co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G20190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0090391: granum assembly	2.08E-06
4	GO:0015995: chlorophyll biosynthetic process	3.74E-06
5	GO:0051513: regulation of monopolar cell growth	4.93E-06
6	GO:0010206: photosystem II repair	9.24E-05
7	GO:0045490: pectin catabolic process	1.33E-04
8	GO:0009926: auxin polar transport	2.37E-04
9	GO:0006898: receptor-mediated endocytosis	2.40E-04
10	GO:0010541: acropetal auxin transport	2.40E-04
11	GO:0001736: establishment of planar polarity	2.40E-04
12	GO:0009664: plant-type cell wall organization	3.22E-04
13	GO:0010160: formation of animal organ boundary	3.99E-04
14	GO:0016045: detection of bacterium	3.99E-04
15	GO:0010359: regulation of anion channel activity	3.99E-04
16	GO:0080055: low-affinity nitrate transport	3.99E-04
17	GO:0045493: xylan catabolic process	3.99E-04
18	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.81E-04
19	GO:0015979: photosynthesis	4.82E-04
20	GO:0009624: response to nematode	5.54E-04
21	GO:0009650: UV protection	5.73E-04
22	GO:1901332: negative regulation of lateral root development	5.73E-04
23	GO:0080170: hydrogen peroxide transmembrane transport	5.73E-04
24	GO:0043481: anthocyanin accumulation in tissues in response to UV light	5.73E-04
25	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.73E-04
26	GO:0034220: ion transmembrane transport	6.09E-04
27	GO:0009958: positive gravitropism	6.55E-04
28	GO:0030104: water homeostasis	7.62E-04
29	GO:0009828: plant-type cell wall loosening	9.62E-04
30	GO:0010438: cellular response to sulfur starvation	9.62E-04
31	GO:0009913: epidermal cell differentiation	1.17E-03
32	GO:0060918: auxin transport	1.17E-03
33	GO:0009759: indole glucosinolate biosynthetic process	1.17E-03
34	GO:0009734: auxin-activated signaling pathway	1.19E-03
35	GO:0009627: systemic acquired resistance	1.26E-03
36	GO:0010411: xyloglucan metabolic process	1.33E-03
37	GO:0009942: longitudinal axis specification	1.40E-03
38	GO:0010311: lateral root formation	1.54E-03
39	GO:0010196: nonphotochemical quenching	1.65E-03
40	GO:0007389: pattern specification process	2.17E-03
41	GO:0006783: heme biosynthetic process	2.45E-03
42	GO:0009245: lipid A biosynthetic process	2.45E-03
43	GO:0080167: response to karrikin	2.47E-03
44	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-03
45	GO:0009638: phototropism	2.74E-03
46	GO:0006535: cysteine biosynthetic process from serine	3.05E-03
47	GO:0048829: root cap development	3.05E-03
48	GO:0006949: syncytium formation	3.05E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	3.05E-03
50	GO:1903507: negative regulation of nucleic acid-templated transcription	3.36E-03
51	GO:0048765: root hair cell differentiation	3.36E-03
52	GO:0010015: root morphogenesis	3.36E-03
53	GO:0009773: photosynthetic electron transport in photosystem I	3.36E-03
54	GO:0052544: defense response by callose deposition in cell wall	3.36E-03
55	GO:0008361: regulation of cell size	3.69E-03
56	GO:0002213: defense response to insect	3.69E-03
57	GO:0016024: CDP-diacylglycerol biosynthetic process	3.69E-03
58	GO:0009785: blue light signaling pathway	4.02E-03
59	GO:0010540: basipetal auxin transport	4.37E-03
60	GO:0010143: cutin biosynthetic process	4.37E-03
61	GO:0010030: positive regulation of seed germination	4.72E-03
62	GO:0009742: brassinosteroid mediated signaling pathway	4.80E-03
63	GO:0071555: cell wall organization	4.91E-03
64	GO:0006833: water transport	5.09E-03
65	GO:0000162: tryptophan biosynthetic process	5.09E-03
66	GO:0051017: actin filament bundle assembly	5.46E-03
67	GO:0019344: cysteine biosynthetic process	5.46E-03
68	GO:0007017: microtubule-based process	5.85E-03
69	GO:0009733: response to auxin	5.85E-03
70	GO:0003333: amino acid transmembrane transport	6.24E-03
71	GO:0016998: cell wall macromolecule catabolic process	6.24E-03
72	GO:0048511: rhythmic process	6.24E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.64E-03
74	GO:0009411: response to UV	7.06E-03
75	GO:0009735: response to cytokinin	7.48E-03
76	GO:0048443: stamen development	7.48E-03
77	GO:0006284: base-excision repair	7.48E-03
78	GO:0007623: circadian rhythm	7.80E-03
79	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.91E-03
80	GO:0042335: cuticle development	8.35E-03
81	GO:0080022: primary root development	8.35E-03
82	GO:0042631: cellular response to water deprivation	8.35E-03
83	GO:0009416: response to light stimulus	8.38E-03
84	GO:0007166: cell surface receptor signaling pathway	8.93E-03
85	GO:0042752: regulation of circadian rhythm	9.26E-03
86	GO:0048825: cotyledon development	9.73E-03
87	GO:0000302: response to reactive oxygen species	1.02E-02
88	GO:0010583: response to cyclopentenone	1.07E-02
89	GO:0016032: viral process	1.07E-02
90	GO:0030163: protein catabolic process	1.12E-02
91	GO:0055085: transmembrane transport	1.13E-02
92	GO:0009826: unidimensional cell growth	1.16E-02
93	GO:0009639: response to red or far red light	1.17E-02
94	GO:0009567: double fertilization forming a zygote and endosperm	1.17E-02
95	GO:0010252: auxin homeostasis	1.17E-02
96	GO:0010027: thylakoid membrane organization	1.32E-02
97	GO:0006468: protein phosphorylation	1.40E-02
98	GO:0010218: response to far red light	1.71E-02
99	GO:0048527: lateral root development	1.77E-02
100	GO:0045892: negative regulation of transcription, DNA-templated	1.83E-02
101	GO:0006865: amino acid transport	1.83E-02
102	GO:0009637: response to blue light	1.89E-02
103	GO:0034599: cellular response to oxidative stress	1.95E-02
104	GO:0030001: metal ion transport	2.07E-02
105	GO:0016042: lipid catabolic process	2.16E-02
106	GO:0006281: DNA repair	2.22E-02
107	GO:0009640: photomorphogenesis	2.26E-02
108	GO:0010114: response to red light	2.26E-02
109	GO:0048364: root development	2.32E-02
110	GO:0042546: cell wall biogenesis	2.33E-02
111	GO:0031347: regulation of defense response	2.59E-02
112	GO:0006857: oligopeptide transport	2.94E-02
113	GO:0006810: transport	3.31E-02
114	GO:0042545: cell wall modification	3.52E-02
115	GO:0046686: response to cadmium ion	3.56E-02
116	GO:0009845: seed germination	4.46E-02
117	GO:0042744: hydrogen peroxide catabolic process	4.62E-02
118	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0016851: magnesium chelatase activity	4.93E-06
5	GO:0030570: pectate lyase activity	1.92E-05
6	GO:0016829: lyase activity	8.61E-05
7	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.02E-04
8	GO:0004853: uroporphyrinogen decarboxylase activity	1.02E-04
9	GO:0010329: auxin efflux transmembrane transporter activity	2.09E-04
10	GO:0090729: toxin activity	3.99E-04
11	GO:0080054: low-affinity nitrate transmembrane transporter activity	3.99E-04
12	GO:0009044: xylan 1,4-beta-xylosidase activity	7.62E-04
13	GO:0046556: alpha-L-arabinofuranosidase activity	7.62E-04
14	GO:0010011: auxin binding	7.62E-04
15	GO:0010328: auxin influx transmembrane transporter activity	7.62E-04
16	GO:0008725: DNA-3-methyladenine glycosylase activity	9.62E-04
17	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.00E-03
18	GO:0015250: water channel activity	1.14E-03
19	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.17E-03
20	GO:0031177: phosphopantetheine binding	1.17E-03
21	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.17E-03
22	GO:0004130: cytochrome-c peroxidase activity	1.17E-03
23	GO:0000035: acyl binding	1.40E-03
24	GO:0004124: cysteine synthase activity	1.40E-03
25	GO:0016832: aldehyde-lyase activity	1.40E-03
26	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.90E-03
27	GO:0009672: auxin:proton symporter activity	2.74E-03
28	GO:0008794: arsenate reductase (glutaredoxin) activity	3.36E-03
29	GO:0031072: heat shock protein binding	4.02E-03
30	GO:0004650: polygalacturonase activity	4.14E-03
31	GO:0003714: transcription corepressor activity	5.46E-03
32	GO:0004252: serine-type endopeptidase activity	6.28E-03
33	GO:0003756: protein disulfide isomerase activity	7.48E-03
34	GO:0016301: kinase activity	9.92E-03
35	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.02E-02
36	GO:0004518: nuclease activity	1.07E-02
37	GO:0051015: actin filament binding	1.12E-02
38	GO:0016791: phosphatase activity	1.17E-02
39	GO:0005200: structural constituent of cytoskeleton	1.22E-02
40	GO:0016788: hydrolase activity, acting on ester bonds	1.23E-02
41	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.48E-02
42	GO:0008236: serine-type peptidase activity	1.54E-02
43	GO:0005096: GTPase activator activity	1.65E-02
44	GO:0052689: carboxylic ester hydrolase activity	1.66E-02
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.77E-02
46	GO:0004871: signal transducer activity	1.89E-02
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.01E-02
48	GO:0005215: transporter activity	2.33E-02
49	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-02
50	GO:0015293: symporter activity	2.46E-02
51	GO:0046872: metal ion binding	2.60E-02
52	GO:0005515: protein binding	2.85E-02
53	GO:0045330: aspartyl esterase activity	3.01E-02
54	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
55	GO:0008289: lipid binding	3.09E-02
56	GO:0030599: pectinesterase activity	3.44E-02
57	GO:0022857: transmembrane transporter activity	3.44E-02
58	GO:0051082: unfolded protein binding	3.59E-02
59	GO:0015035: protein disulfide oxidoreductase activity	3.67E-02
60	GO:0016746: transferase activity, transferring acyl groups	3.67E-02
61	GO:0000166: nucleotide binding	3.93E-02
62	GO:0019843: rRNA binding	4.22E-02
63	GO:0030170: pyridoxal phosphate binding	4.54E-02
64	GO:0005524: ATP binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0010007: magnesium chelatase complex	2.08E-06
3	GO:0009534: chloroplast thylakoid	7.70E-06
4	GO:0009570: chloroplast stroma	1.64E-05
5	GO:0009507: chloroplast	2.72E-05
6	GO:0009535: chloroplast thylakoid membrane	6.23E-05
7	GO:0005618: cell wall	7.06E-05
8	GO:0009515: granal stacked thylakoid	1.02E-04
9	GO:0043674: columella	1.02E-04
10	GO:0009941: chloroplast envelope	1.22E-04
11	GO:0016020: membrane	1.99E-04
12	GO:0009508: plastid chromosome	2.09E-04
13	GO:0030093: chloroplast photosystem I	2.40E-04
14	GO:0009505: plant-type cell wall	3.89E-04
15	GO:0009509: chromoplast	3.99E-04
16	GO:0005576: extracellular region	5.27E-04
17	GO:0005886: plasma membrane	5.60E-04
18	GO:0009531: secondary cell wall	5.73E-04
19	GO:0009295: nucleoid	1.02E-03
20	GO:0042807: central vacuole	1.65E-03
21	GO:0009986: cell surface	1.65E-03
22	GO:0009533: chloroplast stromal thylakoid	1.65E-03
23	GO:0042644: chloroplast nucleoid	2.45E-03
24	GO:0045298: tubulin complex	2.45E-03
25	GO:0005768: endosome	4.18E-03
26	GO:0030095: chloroplast photosystem II	4.37E-03
27	GO:0009543: chloroplast thylakoid lumen	5.66E-03
28	GO:0015629: actin cytoskeleton	7.06E-03
29	GO:0009522: photosystem I	9.26E-03
30	GO:0009523: photosystem II	9.73E-03
31	GO:0031977: thylakoid lumen	2.13E-02
32	GO:0005856: cytoskeleton	2.46E-02
33	GO:0005887: integral component of plasma membrane	3.02E-02
34	GO:0010008: endosome membrane	3.22E-02
35	GO:0048046: apoplast	3.40E-02
36	GO:0009579: thylakoid	4.69E-02