co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006066: alcohol metabolic process	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0015979: photosynthesis	7.91E-10
8	GO:0009773: photosynthetic electron transport in photosystem I	5.34E-07
9	GO:0018298: protein-chromophore linkage	7.32E-05
10	GO:0042335: cuticle development	2.19E-04
11	GO:1904966: positive regulation of vitamin E biosynthetic process	2.72E-04
12	GO:0000481: maturation of 5S rRNA	2.72E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	2.72E-04
14	GO:0033481: galacturonate biosynthetic process	2.72E-04
15	GO:0042371: vitamin K biosynthetic process	2.72E-04
16	GO:0034337: RNA folding	2.72E-04
17	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.72E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.72E-04
19	GO:0006427: histidyl-tRNA aminoacylation	2.72E-04
20	GO:0046520: sphingoid biosynthetic process	2.72E-04
21	GO:0016042: lipid catabolic process	2.84E-04
22	GO:0048829: root cap development	5.39E-04
23	GO:0001736: establishment of planar polarity	5.99E-04
24	GO:0010024: phytochromobilin biosynthetic process	5.99E-04
25	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.99E-04
26	GO:0010115: regulation of abscisic acid biosynthetic process	5.99E-04
27	GO:0034755: iron ion transmembrane transport	5.99E-04
28	GO:0000038: very long-chain fatty acid metabolic process	6.22E-04
29	GO:0016024: CDP-diacylglycerol biosynthetic process	7.11E-04
30	GO:0006006: glucose metabolic process	8.06E-04
31	GO:0006810: transport	8.59E-04
32	GO:0010143: cutin biosynthetic process	9.06E-04
33	GO:0015714: phosphoenolpyruvate transport	9.72E-04
34	GO:0006788: heme oxidation	9.72E-04
35	GO:0006833: water transport	1.12E-03
36	GO:0009926: auxin polar transport	1.35E-03
37	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-03
38	GO:0006168: adenine salvage	1.39E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.39E-03
40	GO:0006166: purine ribonucleoside salvage	1.39E-03
41	GO:0051639: actin filament network formation	1.39E-03
42	GO:0009152: purine ribonucleotide biosynthetic process	1.39E-03
43	GO:0046653: tetrahydrofolate metabolic process	1.39E-03
44	GO:0009800: cinnamic acid biosynthetic process	1.39E-03
45	GO:0009650: UV protection	1.39E-03
46	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.39E-03
47	GO:0003333: amino acid transmembrane transport	1.50E-03
48	GO:0031408: oxylipin biosynthetic process	1.50E-03
49	GO:0051764: actin crosslink formation	1.86E-03
50	GO:0006183: GTP biosynthetic process	1.86E-03
51	GO:0045727: positive regulation of translation	1.86E-03
52	GO:0015994: chlorophyll metabolic process	1.86E-03
53	GO:0031122: cytoplasmic microtubule organization	1.86E-03
54	GO:0015713: phosphoglycerate transport	1.86E-03
55	GO:0006857: oligopeptide transport	2.15E-03
56	GO:0034220: ion transmembrane transport	2.27E-03
57	GO:0042254: ribosome biogenesis	2.35E-03
58	GO:0006564: L-serine biosynthetic process	2.37E-03
59	GO:0031365: N-terminal protein amino acid modification	2.37E-03
60	GO:0006461: protein complex assembly	2.37E-03
61	GO:0044209: AMP salvage	2.37E-03
62	GO:0080110: sporopollenin biosynthetic process	2.37E-03
63	GO:0035435: phosphate ion transmembrane transport	2.93E-03
64	GO:0006561: proline biosynthetic process	2.93E-03
65	GO:0048759: xylem vessel member cell differentiation	2.93E-03
66	GO:0006751: glutathione catabolic process	2.93E-03
67	GO:0048827: phyllome development	2.93E-03
68	GO:0042549: photosystem II stabilization	2.93E-03
69	GO:0000470: maturation of LSU-rRNA	2.93E-03
70	GO:0009913: epidermal cell differentiation	2.93E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	2.93E-03
72	GO:0006559: L-phenylalanine catabolic process	2.93E-03
73	GO:0010190: cytochrome b6f complex assembly	2.93E-03
74	GO:0006596: polyamine biosynthetic process	2.93E-03
75	GO:0010019: chloroplast-nucleus signaling pathway	3.52E-03
76	GO:0042372: phylloquinone biosynthetic process	3.52E-03
77	GO:0009416: response to light stimulus	3.71E-03
78	GO:0050829: defense response to Gram-negative bacterium	4.15E-03
79	GO:0010444: guard mother cell differentiation	4.15E-03
80	GO:0006400: tRNA modification	4.15E-03
81	GO:0009395: phospholipid catabolic process	4.15E-03
82	GO:0030497: fatty acid elongation	4.15E-03
83	GO:1900057: positive regulation of leaf senescence	4.15E-03
84	GO:0009645: response to low light intensity stimulus	4.15E-03
85	GO:0010027: thylakoid membrane organization	4.36E-03
86	GO:0006605: protein targeting	4.82E-03
87	GO:0032508: DNA duplex unwinding	4.82E-03
88	GO:0055075: potassium ion homeostasis	4.82E-03
89	GO:0048564: photosystem I assembly	4.82E-03
90	GO:0008610: lipid biosynthetic process	4.82E-03
91	GO:0030091: protein repair	4.82E-03
92	GO:0046620: regulation of organ growth	4.82E-03
93	GO:0032544: plastid translation	5.52E-03
94	GO:0009657: plastid organization	5.52E-03
95	GO:0000373: Group II intron splicing	6.25E-03
96	GO:0009051: pentose-phosphate shunt, oxidative branch	6.25E-03
97	GO:0006098: pentose-phosphate shunt	6.25E-03
98	GO:0006865: amino acid transport	6.89E-03
99	GO:0010205: photoinhibition	7.03E-03
100	GO:0009638: phototropism	7.03E-03
101	GO:0009409: response to cold	7.09E-03
102	GO:0009688: abscisic acid biosynthetic process	7.82E-03
103	GO:0019538: protein metabolic process	7.82E-03
104	GO:0006879: cellular iron ion homeostasis	8.66E-03
105	GO:0009750: response to fructose	8.66E-03
106	GO:0048765: root hair cell differentiation	8.66E-03
107	GO:0008285: negative regulation of cell proliferation	8.66E-03
108	GO:0009073: aromatic amino acid family biosynthetic process	8.66E-03
109	GO:0009640: photomorphogenesis	9.30E-03
110	GO:0015706: nitrate transport	9.52E-03
111	GO:0009644: response to high light intensity	1.01E-02
112	GO:0010628: positive regulation of gene expression	1.04E-02
113	GO:0010229: inflorescence development	1.04E-02
114	GO:0009725: response to hormone	1.04E-02
115	GO:0006094: gluconeogenesis	1.04E-02
116	GO:0009658: chloroplast organization	1.08E-02
117	GO:0019253: reductive pentose-phosphate cycle	1.13E-02
118	GO:0010540: basipetal auxin transport	1.13E-02
119	GO:0010207: photosystem II assembly	1.13E-02
120	GO:0009735: response to cytokinin	1.19E-02
121	GO:0009225: nucleotide-sugar metabolic process	1.23E-02
122	GO:0010167: response to nitrate	1.23E-02
123	GO:0071555: cell wall organization	1.27E-02
124	GO:0006636: unsaturated fatty acid biosynthetic process	1.33E-02
125	GO:0010025: wax biosynthetic process	1.33E-02
126	GO:0051017: actin filament bundle assembly	1.43E-02
127	GO:0006487: protein N-linked glycosylation	1.43E-02
128	GO:0000027: ribosomal large subunit assembly	1.43E-02
129	GO:0006096: glycolytic process	1.49E-02
130	GO:0010073: meristem maintenance	1.53E-02
131	GO:0009695: jasmonic acid biosynthetic process	1.53E-02
132	GO:0007017: microtubule-based process	1.53E-02
133	GO:0048511: rhythmic process	1.64E-02
134	GO:0030245: cellulose catabolic process	1.75E-02
135	GO:0009624: response to nematode	1.79E-02
136	GO:0009411: response to UV	1.86E-02
137	GO:0010227: floral organ abscission	1.86E-02
138	GO:0055085: transmembrane transport	1.95E-02
139	GO:0042127: regulation of cell proliferation	1.97E-02
140	GO:0009306: protein secretion	1.97E-02
141	GO:0010584: pollen exine formation	1.97E-02
142	GO:0019722: calcium-mediated signaling	1.97E-02
143	GO:0006869: lipid transport	2.00E-02
144	GO:0010087: phloem or xylem histogenesis	2.21E-02
145	GO:0010182: sugar mediated signaling pathway	2.33E-02
146	GO:0009958: positive gravitropism	2.33E-02
147	GO:0042752: regulation of circadian rhythm	2.45E-02
148	GO:0048825: cotyledon development	2.58E-02
149	GO:0071554: cell wall organization or biogenesis	2.71E-02
150	GO:0000302: response to reactive oxygen species	2.71E-02
151	GO:0006633: fatty acid biosynthetic process	2.82E-02
152	GO:0007267: cell-cell signaling	3.24E-02
153	GO:0001666: response to hypoxia	3.52E-02
154	GO:0009911: positive regulation of flower development	3.52E-02
155	GO:0009734: auxin-activated signaling pathway	3.55E-02
156	GO:0009414: response to water deprivation	3.74E-02
157	GO:0042128: nitrate assimilation	3.80E-02
158	GO:0015995: chlorophyll biosynthetic process	3.95E-02
159	GO:0010411: xyloglucan metabolic process	3.95E-02
160	GO:0016311: dephosphorylation	4.10E-02
161	GO:0055114: oxidation-reduction process	4.17E-02
162	GO:0007165: signal transduction	4.35E-02
163	GO:0010311: lateral root formation	4.40E-02
164	GO:0000160: phosphorelay signal transduction system	4.40E-02
165	GO:0010218: response to far red light	4.55E-02
166	GO:0009407: toxin catabolic process	4.55E-02
167	GO:0009631: cold acclimation	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0010487: thermospermine synthase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0005528: FK506 binding	7.69E-10
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-06
10	GO:0016788: hydrolase activity, acting on ester bonds	8.59E-06
11	GO:0052689: carboxylic ester hydrolase activity	2.18E-05
12	GO:0016168: chlorophyll binding	4.91E-05
13	GO:0010328: auxin influx transmembrane transporter activity	4.98E-05
14	GO:0015293: symporter activity	2.17E-04
15	GO:0016768: spermine synthase activity	2.72E-04
16	GO:0000170: sphingosine hydroxylase activity	2.72E-04
17	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.72E-04
18	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.72E-04
19	GO:0008568: microtubule-severing ATPase activity	2.72E-04
20	GO:0004821: histidine-tRNA ligase activity	2.72E-04
21	GO:0004321: fatty-acyl-CoA synthase activity	2.72E-04
22	GO:0005215: transporter activity	4.29E-04
23	GO:0016746: transferase activity, transferring acyl groups	5.37E-04
24	GO:0047746: chlorophyllase activity	5.99E-04
25	GO:0003839: gamma-glutamylcyclotransferase activity	5.99E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	5.99E-04
27	GO:0003938: IMP dehydrogenase activity	5.99E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.99E-04
29	GO:0042284: sphingolipid delta-4 desaturase activity	5.99E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.99E-04
31	GO:0019843: rRNA binding	7.24E-04
32	GO:0004565: beta-galactosidase activity	8.06E-04
33	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.72E-04
34	GO:0008864: formyltetrahydrofolate deformylase activity	9.72E-04
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.72E-04
36	GO:0050734: hydroxycinnamoyltransferase activity	9.72E-04
37	GO:0045548: phenylalanine ammonia-lyase activity	9.72E-04
38	GO:0004871: signal transducer activity	1.02E-03
39	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.12E-03
40	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.12E-03
41	GO:0031409: pigment binding	1.12E-03
42	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.12E-03
43	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.39E-03
44	GO:0016851: magnesium chelatase activity	1.39E-03
45	GO:0003999: adenine phosphoribosyltransferase activity	1.39E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	1.79E-03
47	GO:0004392: heme oxygenase (decyclizing) activity	1.86E-03
48	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.86E-03
49	GO:0015120: phosphoglycerate transmembrane transporter activity	1.86E-03
50	GO:0010011: auxin binding	1.86E-03
51	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.86E-03
52	GO:0052793: pectin acetylesterase activity	1.86E-03
53	GO:0043495: protein anchor	1.86E-03
54	GO:0050378: UDP-glucuronate 4-epimerase activity	1.86E-03
55	GO:0009922: fatty acid elongase activity	2.37E-03
56	GO:0050662: coenzyme binding	2.63E-03
57	GO:0016688: L-ascorbate peroxidase activity	2.93E-03
58	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	2.93E-03
60	GO:0004629: phospholipase C activity	2.93E-03
61	GO:0004130: cytochrome-c peroxidase activity	2.93E-03
62	GO:0035673: oligopeptide transmembrane transporter activity	2.93E-03
63	GO:0016208: AMP binding	2.93E-03
64	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.93E-03
65	GO:0004435: phosphatidylinositol phospholipase C activity	3.52E-03
66	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.52E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.52E-03
68	GO:0051753: mannan synthase activity	3.52E-03
69	GO:0008235: metalloexopeptidase activity	4.15E-03
70	GO:0019899: enzyme binding	4.15E-03
71	GO:0015250: water channel activity	4.36E-03
72	GO:0003824: catalytic activity	4.70E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.52E-03
74	GO:0016207: 4-coumarate-CoA ligase activity	6.25E-03
75	GO:0009055: electron carrier activity	6.37E-03
76	GO:0016491: oxidoreductase activity	6.71E-03
77	GO:0015112: nitrate transmembrane transporter activity	7.03E-03
78	GO:0005381: iron ion transmembrane transporter activity	7.03E-03
79	GO:0003993: acid phosphatase activity	7.53E-03
80	GO:0050661: NADP binding	8.22E-03
81	GO:0004177: aminopeptidase activity	8.66E-03
82	GO:0015386: potassium:proton antiporter activity	8.66E-03
83	GO:0015198: oligopeptide transporter activity	9.52E-03
84	GO:0004022: alcohol dehydrogenase (NAD) activity	1.04E-02
85	GO:0015114: phosphate ion transmembrane transporter activity	1.04E-02
86	GO:0008081: phosphoric diester hydrolase activity	1.04E-02
87	GO:0005509: calcium ion binding	1.10E-02
88	GO:0008266: poly(U) RNA binding	1.13E-02
89	GO:0051287: NAD binding	1.13E-02
90	GO:0015171: amino acid transmembrane transporter activity	1.39E-02
91	GO:0043424: protein histidine kinase binding	1.53E-02
92	GO:0015079: potassium ion transmembrane transporter activity	1.53E-02
93	GO:0030570: pectate lyase activity	1.86E-02
94	GO:0008810: cellulase activity	1.86E-02
95	GO:0008514: organic anion transmembrane transporter activity	1.97E-02
96	GO:0004872: receptor activity	2.58E-02
97	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.71E-02
98	GO:0015297: antiporter activity	2.96E-02
99	GO:0000156: phosphorelay response regulator activity	2.97E-02
100	GO:0051015: actin filament binding	2.97E-02
101	GO:0016791: phosphatase activity	3.10E-02
102	GO:0005200: structural constituent of cytoskeleton	3.24E-02
103	GO:0016413: O-acetyltransferase activity	3.38E-02
104	GO:0016597: amino acid binding	3.38E-02
105	GO:0008289: lipid binding	3.50E-02
106	GO:0008375: acetylglucosaminyltransferase activity	3.80E-02
107	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.80E-02
108	GO:0042802: identical protein binding	3.93E-02
109	GO:0004683: calmodulin-dependent protein kinase activity	3.95E-02
110	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.95E-02
111	GO:0003735: structural constituent of ribosome	4.04E-02
112	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-02
113	GO:0015238: drug transmembrane transporter activity	4.40E-02
114	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.55E-02
115	GO:0008168: methyltransferase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009543: chloroplast thylakoid lumen	9.10E-19
3	GO:0009507: chloroplast	4.44E-18
4	GO:0009535: chloroplast thylakoid membrane	8.32E-14
5	GO:0031977: thylakoid lumen	3.38E-13
6	GO:0009579: thylakoid	4.15E-13
7	GO:0009941: chloroplast envelope	1.62E-07
8	GO:0009570: chloroplast stroma	2.93E-07
9	GO:0009534: chloroplast thylakoid	1.53E-06
10	GO:0009654: photosystem II oxygen evolving complex	3.66E-06
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.25E-05
12	GO:0031969: chloroplast membrane	1.60E-05
13	GO:0019898: extrinsic component of membrane	1.82E-05
14	GO:0009782: photosystem I antenna complex	2.72E-04
15	GO:0009523: photosystem II	2.95E-04
16	GO:0030095: chloroplast photosystem II	9.06E-04
17	GO:0010007: magnesium chelatase complex	9.72E-04
18	GO:0016020: membrane	9.81E-04
19	GO:0030076: light-harvesting complex	1.01E-03
20	GO:0005886: plasma membrane	1.16E-03
21	GO:0015630: microtubule cytoskeleton	1.39E-03
22	GO:0032432: actin filament bundle	1.39E-03
23	GO:0016021: integral component of membrane	1.40E-03
24	GO:0048046: apoplast	2.78E-03
25	GO:0010287: plastoglobule	3.83E-03
26	GO:0009986: cell surface	4.15E-03
27	GO:0009533: chloroplast stromal thylakoid	4.15E-03
28	GO:0008180: COP9 signalosome	6.25E-03
29	GO:0031225: anchored component of membrane	8.06E-03
30	GO:0005884: actin filament	8.66E-03
31	GO:0046658: anchored component of plasma membrane	8.84E-03
32	GO:0032040: small-subunit processome	9.52E-03
33	GO:0005840: ribosome	1.37E-02
34	GO:0042651: thylakoid membrane	1.53E-02
35	GO:0005777: peroxisome	1.68E-02
36	GO:0005770: late endosome	2.33E-02
37	GO:0009522: photosystem I	2.45E-02
38	GO:0032580: Golgi cisterna membrane	3.10E-02
39	GO:0005778: peroxisomal membrane	3.24E-02
40	GO:0005887: integral component of plasma membrane	3.40E-02
41	GO:0030529: intracellular ribonucleoprotein complex	3.52E-02
42	GO:0019005: SCF ubiquitin ligase complex	4.25E-02
43	GO:0000151: ubiquitin ligase complex	4.25E-02