Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0015979: photosynthesis1.55E-09
12GO:0009773: photosynthetic electron transport in photosystem I7.07E-07
13GO:0009735: response to cytokinin7.76E-07
14GO:0009658: chloroplast organization1.04E-06
15GO:0032544: plastid translation1.11E-05
16GO:2001141: regulation of RNA biosynthetic process3.21E-05
17GO:0045454: cell redox homeostasis4.02E-05
18GO:0009767: photosynthetic electron transport chain5.34E-05
19GO:2000122: negative regulation of stomatal complex development5.77E-05
20GO:0006546: glycine catabolic process5.77E-05
21GO:0010037: response to carbon dioxide5.77E-05
22GO:0015976: carbon utilization5.77E-05
23GO:0019464: glycine decarboxylation via glycine cleavage system5.77E-05
24GO:0010207: photosystem II assembly6.46E-05
25GO:0019253: reductive pentose-phosphate cycle6.46E-05
26GO:0010190: cytochrome b6f complex assembly1.32E-04
27GO:0042549: photosystem II stabilization1.32E-04
28GO:0016117: carotenoid biosynthetic process2.33E-04
29GO:0010196: nonphotochemical quenching2.36E-04
30GO:0000413: protein peptidyl-prolyl isomerization2.60E-04
31GO:0009443: pyridoxal 5'-phosphate salvage2.97E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process2.97E-04
33GO:1904964: positive regulation of phytol biosynthetic process2.97E-04
34GO:0071588: hydrogen peroxide mediated signaling pathway2.97E-04
35GO:0006810: transport3.64E-04
36GO:0009657: plastid organization3.66E-04
37GO:0071482: cellular response to light stimulus3.66E-04
38GO:0042742: defense response to bacterium4.60E-04
39GO:0006779: porphyrin-containing compound biosynthetic process5.22E-04
40GO:0006695: cholesterol biosynthetic process6.50E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process6.50E-04
42GO:0030388: fructose 1,6-bisphosphate metabolic process6.50E-04
43GO:2000123: positive regulation of stomatal complex development6.50E-04
44GO:0010270: photosystem II oxygen evolving complex assembly6.50E-04
45GO:0010275: NAD(P)H dehydrogenase complex assembly6.50E-04
46GO:0043039: tRNA aminoacylation6.50E-04
47GO:0043085: positive regulation of catalytic activity7.02E-04
48GO:0006415: translational termination7.02E-04
49GO:0006352: DNA-templated transcription, initiation7.02E-04
50GO:0018119: peptidyl-cysteine S-nitrosylation7.02E-04
51GO:0009817: defense response to fungus, incompatible interaction8.58E-04
52GO:0018298: protein-chromophore linkage8.58E-04
53GO:0006094: gluconeogenesis9.08E-04
54GO:0006000: fructose metabolic process1.05E-03
55GO:0010581: regulation of starch biosynthetic process1.05E-03
56GO:0006518: peptide metabolic process1.05E-03
57GO:0071492: cellular response to UV-A1.05E-03
58GO:0006696: ergosterol biosynthetic process1.05E-03
59GO:0009853: photorespiration1.15E-03
60GO:0019344: cysteine biosynthetic process1.40E-03
61GO:0033014: tetrapyrrole biosynthetic process1.51E-03
62GO:0016556: mRNA modification1.51E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.51E-03
64GO:0010239: chloroplast mRNA processing1.51E-03
65GO:0006418: tRNA aminoacylation for protein translation1.55E-03
66GO:0009768: photosynthesis, light harvesting in photosystem I1.55E-03
67GO:0006412: translation1.55E-03
68GO:0061077: chaperone-mediated protein folding1.70E-03
69GO:0080092: regulation of pollen tube growth1.86E-03
70GO:2000038: regulation of stomatal complex development2.02E-03
71GO:0006542: glutamine biosynthetic process2.02E-03
72GO:0019676: ammonia assimilation cycle2.02E-03
73GO:0071486: cellular response to high light intensity2.02E-03
74GO:0009765: photosynthesis, light harvesting2.02E-03
75GO:0006085: acetyl-CoA biosynthetic process2.02E-03
76GO:0010375: stomatal complex patterning2.58E-03
77GO:0016120: carotene biosynthetic process2.58E-03
78GO:0031365: N-terminal protein amino acid modification2.58E-03
79GO:0006461: protein complex assembly2.58E-03
80GO:0016123: xanthophyll biosynthetic process2.58E-03
81GO:0042254: ribosome biogenesis2.85E-03
82GO:0006096: glycolytic process2.86E-03
83GO:0016554: cytidine to uridine editing3.19E-03
84GO:0006828: manganese ion transport3.19E-03
85GO:0042026: protein refolding3.84E-03
86GO:0042372: phylloquinone biosynthetic process3.84E-03
87GO:0006458: 'de novo' protein folding3.84E-03
88GO:0009854: oxidative photosynthetic carbon pathway3.84E-03
89GO:0010019: chloroplast-nucleus signaling pathway3.84E-03
90GO:0010555: response to mannitol3.84E-03
91GO:0046686: response to cadmium ion4.07E-03
92GO:0009645: response to low light intensity stimulus4.53E-03
93GO:0006400: tRNA modification4.53E-03
94GO:0010027: thylakoid membrane organization4.94E-03
95GO:0008610: lipid biosynthetic process5.26E-03
96GO:0009642: response to light intensity5.26E-03
97GO:0019430: removal of superoxide radicals6.03E-03
98GO:0017004: cytochrome complex assembly6.03E-03
99GO:0006002: fructose 6-phosphate metabolic process6.03E-03
100GO:0006508: proteolysis6.70E-03
101GO:0006098: pentose-phosphate shunt6.83E-03
102GO:0045337: farnesyl diphosphate biosynthetic process6.83E-03
103GO:0010206: photosystem II repair6.83E-03
104GO:0033384: geranyl diphosphate biosynthetic process6.83E-03
105GO:0006783: heme biosynthetic process6.83E-03
106GO:0006457: protein folding7.27E-03
107GO:0010119: regulation of stomatal movement7.46E-03
108GO:1900865: chloroplast RNA modification7.67E-03
109GO:0010380: regulation of chlorophyll biosynthetic process7.67E-03
110GO:0009637: response to blue light8.18E-03
111GO:0006782: protoporphyrinogen IX biosynthetic process8.55E-03
112GO:0006535: cysteine biosynthetic process from serine8.55E-03
113GO:0043069: negative regulation of programmed cell death8.55E-03
114GO:0034599: cellular response to oxidative stress8.56E-03
115GO:0009409: response to cold9.09E-03
116GO:0006816: calcium ion transport9.46E-03
117GO:0009073: aromatic amino acid family biosynthetic process9.46E-03
118GO:0009793: embryo development ending in seed dormancy9.53E-03
119GO:0055114: oxidation-reduction process9.62E-03
120GO:0045037: protein import into chloroplast stroma1.04E-02
121GO:0010114: response to red light1.06E-02
122GO:0009644: response to high light intensity1.14E-02
123GO:0005986: sucrose biosynthetic process1.14E-02
124GO:0010020: chloroplast fission1.24E-02
125GO:0005985: sucrose metabolic process1.34E-02
126GO:0090351: seedling development1.34E-02
127GO:0006636: unsaturated fatty acid biosynthetic process1.45E-02
128GO:0000027: ribosomal large subunit assembly1.56E-02
129GO:0080167: response to karrikin1.67E-02
130GO:0016575: histone deacetylation1.68E-02
131GO:0006730: one-carbon metabolic process1.91E-02
132GO:0042335: cuticle development2.42E-02
133GO:0000271: polysaccharide biosynthetic process2.42E-02
134GO:0045489: pectin biosynthetic process2.55E-02
135GO:0006662: glycerol ether metabolic process2.55E-02
136GO:0006814: sodium ion transport2.68E-02
137GO:0042744: hydrogen peroxide catabolic process2.91E-02
138GO:0000302: response to reactive oxygen species2.96E-02
139GO:0009790: embryo development2.98E-02
140GO:0008152: metabolic process3.07E-02
141GO:0006633: fatty acid biosynthetic process3.20E-02
142GO:0006413: translational initiation3.28E-02
143GO:0007267: cell-cell signaling3.55E-02
144GO:0001666: response to hypoxia3.85E-02
145GO:0042128: nitrate assimilation4.16E-02
146GO:0008380: RNA splicing4.19E-02
147GO:0015995: chlorophyll biosynthetic process4.32E-02
148GO:0048481: plant ovule development4.65E-02
149GO:0009407: toxin catabolic process4.98E-02
150GO:0010218: response to far red light4.98E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
14GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
15GO:0019843: rRNA binding9.57E-07
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.65E-06
17GO:0051920: peroxiredoxin activity3.16E-06
18GO:0004618: phosphoglycerate kinase activity4.02E-06
19GO:0004033: aldo-keto reductase (NADP) activity7.70E-06
20GO:0016209: antioxidant activity7.70E-06
21GO:0004148: dihydrolipoyl dehydrogenase activity1.44E-05
22GO:0016149: translation release factor activity, codon specific3.21E-05
23GO:0004375: glycine dehydrogenase (decarboxylating) activity3.21E-05
24GO:0016987: sigma factor activity5.77E-05
25GO:0001053: plastid sigma factor activity5.77E-05
26GO:0016168: chlorophyll binding6.22E-05
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.81E-04
28GO:0080132: fatty acid alpha-hydroxylase activity2.97E-04
29GO:0004831: tyrosine-tRNA ligase activity2.97E-04
30GO:0009496: plastoquinol--plastocyanin reductase activity2.97E-04
31GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.97E-04
32GO:0004325: ferrochelatase activity2.97E-04
33GO:0051996: squalene synthase activity2.97E-04
34GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.97E-04
35GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.97E-04
36GO:0003747: translation release factor activity4.41E-04
37GO:0008047: enzyme activator activity6.09E-04
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.50E-04
39GO:0050017: L-3-cyanoalanine synthase activity6.50E-04
40GO:0042389: omega-3 fatty acid desaturase activity6.50E-04
41GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.50E-04
42GO:0004047: aminomethyltransferase activity6.50E-04
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.50E-04
44GO:0005089: Rho guanyl-nucleotide exchange factor activity7.02E-04
45GO:0003735: structural constituent of ribosome8.18E-04
46GO:0004089: carbonate dehydratase activity9.08E-04
47GO:0031072: heat shock protein binding9.08E-04
48GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.05E-03
49GO:0002161: aminoacyl-tRNA editing activity1.05E-03
50GO:0070402: NADPH binding1.05E-03
51GO:0004324: ferredoxin-NADP+ reductase activity1.05E-03
52GO:0031409: pigment binding1.27E-03
53GO:0005528: FK506 binding1.40E-03
54GO:0048487: beta-tubulin binding1.51E-03
55GO:0043023: ribosomal large subunit binding1.51E-03
56GO:0008097: 5S rRNA binding1.51E-03
57GO:0008508: bile acid:sodium symporter activity1.51E-03
58GO:0003878: ATP citrate synthase activity1.51E-03
59GO:0051537: 2 iron, 2 sulfur cluster binding1.75E-03
60GO:0043495: protein anchor2.02E-03
61GO:0004659: prenyltransferase activity2.02E-03
62GO:0005319: lipid transporter activity2.02E-03
63GO:0022891: substrate-specific transmembrane transporter activity2.02E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.02E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.02E-03
66GO:0004812: aminoacyl-tRNA ligase activity2.38E-03
67GO:0003959: NADPH dehydrogenase activity2.58E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor2.58E-03
69GO:0004356: glutamate-ammonia ligase activity2.58E-03
70GO:0004601: peroxidase activity2.77E-03
71GO:0016787: hydrolase activity2.87E-03
72GO:0004791: thioredoxin-disulfide reductase activity2.98E-03
73GO:0004130: cytochrome-c peroxidase activity3.19E-03
74GO:0016208: AMP binding3.19E-03
75GO:0016688: L-ascorbate peroxidase activity3.19E-03
76GO:0080030: methyl indole-3-acetate esterase activity3.19E-03
77GO:0004332: fructose-bisphosphate aldolase activity3.19E-03
78GO:0051082: unfolded protein binding3.62E-03
79GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.84E-03
80GO:0004124: cysteine synthase activity3.84E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.89E-03
82GO:0019899: enzyme binding4.53E-03
83GO:0008235: metalloexopeptidase activity4.53E-03
84GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.03E-03
85GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.03E-03
86GO:0008236: serine-type peptidase activity6.13E-03
87GO:0004337: geranyltranstransferase activity6.83E-03
88GO:0004222: metalloendopeptidase activity7.11E-03
89GO:0005384: manganese ion transmembrane transporter activity7.67E-03
90GO:0016491: oxidoreductase activity8.61E-03
91GO:0015386: potassium:proton antiporter activity9.46E-03
92GO:0004177: aminopeptidase activity9.46E-03
93GO:0044183: protein binding involved in protein folding9.46E-03
94GO:0004161: dimethylallyltranstransferase activity9.46E-03
95GO:0000049: tRNA binding1.04E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.14E-02
97GO:0008266: poly(U) RNA binding1.24E-02
98GO:0005509: calcium ion binding1.37E-02
99GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.43E-02
100GO:0004407: histone deacetylase activity1.56E-02
101GO:0015079: potassium ion transmembrane transporter activity1.68E-02
102GO:0046872: metal ion binding1.78E-02
103GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.91E-02
104GO:0003756: protein disulfide isomerase activity2.16E-02
105GO:0016740: transferase activity2.22E-02
106GO:0047134: protein-disulfide reductase activity2.29E-02
107GO:0003723: RNA binding2.55E-02
108GO:0019901: protein kinase binding2.82E-02
109GO:0048038: quinone binding2.96E-02
110GO:0004519: endonuclease activity3.02E-02
111GO:0008483: transaminase activity3.55E-02
112GO:0008237: metallopeptidase activity3.55E-02
113GO:0003743: translation initiation factor activity4.10E-02
114GO:0009931: calcium-dependent protein serine/threonine kinase activity4.16E-02
115GO:0004683: calmodulin-dependent protein kinase activity4.32E-02
116GO:0042802: identical protein binding4.46E-02
117GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.48E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.58E-69
2GO:0009535: chloroplast thylakoid membrane3.98E-36
3GO:0009941: chloroplast envelope8.25E-34
4GO:0009570: chloroplast stroma5.54E-31
5GO:0009579: thylakoid1.02E-25
6GO:0009543: chloroplast thylakoid lumen5.39E-20
7GO:0031977: thylakoid lumen2.64E-16
8GO:0009534: chloroplast thylakoid7.71E-14
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.95E-09
10GO:0030095: chloroplast photosystem II1.79E-06
11GO:0031969: chloroplast membrane2.35E-06
12GO:0009654: photosystem II oxygen evolving complex4.80E-06
13GO:0009523: photosystem II2.34E-05
14GO:0019898: extrinsic component of membrane2.34E-05
15GO:0005960: glycine cleavage complex3.21E-05
16GO:0010319: stromule4.46E-05
17GO:0042651: thylakoid membrane1.24E-04
18GO:0009533: chloroplast stromal thylakoid2.36E-04
19GO:0009782: photosystem I antenna complex2.97E-04
20GO:0043190: ATP-binding cassette (ABC) transporter complex2.97E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.97E-04
22GO:0009706: chloroplast inner membrane6.22E-04
23GO:0042170: plastid membrane6.50E-04
24GO:0010287: plastoglobule8.07E-04
25GO:0030076: light-harvesting complex1.14E-03
26GO:0048046: apoplast1.45E-03
27GO:0009346: citrate lyase complex1.51E-03
28GO:0005840: ribosome1.71E-03
29GO:0055035: plastid thylakoid membrane2.58E-03
30GO:0009512: cytochrome b6f complex2.58E-03
31GO:0005778: peroxisomal membrane4.40E-03
32GO:0016324: apical plasma membrane8.55E-03
33GO:0000311: plastid large ribosomal subunit1.04E-02
34GO:0009508: plastid chromosome1.14E-02
35GO:0016020: membrane1.15E-02
36GO:0000312: plastid small ribosomal subunit1.24E-02
37GO:0005875: microtubule associated complex1.45E-02
38GO:0022626: cytosolic ribosome1.55E-02
39GO:0015935: small ribosomal subunit1.79E-02
40GO:0009532: plastid stroma1.79E-02
41GO:0009536: plastid2.23E-02
42GO:0009522: photosystem I2.68E-02
43GO:0005759: mitochondrial matrix3.20E-02
44GO:0009295: nucleoid3.55E-02
45GO:0030529: intracellular ribonucleoprotein complex3.85E-02
46GO:0009707: chloroplast outer membrane4.65E-02
Gene type



Gene DE type