co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G18360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:1904526: regulation of microtubule binding	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	1.33E-07
8	GO:0015979: photosynthesis	8.96E-05
9	GO:0043007: maintenance of rDNA	1.18E-04
10	GO:0010028: xanthophyll cycle	1.18E-04
11	GO:0034337: RNA folding	1.18E-04
12	GO:0006824: cobalt ion transport	1.18E-04
13	GO:0046856: phosphatidylinositol dephosphorylation	1.91E-04
14	GO:0016122: xanthophyll metabolic process	2.73E-04
15	GO:0006898: receptor-mediated endocytosis	2.73E-04
16	GO:0034755: iron ion transmembrane transport	2.73E-04
17	GO:1901679: nucleotide transmembrane transport	2.73E-04
18	GO:0080121: AMP transport	4.52E-04
19	GO:0016045: detection of bacterium	4.52E-04
20	GO:0010359: regulation of anion channel activity	4.52E-04
21	GO:0051639: actin filament network formation	6.47E-04
22	GO:0010305: leaf vascular tissue pattern formation	7.83E-04
23	GO:0051764: actin crosslink formation	8.60E-04
24	GO:0015994: chlorophyll metabolic process	8.60E-04
25	GO:0015867: ATP transport	8.60E-04
26	GO:0042938: dipeptide transport	8.60E-04
27	GO:0010438: cellular response to sulfur starvation	1.08E-03
28	GO:0009697: salicylic acid biosynthetic process	1.08E-03
29	GO:0015866: ADP transport	1.33E-03
30	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.33E-03
31	GO:0009228: thiamine biosynthetic process	1.33E-03
32	GO:0035435: phosphate ion transmembrane transport	1.33E-03
33	GO:0009913: epidermal cell differentiation	1.33E-03
34	GO:0010190: cytochrome b6f complex assembly	1.33E-03
35	GO:0009759: indole glucosinolate biosynthetic process	1.33E-03
36	GO:1901259: chloroplast rRNA processing	1.59E-03
37	GO:0042372: phylloquinone biosynthetic process	1.59E-03
38	GO:0045926: negative regulation of growth	1.59E-03
39	GO:0009942: longitudinal axis specification	1.59E-03
40	GO:0098655: cation transmembrane transport	1.59E-03
41	GO:0010189: vitamin E biosynthetic process	1.59E-03
42	GO:0050829: defense response to Gram-negative bacterium	1.87E-03
43	GO:0010444: guard mother cell differentiation	1.87E-03
44	GO:0010492: maintenance of shoot apical meristem identity	2.16E-03
45	GO:0009657: plastid organization	2.46E-03
46	GO:0007389: pattern specification process	2.46E-03
47	GO:0098656: anion transmembrane transport	2.78E-03
48	GO:0048507: meristem development	2.78E-03
49	GO:0010206: photosystem II repair	2.78E-03
50	GO:0006783: heme biosynthetic process	2.78E-03
51	GO:0009638: phototropism	3.12E-03
52	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.27E-03
53	GO:0045036: protein targeting to chloroplast	3.46E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	3.46E-03
55	GO:0009773: photosynthetic electron transport in photosystem I	3.82E-03
56	GO:0052544: defense response by callose deposition in cell wall	3.82E-03
57	GO:1903507: negative regulation of nucleic acid-templated transcription	3.82E-03
58	GO:0002213: defense response to insect	4.19E-03
59	GO:0015706: nitrate transport	4.19E-03
60	GO:0050826: response to freezing	4.57E-03
61	GO:0006094: gluconeogenesis	4.57E-03
62	GO:0010588: cotyledon vascular tissue pattern formation	4.57E-03
63	GO:0009785: blue light signaling pathway	4.57E-03
64	GO:0030048: actin filament-based movement	4.57E-03
65	GO:0009934: regulation of meristem structural organization	4.97E-03
66	GO:0010207: photosystem II assembly	4.97E-03
67	GO:0010030: positive regulation of seed germination	5.37E-03
68	GO:0000162: tryptophan biosynthetic process	5.79E-03
69	GO:0005992: trehalose biosynthetic process	6.22E-03
70	GO:0051017: actin filament bundle assembly	6.22E-03
71	GO:2000377: regulation of reactive oxygen species metabolic process	6.22E-03
72	GO:0016114: terpenoid biosynthetic process	7.11E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.57E-03
74	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.02E-03
75	GO:0045490: pectin catabolic process	9.43E-03
76	GO:0007623: circadian rhythm	9.43E-03
77	GO:0010087: phloem or xylem histogenesis	9.53E-03
78	GO:0042631: cellular response to water deprivation	9.53E-03
79	GO:0042335: cuticle development	9.53E-03
80	GO:0080022: primary root development	9.53E-03
81	GO:0071472: cellular response to salt stress	1.00E-02
82	GO:0007018: microtubule-based movement	1.06E-02
83	GO:0048825: cotyledon development	1.11E-02
84	GO:0010193: response to ozone	1.16E-02
85	GO:0000302: response to reactive oxygen species	1.16E-02
86	GO:0010583: response to cyclopentenone	1.22E-02
87	GO:0016032: viral process	1.22E-02
88	GO:0010252: auxin homeostasis	1.33E-02
89	GO:0071805: potassium ion transmembrane transport	1.39E-02
90	GO:0055085: transmembrane transport	1.44E-02
91	GO:0007568: aging	2.02E-02
92	GO:0006468: protein phosphorylation	2.02E-02
93	GO:0006865: amino acid transport	2.09E-02
94	GO:0016051: carbohydrate biosynthetic process	2.16E-02
95	GO:0034599: cellular response to oxidative stress	2.23E-02
96	GO:0006839: mitochondrial transport	2.37E-02
97	GO:0006631: fatty acid metabolic process	2.44E-02
98	GO:0010114: response to red light	2.59E-02
99	GO:0009926: auxin polar transport	2.59E-02
100	GO:0009753: response to jasmonic acid	2.88E-02
101	GO:0006855: drug transmembrane transport	2.88E-02
102	GO:0030154: cell differentiation	2.89E-02
103	GO:0031347: regulation of defense response	2.96E-02
104	GO:0009664: plant-type cell wall organization	3.04E-02
105	GO:0006364: rRNA processing	3.20E-02
106	GO:0009585: red, far-red light phototransduction	3.20E-02
107	GO:0006813: potassium ion transport	3.20E-02
108	GO:0010224: response to UV-B	3.28E-02
109	GO:0006857: oligopeptide transport	3.36E-02
110	GO:0006417: regulation of translation	3.44E-02
111	GO:0016567: protein ubiquitination	3.45E-02
112	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.55E-02
113	GO:0006096: glycolytic process	3.60E-02
114	GO:0043086: negative regulation of catalytic activity	3.60E-02
115	GO:0048367: shoot system development	3.68E-02
116	GO:0042545: cell wall modification	4.02E-02
117	GO:0009624: response to nematode	4.11E-02
118	GO:0006396: RNA processing	4.19E-02
119	GO:0009416: response to light stimulus	4.74E-02
120	GO:0009611: response to wounding	4.84E-02
121	GO:0009058: biosynthetic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.95E-05
5	GO:0004853: uroporphyrinogen decarboxylase activity	1.18E-04
6	GO:0008909: isochorismate synthase activity	1.18E-04
7	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.21E-04
8	GO:0016868: intramolecular transferase activity, phosphotransferases	2.73E-04
9	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	2.73E-04
10	GO:0019172: glyoxalase III activity	2.73E-04
11	GO:0004445: inositol-polyphosphate 5-phosphatase activity	6.47E-04
12	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.47E-04
13	GO:0016851: magnesium chelatase activity	6.47E-04
14	GO:0042936: dipeptide transporter activity	8.60E-04
15	GO:0080122: AMP transmembrane transporter activity	1.08E-03
16	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.08E-03
17	GO:0004332: fructose-bisphosphate aldolase activity	1.33E-03
18	GO:0004130: cytochrome-c peroxidase activity	1.33E-03
19	GO:0042578: phosphoric ester hydrolase activity	1.33E-03
20	GO:0004462: lactoylglutathione lyase activity	1.33E-03
21	GO:0015217: ADP transmembrane transporter activity	1.59E-03
22	GO:0016832: aldehyde-lyase activity	1.59E-03
23	GO:0005347: ATP transmembrane transporter activity	1.59E-03
24	GO:0043621: protein self-association	3.09E-03
25	GO:0005381: iron ion transmembrane transporter activity	3.12E-03
26	GO:0009672: auxin:proton symporter activity	3.12E-03
27	GO:0015020: glucuronosyltransferase activity	3.46E-03
28	GO:0004805: trehalose-phosphatase activity	3.46E-03
29	GO:0003777: microtubule motor activity	4.25E-03
30	GO:0031072: heat shock protein binding	4.57E-03
31	GO:0015114: phosphate ion transmembrane transporter activity	4.57E-03
32	GO:0010329: auxin efflux transmembrane transporter activity	4.57E-03
33	GO:0003774: motor activity	4.97E-03
34	GO:0003714: transcription corepressor activity	6.22E-03
35	GO:0015079: potassium ion transmembrane transporter activity	6.66E-03
36	GO:0033612: receptor serine/threonine kinase binding	7.11E-03
37	GO:0005515: protein binding	7.21E-03
38	GO:0005215: transporter activity	7.63E-03
39	GO:0030570: pectate lyase activity	8.05E-03
40	GO:0003727: single-stranded RNA binding	8.53E-03
41	GO:0003756: protein disulfide isomerase activity	8.53E-03
42	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.79E-03
43	GO:0046910: pectinesterase inhibitor activity	8.79E-03
44	GO:0019901: protein kinase binding	1.11E-02
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.20E-02
46	GO:0051015: actin filament binding	1.28E-02
47	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.39E-02
48	GO:0016597: amino acid binding	1.45E-02
49	GO:0008375: acetylglucosaminyltransferase activity	1.63E-02
50	GO:0005096: GTPase activator activity	1.89E-02
51	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.02E-02
52	GO:0016787: hydrolase activity	2.06E-02
53	GO:0003746: translation elongation factor activity	2.16E-02
54	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.18E-02
55	GO:0004871: signal transducer activity	2.28E-02
56	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.42E-02
57	GO:0015171: amino acid transmembrane transporter activity	3.44E-02
58	GO:0045330: aspartyl esterase activity	3.44E-02
59	GO:0008289: lipid binding	3.73E-02
60	GO:0016874: ligase activity	3.94E-02
61	GO:0030599: pectinesterase activity	3.94E-02
62	GO:0003779: actin binding	4.02E-02
63	GO:0051082: unfolded protein binding	4.11E-02
64	GO:0019843: rRNA binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	5.98E-14
3	GO:0009534: chloroplast thylakoid	1.51E-11
4	GO:0009535: chloroplast thylakoid membrane	1.83E-10
5	GO:0009543: chloroplast thylakoid lumen	2.79E-07
6	GO:0031977: thylakoid lumen	1.65E-05
7	GO:0009570: chloroplast stroma	3.71E-05
8	GO:0009941: chloroplast envelope	2.21E-04
9	GO:0030093: chloroplast photosystem I	2.73E-04
10	GO:0030095: chloroplast photosystem II	2.87E-04
11	GO:0010007: magnesium chelatase complex	4.52E-04
12	GO:0031969: chloroplast membrane	5.26E-04
13	GO:0009579: thylakoid	6.29E-04
14	GO:0009531: secondary cell wall	6.47E-04
15	GO:0042646: plastid nucleoid	6.47E-04
16	GO:0032432: actin filament bundle	6.47E-04
17	GO:0009522: photosystem I	8.40E-04
18	GO:0016363: nuclear matrix	1.59E-03
19	GO:0042644: chloroplast nucleoid	2.78E-03
20	GO:0016459: myosin complex	3.46E-03
21	GO:0005884: actin filament	3.82E-03
22	GO:0032040: small-subunit processome	4.19E-03
23	GO:0009508: plastid chromosome	4.57E-03
24	GO:0009706: chloroplast inner membrane	5.46E-03
25	GO:0010287: plastoglobule	6.47E-03
26	GO:0009654: photosystem II oxygen evolving complex	6.66E-03
27	GO:0005871: kinesin complex	9.02E-03
28	GO:0019898: extrinsic component of membrane	1.11E-02
29	GO:0071944: cell periphery	1.28E-02
30	GO:0009295: nucleoid	1.39E-02
31	GO:0005886: plasma membrane	1.85E-02
32	GO:0000325: plant-type vacuole	2.02E-02
33	GO:0016021: integral component of membrane	2.04E-02
34	GO:0009536: plastid	3.35E-02
35	GO:0010008: endosome membrane	3.68E-02
36	GO:0005623: cell	4.91E-02