Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G14840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0006066: alcohol metabolic process0.00E+00
3GO:0045176: apical protein localization0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0090470: shoot organ boundary specification0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0007638: mechanosensory behavior0.00E+00
10GO:1905499: trichome papilla formation0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
13GO:0051493: regulation of cytoskeleton organization0.00E+00
14GO:0009658: chloroplast organization4.67E-08
15GO:0032544: plastid translation9.37E-06
16GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.92E-05
17GO:0006085: acetyl-CoA biosynthetic process5.13E-05
18GO:0010025: wax biosynthetic process7.90E-05
19GO:0042335: cuticle development2.27E-04
20GO:0048564: photosystem I assembly2.69E-04
21GO:0043489: RNA stabilization2.77E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process2.77E-04
23GO:0010442: guard cell morphogenesis2.77E-04
24GO:1904964: positive regulation of phytol biosynthetic process2.77E-04
25GO:0042759: long-chain fatty acid biosynthetic process2.77E-04
26GO:0042371: vitamin K biosynthetic process2.77E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway2.77E-04
28GO:0006629: lipid metabolic process3.20E-04
29GO:0042761: very long-chain fatty acid biosynthetic process4.74E-04
30GO:0052541: plant-type cell wall cellulose metabolic process6.09E-04
31GO:0006695: cholesterol biosynthetic process6.09E-04
32GO:1902326: positive regulation of chlorophyll biosynthetic process6.09E-04
33GO:0034755: iron ion transmembrane transport6.09E-04
34GO:0006568: tryptophan metabolic process6.09E-04
35GO:0010270: photosystem II oxygen evolving complex assembly6.09E-04
36GO:0006816: calcium ion transport6.38E-04
37GO:0006415: translational termination6.38E-04
38GO:0015979: photosynthesis9.04E-04
39GO:0010020: chloroplast fission9.28E-04
40GO:0010581: regulation of starch biosynthetic process9.88E-04
41GO:0010253: UDP-rhamnose biosynthetic process9.88E-04
42GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.88E-04
43GO:0090506: axillary shoot meristem initiation9.88E-04
44GO:0006241: CTP biosynthetic process1.41E-03
45GO:0006424: glutamyl-tRNA aminoacylation1.41E-03
46GO:0006165: nucleoside diphosphate phosphorylation1.41E-03
47GO:0006228: UTP biosynthetic process1.41E-03
48GO:0010088: phloem development1.41E-03
49GO:0043572: plastid fission1.41E-03
50GO:2001141: regulation of RNA biosynthetic process1.41E-03
51GO:0010371: regulation of gibberellin biosynthetic process1.41E-03
52GO:0007231: osmosensory signaling pathway1.41E-03
53GO:0009765: photosynthesis, light harvesting1.89E-03
54GO:0006183: GTP biosynthetic process1.89E-03
55GO:0033500: carbohydrate homeostasis1.89E-03
56GO:0042991: transcription factor import into nucleus1.89E-03
57GO:0016117: carotenoid biosynthetic process2.16E-03
58GO:0000413: protein peptidyl-prolyl isomerization2.33E-03
59GO:0032543: mitochondrial translation2.41E-03
60GO:0006564: L-serine biosynthetic process2.41E-03
61GO:0048359: mucilage metabolic process involved in seed coat development2.41E-03
62GO:0016120: carotene biosynthetic process2.41E-03
63GO:0045038: protein import into chloroplast thylakoid membrane2.41E-03
64GO:0016123: xanthophyll biosynthetic process2.41E-03
65GO:0006665: sphingolipid metabolic process2.41E-03
66GO:0042254: ribosome biogenesis2.44E-03
67GO:0009958: positive gravitropism2.51E-03
68GO:0048825: cotyledon development2.89E-03
69GO:0006412: translation2.95E-03
70GO:0000470: maturation of LSU-rRNA2.98E-03
71GO:0006555: methionine metabolic process2.98E-03
72GO:0010190: cytochrome b6f complex assembly2.98E-03
73GO:0003006: developmental process involved in reproduction2.98E-03
74GO:0006828: manganese ion transport2.98E-03
75GO:0032973: amino acid export2.98E-03
76GO:0006014: D-ribose metabolic process2.98E-03
77GO:0018258: protein O-linked glycosylation via hydroxyproline2.98E-03
78GO:0010405: arabinogalactan protein metabolic process2.98E-03
79GO:0048827: phyllome development2.98E-03
80GO:0042549: photosystem II stabilization2.98E-03
81GO:0009735: response to cytokinin3.31E-03
82GO:0042372: phylloquinone biosynthetic process3.58E-03
83GO:0010067: procambium histogenesis3.58E-03
84GO:0006694: steroid biosynthetic process3.58E-03
85GO:0048280: vesicle fusion with Golgi apparatus3.58E-03
86GO:0010019: chloroplast-nucleus signaling pathway3.58E-03
87GO:0043090: amino acid import4.23E-03
88GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.23E-03
89GO:0006400: tRNA modification4.23E-03
90GO:0010027: thylakoid membrane organization4.47E-03
91GO:0045292: mRNA cis splicing, via spliceosome4.90E-03
92GO:0010928: regulation of auxin mediated signaling pathway4.90E-03
93GO:0006869: lipid transport4.99E-03
94GO:0071482: cellular response to light stimulus5.62E-03
95GO:0019430: removal of superoxide radicals5.62E-03
96GO:0009657: plastid organization5.62E-03
97GO:0009808: lignin metabolic process5.62E-03
98GO:0018298: protein-chromophore linkage5.83E-03
99GO:0090305: nucleic acid phosphodiester bond hydrolysis6.37E-03
100GO:0080144: amino acid homeostasis6.37E-03
101GO:0045337: farnesyl diphosphate biosynthetic process6.37E-03
102GO:0033384: geranyl diphosphate biosynthetic process6.37E-03
103GO:0000373: Group II intron splicing6.37E-03
104GO:0015780: nucleotide-sugar transport6.37E-03
105GO:0009451: RNA modification6.58E-03
106GO:0009631: cold acclimation6.75E-03
107GO:0035999: tetrahydrofolate interconversion7.15E-03
108GO:1900865: chloroplast RNA modification7.15E-03
109GO:0010380: regulation of chlorophyll biosynthetic process7.15E-03
110GO:0009637: response to blue light7.40E-03
111GO:0006896: Golgi to vacuole transport7.97E-03
112GO:0048829: root cap development7.97E-03
113GO:0006949: syncytium formation7.97E-03
114GO:0010192: mucilage biosynthetic process7.97E-03
115GO:0006839: mitochondrial transport8.43E-03
116GO:0043085: positive regulation of catalytic activity8.82E-03
117GO:0009773: photosynthetic electron transport in photosystem I8.82E-03
118GO:0006879: cellular iron ion homeostasis8.82E-03
119GO:0008285: negative regulation of cell proliferation8.82E-03
120GO:0006352: DNA-templated transcription, initiation8.82E-03
121GO:0010114: response to red light9.55E-03
122GO:0008643: carbohydrate transport1.03E-02
123GO:0009826: unidimensional cell growth1.06E-02
124GO:0010229: inflorescence development1.06E-02
125GO:0010207: photosystem II assembly1.16E-02
126GO:0010223: secondary shoot formation1.16E-02
127GO:0010540: basipetal auxin transport1.16E-02
128GO:0009664: plant-type cell wall organization1.20E-02
129GO:0070588: calcium ion transmembrane transport1.25E-02
130GO:0009736: cytokinin-activated signaling pathway1.29E-02
131GO:0006813: potassium ion transport1.29E-02
132GO:0006071: glycerol metabolic process1.35E-02
133GO:0006508: proteolysis1.40E-02
134GO:0000027: ribosomal large subunit assembly1.46E-02
135GO:0006418: tRNA aminoacylation for protein translation1.56E-02
136GO:0010026: trichome differentiation1.56E-02
137GO:0009768: photosynthesis, light harvesting in photosystem I1.56E-02
138GO:0007017: microtubule-based process1.56E-02
139GO:0010073: meristem maintenance1.56E-02
140GO:0003333: amino acid transmembrane transport1.67E-02
141GO:0030245: cellulose catabolic process1.78E-02
142GO:0016226: iron-sulfur cluster assembly1.78E-02
143GO:0006730: one-carbon metabolic process1.78E-02
144GO:0080092: regulation of pollen tube growth1.78E-02
145GO:0045454: cell redox homeostasis1.84E-02
146GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.89E-02
147GO:0009411: response to UV1.89E-02
148GO:0040007: growth1.89E-02
149GO:0001944: vasculature development1.89E-02
150GO:0010227: floral organ abscission1.89E-02
151GO:0006396: RNA processing1.90E-02
152GO:0010091: trichome branching2.01E-02
153GO:0019722: calcium-mediated signaling2.01E-02
154GO:0010089: xylem development2.01E-02
155GO:0010214: seed coat development2.01E-02
156GO:0006457: protein folding2.09E-02
157GO:0042147: retrograde transport, endosome to Golgi2.13E-02
158GO:0010087: phloem or xylem histogenesis2.25E-02
159GO:0008360: regulation of cell shape2.37E-02
160GO:0055114: oxidation-reduction process2.46E-02
161GO:0007018: microtubule-based movement2.50E-02
162GO:0006623: protein targeting to vacuole2.63E-02
163GO:0019252: starch biosynthetic process2.63E-02
164GO:0042744: hydrogen peroxide catabolic process2.63E-02
165GO:0009790: embryo development2.69E-02
166GO:0080156: mitochondrial mRNA modification2.76E-02
167GO:0000302: response to reactive oxygen species2.76E-02
168GO:0006891: intra-Golgi vesicle-mediated transport2.76E-02
169GO:0016132: brassinosteroid biosynthetic process2.76E-02
170GO:0007264: small GTPase mediated signal transduction2.89E-02
171GO:0009828: plant-type cell wall loosening3.16E-02
172GO:0071805: potassium ion transmembrane transport3.30E-02
173GO:0007267: cell-cell signaling3.30E-02
174GO:0009911: positive regulation of flower development3.58E-02
175GO:0009734: auxin-activated signaling pathway3.67E-02
176GO:0009627: systemic acquired resistance3.87E-02
177GO:0015995: chlorophyll biosynthetic process4.02E-02
178GO:0006888: ER to Golgi vesicle-mediated transport4.02E-02
179GO:0071555: cell wall organization4.02E-02
180GO:0048481: plant ovule development4.33E-02
181GO:0030244: cellulose biosynthetic process4.33E-02
182GO:0009817: defense response to fungus, incompatible interaction4.33E-02
183GO:0010311: lateral root formation4.48E-02
184GO:0000160: phosphorelay signal transduction system4.48E-02
185GO:0009834: plant-type secondary cell wall biogenesis4.64E-02
186GO:0010218: response to far red light4.64E-02
187GO:0006865: amino acid transport4.95E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
3GO:0046577: long-chain-alcohol oxidase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0005048: signal sequence binding0.00E+00
10GO:0050614: delta24-sterol reductase activity0.00E+00
11GO:0019843: rRNA binding3.46E-08
12GO:0003878: ATP citrate synthase activity2.85E-05
13GO:0016149: translation release factor activity, codon specific2.85E-05
14GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.62E-04
15GO:0051920: peroxiredoxin activity1.62E-04
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.41E-04
17GO:0016209: antioxidant activity2.69E-04
18GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer2.77E-04
19GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity2.77E-04
20GO:0004425: indole-3-glycerol-phosphate synthase activity2.77E-04
21GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity2.77E-04
22GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.77E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.77E-04
24GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.77E-04
25GO:0009055: electron carrier activity3.71E-04
26GO:0003747: translation release factor activity3.99E-04
27GO:0008237: metallopeptidase activity4.66E-04
28GO:0010280: UDP-L-rhamnose synthase activity6.09E-04
29GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.09E-04
30GO:0016630: protochlorophyllide reductase activity6.09E-04
31GO:0050377: UDP-glucose 4,6-dehydratase activity6.09E-04
32GO:0008460: dTDP-glucose 4,6-dehydratase activity6.09E-04
33GO:0004617: phosphoglycerate dehydrogenase activity6.09E-04
34GO:0005089: Rho guanyl-nucleotide exchange factor activity6.38E-04
35GO:0070330: aromatase activity9.88E-04
36GO:0002161: aminoacyl-tRNA editing activity9.88E-04
37GO:0030267: glyoxylate reductase (NADP) activity9.88E-04
38GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.88E-04
39GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.88E-04
40GO:0005524: ATP binding1.37E-03
41GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.41E-03
42GO:0004550: nucleoside diphosphate kinase activity1.41E-03
43GO:0043023: ribosomal large subunit binding1.41E-03
44GO:0004176: ATP-dependent peptidase activity1.54E-03
45GO:0003735: structural constituent of ribosome1.88E-03
46GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.89E-03
47GO:0016987: sigma factor activity1.89E-03
48GO:0010328: auxin influx transmembrane transporter activity1.89E-03
49GO:0043495: protein anchor1.89E-03
50GO:0004659: prenyltransferase activity1.89E-03
51GO:0001053: plastid sigma factor activity1.89E-03
52GO:0009922: fatty acid elongase activity2.41E-03
53GO:0003959: NADPH dehydrogenase activity2.41E-03
54GO:0018685: alkane 1-monooxygenase activity2.41E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor2.41E-03
56GO:0004040: amidase activity2.41E-03
57GO:0016788: hydrolase activity, acting on ester bonds2.44E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity2.98E-03
59GO:0016208: AMP binding2.98E-03
60GO:0004130: cytochrome-c peroxidase activity2.98E-03
61GO:0016688: L-ascorbate peroxidase activity2.98E-03
62GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.58E-03
63GO:0015631: tubulin binding3.58E-03
64GO:0004747: ribokinase activity3.58E-03
65GO:0019899: enzyme binding4.23E-03
66GO:0016168: chlorophyll binding4.73E-03
67GO:0008312: 7S RNA binding4.90E-03
68GO:0052747: sinapyl alcohol dehydrogenase activity4.90E-03
69GO:0004033: aldo-keto reductase (NADP) activity4.90E-03
70GO:0008865: fructokinase activity4.90E-03
71GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.37E-03
72GO:0004337: geranyltranstransferase activity6.37E-03
73GO:0008889: glycerophosphodiester phosphodiesterase activity6.37E-03
74GO:0004222: metalloendopeptidase activity6.43E-03
75GO:0005381: iron ion transmembrane transporter activity7.15E-03
76GO:0047617: acyl-CoA hydrolase activity7.15E-03
77GO:0005384: manganese ion transmembrane transporter activity7.15E-03
78GO:0008047: enzyme activator activity7.97E-03
79GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity7.97E-03
80GO:0042802: identical protein binding8.67E-03
81GO:0004672: protein kinase activity8.74E-03
82GO:0004161: dimethylallyltranstransferase activity8.82E-03
83GO:0047372: acylglycerol lipase activity8.82E-03
84GO:0000049: tRNA binding9.70E-03
85GO:0045551: cinnamyl-alcohol dehydrogenase activity9.70E-03
86GO:0008289: lipid binding9.84E-03
87GO:0043621: protein self-association1.03E-02
88GO:0008081: phosphoric diester hydrolase activity1.06E-02
89GO:0004565: beta-galactosidase activity1.06E-02
90GO:0015095: magnesium ion transmembrane transporter activity1.06E-02
91GO:0031072: heat shock protein binding1.06E-02
92GO:0005262: calcium channel activity1.06E-02
93GO:0008266: poly(U) RNA binding1.16E-02
94GO:0031409: pigment binding1.35E-02
95GO:0003777: microtubule motor activity1.43E-02
96GO:0015171: amino acid transmembrane transporter activity1.43E-02
97GO:0004857: enzyme inhibitor activity1.46E-02
98GO:0005528: FK506 binding1.46E-02
99GO:0051536: iron-sulfur cluster binding1.46E-02
100GO:0015079: potassium ion transmembrane transporter activity1.56E-02
101GO:0008324: cation transmembrane transporter activity1.56E-02
102GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.58E-02
103GO:0052689: carboxylic ester hydrolase activity1.66E-02
104GO:0033612: receptor serine/threonine kinase binding1.67E-02
105GO:0019706: protein-cysteine S-palmitoyltransferase activity1.67E-02
106GO:0030599: pectinesterase activity1.73E-02
107GO:0008810: cellulase activity1.89E-02
108GO:0022891: substrate-specific transmembrane transporter activity1.89E-02
109GO:0016740: transferase activity1.91E-02
110GO:0008514: organic anion transmembrane transporter activity2.01E-02
111GO:0005102: receptor binding2.13E-02
112GO:0004812: aminoacyl-tRNA ligase activity2.13E-02
113GO:0046872: metal ion binding2.32E-02
114GO:0008080: N-acetyltransferase activity2.37E-02
115GO:0003924: GTPase activity2.40E-02
116GO:0005507: copper ion binding2.41E-02
117GO:0004791: thioredoxin-disulfide reductase activity2.50E-02
118GO:0005516: calmodulin binding2.61E-02
119GO:0004519: endonuclease activity2.66E-02
120GO:0004518: nuclease activity2.89E-02
121GO:0000156: phosphorelay response regulator activity3.02E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.02E-02
123GO:0016301: kinase activity3.13E-02
124GO:0016759: cellulose synthase activity3.16E-02
125GO:0016722: oxidoreductase activity, oxidizing metal ions3.30E-02
126GO:0005200: structural constituent of cytoskeleton3.30E-02
127GO:0008017: microtubule binding3.33E-02
128GO:0016597: amino acid binding3.44E-02
129GO:0005509: calcium ion binding3.58E-02
130GO:0004674: protein serine/threonine kinase activity3.69E-02
131GO:0009931: calcium-dependent protein serine/threonine kinase activity3.87E-02
132GO:0004683: calmodulin-dependent protein kinase activity4.02E-02
133GO:0008236: serine-type peptidase activity4.17E-02
134GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.79E-02
135GO:0004601: peroxidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0070971: endoplasmic reticulum exit site0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast1.93E-20
4GO:0009570: chloroplast stroma1.17E-16
5GO:0009941: chloroplast envelope1.96E-16
6GO:0031977: thylakoid lumen6.38E-10
7GO:0009535: chloroplast thylakoid membrane9.61E-10
8GO:0009543: chloroplast thylakoid lumen1.53E-09
9GO:0009579: thylakoid1.73E-07
10GO:0046658: anchored component of plasma membrane3.85E-07
11GO:0005886: plasma membrane2.52E-06
12GO:0009346: citrate lyase complex2.85E-05
13GO:0031225: anchored component of membrane3.46E-05
14GO:0009534: chloroplast thylakoid8.44E-05
15GO:0031969: chloroplast membrane1.33E-04
16GO:0009923: fatty acid elongase complex2.77E-04
17GO:0019898: extrinsic component of membrane3.05E-04
18GO:0080085: signal recognition particle, chloroplast targeting6.09E-04
19GO:0005874: microtubule6.74E-04
20GO:0030095: chloroplast photosystem II9.28E-04
21GO:0005875: microtubule associated complex1.15E-03
22GO:0005840: ribosome1.37E-03
23GO:0009654: photosystem II oxygen evolving complex1.40E-03
24GO:0042651: thylakoid membrane1.40E-03
25GO:0000793: condensed chromosome2.98E-03
26GO:0016020: membrane4.10E-03
27GO:0009533: chloroplast stromal thylakoid4.23E-03
28GO:0000794: condensed nuclear chromosome4.23E-03
29GO:0012507: ER to Golgi transport vesicle membrane4.90E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.62E-03
31GO:0009536: plastid6.15E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.37E-03
33GO:0045298: tubulin complex6.37E-03
34GO:0009505: plant-type cell wall6.42E-03
35GO:0048046: apoplast7.83E-03
36GO:0016324: apical plasma membrane7.97E-03
37GO:0000311: plastid large ribosomal subunit9.70E-03
38GO:0030659: cytoplasmic vesicle membrane1.16E-02
39GO:0030076: light-harvesting complex1.25E-02
40GO:0022625: cytosolic large ribosomal subunit1.56E-02
41GO:0016021: integral component of membrane1.61E-02
42GO:0009532: plastid stroma1.67E-02
43GO:0009706: chloroplast inner membrane1.84E-02
44GO:0005871: kinesin complex2.13E-02
45GO:0010287: plastoglobule2.19E-02
46GO:0005770: late endosome2.37E-02
47GO:0009522: photosystem I2.50E-02
48GO:0009523: photosystem II2.63E-02
49GO:0043231: intracellular membrane-bounded organelle2.71E-02
50GO:0005778: peroxisomal membrane3.30E-02
51GO:0010319: stromule3.30E-02
52GO:0009506: plasmodesma3.40E-02
53GO:0030529: intracellular ribonucleoprotein complex3.58E-02
54GO:0015934: large ribosomal subunit4.79E-02
Gene type



Gene DE type