co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060966: regulation of gene silencing by RNA	0.00E+00
2	GO:0070829: heterochromatin maintenance	0.00E+00
3	GO:0071360: cellular response to exogenous dsRNA	0.00E+00
4	GO:1900370: positive regulation of RNA interference	0.00E+00
5	GO:0035563: positive regulation of chromatin binding	0.00E+00
6	GO:0046856: phosphatidylinositol dephosphorylation	1.03E-05
7	GO:1900368: regulation of RNA interference	1.67E-05
8	GO:1900111: positive regulation of histone H3-K9 dimethylation	4.35E-05
9	GO:0032776: DNA methylation on cytosine	7.77E-05
10	GO:0060968: regulation of gene silencing	7.77E-05
11	GO:0006013: mannose metabolic process	7.77E-05
12	GO:0060964: regulation of gene silencing by miRNA	1.17E-04
13	GO:0010438: cellular response to sulfur starvation	2.09E-04
14	GO:0009759: indole glucosinolate biosynthetic process	2.59E-04
15	GO:0030422: production of siRNA involved in RNA interference	6.68E-04
16	GO:0002213: defense response to insect	8.01E-04
17	GO:0080188: RNA-directed DNA methylation	1.01E-03
18	GO:0010025: wax biosynthetic process	1.08E-03
19	GO:0000162: tryptophan biosynthetic process	1.08E-03
20	GO:2000377: regulation of reactive oxygen species metabolic process	1.16E-03
21	GO:0019953: sexual reproduction	1.23E-03
22	GO:0007017: microtubule-based process	1.23E-03
23	GO:0006306: DNA methylation	1.31E-03
24	GO:0030245: cellulose catabolic process	1.39E-03
25	GO:0010017: red or far-red light signaling pathway	1.39E-03
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.54E-03
27	GO:0071472: cellular response to salt stress	1.82E-03
28	GO:0010305: leaf vascular tissue pattern formation	1.82E-03
29	GO:0042752: regulation of circadian rhythm	1.91E-03
30	GO:0016032: viral process	2.18E-03
31	GO:0009753: response to jasmonic acid	2.34E-03
32	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.87E-03
33	GO:0000160: phosphorelay signal transduction system	3.31E-03
34	GO:0010114: response to red light	4.47E-03
35	GO:0009736: cytokinin-activated signaling pathway	5.48E-03
36	GO:0043086: negative regulation of catalytic activity	6.15E-03
37	GO:0009624: response to nematode	6.99E-03
38	GO:0030154: cell differentiation	8.42E-03
39	GO:0007623: circadian rhythm	1.02E-02
40	GO:0045490: pectin catabolic process	1.02E-02
41	GO:0009451: RNA modification	1.04E-02
42	GO:0007166: cell surface receptor signaling pathway	1.12E-02
43	GO:0006468: protein phosphorylation	1.40E-02
44	GO:0009737: response to abscisic acid	1.65E-02
45	GO:0046777: protein autophosphorylation	1.70E-02
46	GO:0015979: photosynthesis	1.78E-02
47	GO:0006869: lipid transport	1.97E-02
48	GO:0016042: lipid catabolic process	2.10E-02
49	GO:0009751: response to salicylic acid	2.12E-02
50	GO:0006629: lipid metabolic process	2.14E-02
51	GO:0016567: protein ubiquitination	2.37E-02
52	GO:0009651: response to salt stress	2.61E-02
53	GO:0009735: response to cytokinin	3.02E-02
54	GO:0045893: positive regulation of transcription, DNA-templated	3.55E-02

Rank	GO Term	Adjusted P value
1	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.18E-06
2	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.22E-05
3	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.17E-04
4	GO:0004559: alpha-mannosidase activity	3.11E-04
5	GO:0047372: acylglycerol lipase activity	7.34E-04
6	GO:0030570: pectate lyase activity	1.47E-03
7	GO:0008810: cellulase activity	1.47E-03
8	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.78E-03
9	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.97E-03
10	GO:0000156: phosphorelay response regulator activity	2.28E-03
11	GO:0005200: structural constituent of cytoskeleton	2.48E-03
12	GO:0016787: hydrolase activity	2.74E-03
13	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.05E-03
14	GO:0030246: carbohydrate binding	5.14E-03
15	GO:0016298: lipase activity	5.61E-03
16	GO:0016746: transferase activity, transferring acyl groups	7.13E-03
17	GO:0004386: helicase activity	7.42E-03
18	GO:0044212: transcription regulatory region DNA binding	7.73E-03
19	GO:0004674: protein serine/threonine kinase activity	7.86E-03
20	GO:0016829: lyase activity	8.63E-03
21	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.74E-03
22	GO:0046910: pectinesterase inhibitor activity	9.74E-03
23	GO:0004672: protein kinase activity	1.14E-02
24	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.21E-02
25	GO:0052689: carboxylic ester hydrolase activity	1.74E-02
26	GO:0003924: GTPase activity	2.14E-02
27	GO:0004519: endonuclease activity	2.27E-02
28	GO:0016301: kinase activity	3.69E-02
29	GO:0005524: ATP binding	3.78E-02
30	GO:0043565: sequence-specific DNA binding	3.97E-02
31	GO:0005525: GTP binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0090577: RNA polymerase IV transcription factor complex	0.00E+00
2	GO:0031618: nuclear pericentric heterochromatin	0.00E+00
3	GO:0015630: microtubule cytoskeleton	1.17E-04
4	GO:0005578: proteinaceous extracellular matrix	8.70E-04
5	GO:0000419: DNA-directed RNA polymerase V complex	1.08E-03
6	GO:0009654: photosystem II oxygen evolving complex	1.23E-03
7	GO:0019898: extrinsic component of membrane	2.00E-03
8	GO:0031977: thylakoid lumen	4.23E-03
9	GO:0048046: apoplast	5.35E-03
10	GO:0009543: chloroplast thylakoid lumen	8.17E-03
11	GO:0009505: plant-type cell wall	9.70E-03
12	GO:0005576: extracellular region	1.44E-02
13	GO:0005874: microtubule	1.58E-02
14	GO:0043231: intracellular membrane-bounded organelle	2.29E-02
15	GO:0005618: cell wall	3.08E-02
16	GO:0016021: integral component of membrane	3.38E-02
17	GO:0009579: thylakoid	3.66E-02
18	GO:0009534: chloroplast thylakoid	3.69E-02