02
71	GO:0022857: transmembrane transporter activity	2.92E-02
72	GO:0004674: protein serine/threonine kinase activity	3.74E-02
73	GO:0016301: kinase activity	3.83E-02
74	GO:0043565: sequence-specific DNA binding	3.95E-02
75	GO:0015144: carbohydrate transmembrane transporter activity	4.06E-02
76	GO:0008194: UDP-glycosyltransferase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	4.88E-07
2	GO:0010287: plastoglobule	1.99E-06
3	GO:0030076: light-harvesting complex	4.69E-06
4	GO:0009898: cytoplasmic side of plasma membrane	6.94E-06
5	GO:0009523: photosystem II	2.81E-05
6	GO:0009535: chloroplast thylakoid membrane	2.91E-05
7	GO:0009579: thylakoid	3.85E-05
8	GO:0009941: chloroplast envelope	2.61E-04
9	GO:0009534: chloroplast thylakoid	2.95E-04
10	GO:0032586: protein storage vacuole membrane	6.55E-04
11	GO:0009517: PSII associated light-harvesting complex II	6.55E-04
12	GO:0009986: cell surface	1.41E-03
13	GO:0009538: photosystem I reaction center	1.63E-03
14	GO:0000326: protein storage vacuole	1.86E-03
15	GO:0010494: cytoplasmic stress granule	2.10E-03
16	GO:0005634: nucleus	5.03E-03
17	GO:0000932: P-body	1.12E-02
18	GO:0031969: chloroplast membrane	1.19E-02
19	GO:0000151: ubiquitin ligase complex	1.35E-02
20	GO:0005773: vacuole	1.37E-02
21	GO:0016020: membrane	1.64E-02
22	GO:0009507: chloroplast	2.23E-02
23	GO:0031966: mitochondrial membrane	2.25E-02
24	GO:0005887: integral component of plasma membrane	2.39E-02
25	GO:0016021: integral component of membrane	2.64E-02
26	GO:0016607: nuclear speck	2.73E-02
27	GO:0009706: chloroplast inner membrane	3.04E-02
28	GO:0005737: cytoplasm	4.79E-02
29	GO:0005802: trans-Golgi network	4.97E-02