co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G15180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0042549: photosystem II stabilization	1.28E-05
8	GO:0043489: RNA stabilization	7.07E-05
9	GO:0000481: maturation of 5S rRNA	7.07E-05
10	GO:0033481: galacturonate biosynthetic process	7.07E-05
11	GO:0042371: vitamin K biosynthetic process	7.07E-05
12	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	7.07E-05
13	GO:0034337: RNA folding	7.07E-05
14	GO:0034757: negative regulation of iron ion transport	7.07E-05
15	GO:0048829: root cap development	7.72E-05
16	GO:0034755: iron ion transmembrane transport	1.70E-04
17	GO:0010271: regulation of chlorophyll catabolic process	1.70E-04
18	GO:0001736: establishment of planar polarity	1.70E-04
19	GO:0010270: photosystem II oxygen evolving complex assembly	1.70E-04
20	GO:0009768: photosynthesis, light harvesting in photosystem I	2.22E-04
21	GO:0003333: amino acid transmembrane transport	2.46E-04
22	GO:0080117: secondary growth	2.86E-04
23	GO:0006518: peptide metabolic process	2.86E-04
24	GO:0051176: positive regulation of sulfur metabolic process	2.86E-04
25	GO:0010087: phloem or xylem histogenesis	3.77E-04
26	GO:2001141: regulation of RNA biosynthetic process	4.15E-04
27	GO:0006564: L-serine biosynthetic process	7.00E-04
28	GO:0009435: NAD biosynthetic process	7.00E-04
29	GO:0010027: thylakoid membrane organization	7.13E-04
30	GO:0006828: manganese ion transport	8.57E-04
31	GO:0048831: regulation of shoot system development	8.57E-04
32	GO:0010190: cytochrome b6f complex assembly	8.57E-04
33	GO:0006596: polyamine biosynthetic process	8.57E-04
34	GO:0048759: xylem vessel member cell differentiation	8.57E-04
35	GO:0006751: glutathione catabolic process	8.57E-04
36	GO:0048827: phyllome development	8.57E-04
37	GO:0000470: maturation of LSU-rRNA	8.57E-04
38	GO:0018298: protein-chromophore linkage	9.18E-04
39	GO:0009658: chloroplast organization	1.01E-03
40	GO:0006694: steroid biosynthetic process	1.02E-03
41	GO:0048509: regulation of meristem development	1.02E-03
42	GO:0006865: amino acid transport	1.10E-03
43	GO:0009637: response to blue light	1.15E-03
44	GO:0050829: defense response to Gram-negative bacterium	1.19E-03
45	GO:0009645: response to low light intensity stimulus	1.19E-03
46	GO:0006400: tRNA modification	1.19E-03
47	GO:0030091: protein repair	1.37E-03
48	GO:0032508: DNA duplex unwinding	1.37E-03
49	GO:0010114: response to red light	1.47E-03
50	GO:0009926: auxin polar transport	1.47E-03
51	GO:0017004: cytochrome complex assembly	1.56E-03
52	GO:0009808: lignin metabolic process	1.56E-03
53	GO:0071482: cellular response to light stimulus	1.56E-03
54	GO:0009060: aerobic respiration	1.76E-03
55	GO:0009051: pentose-phosphate shunt, oxidative branch	1.76E-03
56	GO:0006098: pentose-phosphate shunt	1.76E-03
57	GO:0009098: leucine biosynthetic process	1.97E-03
58	GO:0043069: negative regulation of programmed cell death	2.19E-03
59	GO:0009773: photosynthetic electron transport in photosystem I	2.41E-03
60	GO:0009073: aromatic amino acid family biosynthetic process	2.41E-03
61	GO:0006879: cellular iron ion homeostasis	2.41E-03
62	GO:0006352: DNA-templated transcription, initiation	2.41E-03
63	GO:0048765: root hair cell differentiation	2.41E-03
64	GO:0006816: calcium ion transport	2.41E-03
65	GO:0010628: positive regulation of gene expression	2.88E-03
66	GO:0006006: glucose metabolic process	2.88E-03
67	GO:0010229: inflorescence development	2.88E-03
68	GO:0006094: gluconeogenesis	2.88E-03
69	GO:0010207: photosystem II assembly	3.12E-03
70	GO:0010540: basipetal auxin transport	3.12E-03
71	GO:0010143: cutin biosynthetic process	3.12E-03
72	GO:0009225: nucleotide-sugar metabolic process	3.37E-03
73	GO:0009409: response to cold	3.64E-03
74	GO:0009416: response to light stimulus	4.46E-03
75	GO:0016226: iron-sulfur cluster assembly	4.73E-03
76	GO:0071215: cellular response to abscisic acid stimulus	5.02E-03
77	GO:0009306: protein secretion	5.32E-03
78	GO:0070417: cellular response to cold	5.62E-03
79	GO:0009958: positive gravitropism	6.24E-03
80	GO:0048825: cotyledon development	6.89E-03
81	GO:0009826: unidimensional cell growth	7.09E-03
82	GO:0071554: cell wall organization or biogenesis	7.22E-03
83	GO:0016132: brassinosteroid biosynthetic process	7.22E-03
84	GO:0071805: potassium ion transmembrane transport	8.61E-03
85	GO:0009911: positive regulation of flower development	9.34E-03
86	GO:0001666: response to hypoxia	9.34E-03
87	GO:0010029: regulation of seed germination	9.71E-03
88	GO:0042128: nitrate assimilation	1.01E-02
89	GO:0015979: photosynthesis	1.04E-02
90	GO:0016311: dephosphorylation	1.09E-02
91	GO:0010311: lateral root formation	1.17E-02
92	GO:0000160: phosphorelay signal transduction system	1.17E-02
93	GO:0010218: response to far red light	1.21E-02
94	GO:0009834: plant-type secondary cell wall biogenesis	1.21E-02
95	GO:0055114: oxidation-reduction process	1.22E-02
96	GO:0009631: cold acclimation	1.25E-02
97	GO:0045087: innate immune response	1.33E-02
98	GO:0006839: mitochondrial transport	1.46E-02
99	GO:0006631: fatty acid metabolic process	1.50E-02
100	GO:0008643: carbohydrate transport	1.68E-02
101	GO:0009644: response to high light intensity	1.68E-02
102	GO:0009636: response to toxic substance	1.73E-02
103	GO:0042538: hyperosmotic salinity response	1.87E-02
104	GO:0009734: auxin-activated signaling pathway	1.91E-02
105	GO:0006813: potassium ion transport	1.97E-02
106	GO:0009736: cytokinin-activated signaling pathway	1.97E-02
107	GO:0009909: regulation of flower development	2.11E-02
108	GO:0006096: glycolytic process	2.21E-02
109	GO:0009624: response to nematode	2.53E-02
110	GO:0018105: peptidyl-serine phosphorylation	2.58E-02
111	GO:0006396: RNA processing	2.58E-02
112	GO:0009737: response to abscisic acid	2.83E-02
113	GO:0006633: fatty acid biosynthetic process	3.49E-02
114	GO:0009451: RNA modification	3.79E-02
115	GO:0009414: response to water deprivation	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0008987: quinolinate synthetase A activity	0.00E+00
2	GO:0010487: thermospermine synthase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0050614: delta24-sterol reductase activity	0.00E+00
6	GO:0010328: auxin influx transmembrane transporter activity	4.96E-06
7	GO:0016768: spermine synthase activity	7.07E-05
8	GO:0080132: fatty acid alpha-hydroxylase activity	7.07E-05
9	GO:0009884: cytokinin receptor activity	1.70E-04
10	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.70E-04
11	GO:0003839: gamma-glutamylcyclotransferase activity	1.70E-04
12	GO:0004617: phosphoglycerate dehydrogenase activity	1.70E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.70E-04
14	GO:0031409: pigment binding	1.79E-04
15	GO:0005528: FK506 binding	2.00E-04
16	GO:0015079: potassium ion transmembrane transporter activity	2.22E-04
17	GO:0050734: hydroxycinnamoyltransferase activity	2.86E-04
18	GO:0005034: osmosensor activity	2.86E-04
19	GO:0001872: (1->3)-beta-D-glucan binding	4.15E-04
20	GO:0050378: UDP-glucuronate 4-epimerase activity	5.53E-04
21	GO:0004659: prenyltransferase activity	5.53E-04
22	GO:0001053: plastid sigma factor activity	5.53E-04
23	GO:0010011: auxin binding	5.53E-04
24	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.53E-04
25	GO:0016987: sigma factor activity	5.53E-04
26	GO:0016168: chlorophyll binding	7.52E-04
27	GO:0004332: fructose-bisphosphate aldolase activity	8.57E-04
28	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.02E-03
29	GO:0019900: kinase binding	1.02E-03
30	GO:0051920: peroxiredoxin activity	1.02E-03
31	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.02E-03
32	GO:0051539: 4 iron, 4 sulfur cluster binding	1.30E-03
33	GO:0004033: aldo-keto reductase (NADP) activity	1.37E-03
34	GO:0016209: antioxidant activity	1.37E-03
35	GO:0015293: symporter activity	1.64E-03
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-03
37	GO:0051287: NAD binding	1.77E-03
38	GO:0005384: manganese ion transmembrane transporter activity	1.97E-03
39	GO:0005381: iron ion transmembrane transporter activity	1.97E-03
40	GO:0015171: amino acid transmembrane transporter activity	2.17E-03
41	GO:0004673: protein histidine kinase activity	2.19E-03
42	GO:0008047: enzyme activator activity	2.19E-03
43	GO:0015386: potassium:proton antiporter activity	2.41E-03
44	GO:0003824: catalytic activity	2.65E-03
45	GO:0046872: metal ion binding	2.87E-03
46	GO:0015095: magnesium ion transmembrane transporter activity	2.88E-03
47	GO:0031072: heat shock protein binding	2.88E-03
48	GO:0000155: phosphorelay sensor kinase activity	2.88E-03
49	GO:0008266: poly(U) RNA binding	3.12E-03
50	GO:0043424: protein histidine kinase binding	4.17E-03
51	GO:0008514: organic anion transmembrane transporter activity	5.32E-03
52	GO:0016740: transferase activity	5.73E-03
53	GO:0005516: calmodulin binding	7.48E-03
54	GO:0016788: hydrolase activity, acting on ester bonds	7.50E-03
55	GO:0016597: amino acid binding	8.97E-03
56	GO:0016413: O-acetyltransferase activity	8.97E-03
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.01E-02
58	GO:0030247: polysaccharide binding	1.05E-02
59	GO:0004683: calmodulin-dependent protein kinase activity	1.05E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.13E-02
61	GO:0042803: protein homodimerization activity	1.15E-02
62	GO:0004871: signal transducer activity	1.15E-02
63	GO:0004222: metalloendopeptidase activity	1.21E-02
64	GO:0005215: transporter activity	1.24E-02
65	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.25E-02
66	GO:0003993: acid phosphatase activity	1.37E-02
67	GO:0050661: NADP binding	1.46E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	1.68E-02
69	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.97E-02
70	GO:0051082: unfolded protein binding	2.53E-02
71	GO:0019843: rRNA binding	2.96E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.17E-02
73	GO:0042802: identical protein binding	4.42E-02
74	GO:0008168: methyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.00E-13
2	GO:0009535: chloroplast thylakoid membrane	2.88E-11
3	GO:0009941: chloroplast envelope	1.97E-10
4	GO:0009570: chloroplast stroma	1.15E-05
5	GO:0009782: photosystem I antenna complex	7.07E-05
6	GO:0030076: light-harvesting complex	1.59E-04
7	GO:0009579: thylakoid	1.04E-03
8	GO:0009986: cell surface	1.19E-03
9	GO:0016020: membrane	1.30E-03
10	GO:0031969: chloroplast membrane	1.32E-03
11	GO:0032040: small-subunit processome	2.64E-03
12	GO:0010287: plastoglobule	3.28E-03
13	GO:0009543: chloroplast thylakoid lumen	3.46E-03
14	GO:0005875: microtubule associated complex	3.63E-03
15	GO:0005770: late endosome	6.24E-03
16	GO:0009522: photosystem I	6.56E-03
17	GO:0009523: photosystem II	6.89E-03
18	GO:0032580: Golgi cisterna membrane	8.25E-03
19	GO:0016021: integral component of membrane	8.29E-03
20	GO:0010319: stromule	8.61E-03
21	GO:0030529: intracellular ribonucleoprotein complex	9.34E-03
22	GO:0031977: thylakoid lumen	1.50E-02
23	GO:0005886: plasma membrane	2.65E-02
24	GO:0009534: chloroplast thylakoid	2.90E-02
25	GO:0005768: endosome	4.36E-02
26	GO:0046658: anchored component of plasma membrane	4.55E-02