Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G14270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0015805: S-adenosyl-L-methionine transport0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0042371: vitamin K biosynthetic process0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
18GO:0002184: cytoplasmic translational termination0.00E+00
19GO:0015979: photosynthesis3.77E-15
20GO:0006412: translation3.43E-11
21GO:0042254: ribosome biogenesis5.73E-10
22GO:0032544: plastid translation6.39E-09
23GO:0009658: chloroplast organization7.55E-09
24GO:0009735: response to cytokinin2.31E-07
25GO:0010027: thylakoid membrane organization6.78E-07
26GO:0009773: photosynthetic electron transport in photosystem I2.97E-06
27GO:0010207: photosystem II assembly7.28E-06
28GO:0010196: nonphotochemical quenching1.52E-05
29GO:0090391: granum assembly3.19E-05
30GO:0009657: plastid organization3.21E-05
31GO:0071482: cellular response to light stimulus3.21E-05
32GO:0010020: chloroplast fission1.67E-04
33GO:0010236: plastoquinone biosynthetic process1.85E-04
34GO:0015995: chlorophyll biosynthetic process2.38E-04
35GO:0010190: cytochrome b6f complex assembly2.63E-04
36GO:0042549: photosystem II stabilization2.63E-04
37GO:0061077: chaperone-mediated protein folding3.47E-04
38GO:0042372: phylloquinone biosynthetic process3.52E-04
39GO:0009443: pyridoxal 5'-phosphate salvage4.59E-04
40GO:0043489: RNA stabilization4.59E-04
41GO:1904966: positive regulation of vitamin E biosynthetic process4.59E-04
42GO:1904964: positive regulation of phytol biosynthetic process4.59E-04
43GO:0071588: hydrogen peroxide mediated signaling pathway4.59E-04
44GO:0006427: histidyl-tRNA aminoacylation4.59E-04
45GO:0006457: protein folding7.68E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process9.90E-04
47GO:0034755: iron ion transmembrane transport9.90E-04
48GO:0006423: cysteinyl-tRNA aminoacylation9.90E-04
49GO:0006568: tryptophan metabolic process9.90E-04
50GO:0030388: fructose 1,6-bisphosphate metabolic process9.90E-04
51GO:0010024: phytochromobilin biosynthetic process9.90E-04
52GO:0010270: photosystem II oxygen evolving complex assembly9.90E-04
53GO:0043039: tRNA aminoacylation9.90E-04
54GO:0009073: aromatic amino acid family biosynthetic process1.31E-03
55GO:0043085: positive regulation of catalytic activity1.31E-03
56GO:0006352: DNA-templated transcription, initiation1.31E-03
57GO:0006415: translational termination1.31E-03
58GO:0006000: fructose metabolic process1.61E-03
59GO:0006954: inflammatory response1.61E-03
60GO:0010581: regulation of starch biosynthetic process1.61E-03
61GO:0006788: heme oxidation1.61E-03
62GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.61E-03
63GO:0071492: cellular response to UV-A1.61E-03
64GO:0006696: ergosterol biosynthetic process1.61E-03
65GO:0006006: glucose metabolic process1.70E-03
66GO:0006094: gluconeogenesis1.70E-03
67GO:0018298: protein-chromophore linkage1.93E-03
68GO:0090351: seedling development2.15E-03
69GO:0006424: glutamyl-tRNA aminoacylation2.34E-03
70GO:0010088: phloem development2.34E-03
71GO:0016556: mRNA modification2.34E-03
72GO:0043572: plastid fission2.34E-03
73GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.34E-03
74GO:2001141: regulation of RNA biosynthetic process2.34E-03
75GO:0010371: regulation of gibberellin biosynthetic process2.34E-03
76GO:0009152: purine ribonucleotide biosynthetic process2.34E-03
77GO:0046653: tetrahydrofolate metabolic process2.34E-03
78GO:0009853: photorespiration2.61E-03
79GO:0006418: tRNA aminoacylation for protein translation2.93E-03
80GO:0009768: photosynthesis, light harvesting in photosystem I2.93E-03
81GO:0045727: positive regulation of translation3.14E-03
82GO:0015994: chlorophyll metabolic process3.14E-03
83GO:0071483: cellular response to blue light3.14E-03
84GO:0071486: cellular response to high light intensity3.14E-03
85GO:0045454: cell redox homeostasis3.69E-03
86GO:0080110: sporopollenin biosynthetic process4.03E-03
87GO:0032543: mitochondrial translation4.03E-03
88GO:0006564: L-serine biosynthetic process4.03E-03
89GO:0045038: protein import into chloroplast thylakoid membrane4.03E-03
90GO:0031365: N-terminal protein amino acid modification4.03E-03
91GO:0006461: protein complex assembly4.03E-03
92GO:0016117: carotenoid biosynthetic process4.54E-03
93GO:0042335: cuticle development4.91E-03
94GO:0000413: protein peptidyl-prolyl isomerization4.91E-03
95GO:0016554: cytidine to uridine editing4.99E-03
96GO:0006828: manganese ion transport4.99E-03
97GO:0032973: amino acid export4.99E-03
98GO:0000470: maturation of LSU-rRNA4.99E-03
99GO:0006810: transport5.57E-03
100GO:0042026: protein refolding6.02E-03
101GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.02E-03
102GO:0006458: 'de novo' protein folding6.02E-03
103GO:0010189: vitamin E biosynthetic process6.02E-03
104GO:0009854: oxidative photosynthetic carbon pathway6.02E-03
105GO:0010019: chloroplast-nucleus signaling pathway6.02E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.11E-03
107GO:0009645: response to low light intensity stimulus7.11E-03
108GO:0006400: tRNA modification7.11E-03
109GO:0009772: photosynthetic electron transport in photosystem II7.11E-03
110GO:0043090: amino acid import7.11E-03
111GO:0009819: drought recovery8.28E-03
112GO:0048564: photosystem I assembly8.28E-03
113GO:0019430: removal of superoxide radicals9.51E-03
114GO:0017004: cytochrome complex assembly9.51E-03
115GO:0006002: fructose 6-phosphate metabolic process9.51E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis1.08E-02
117GO:0006098: pentose-phosphate shunt1.08E-02
118GO:0080144: amino acid homeostasis1.08E-02
119GO:0000373: Group II intron splicing1.08E-02
120GO:0009051: pentose-phosphate shunt, oxidative branch1.08E-02
121GO:0016311: dephosphorylation1.18E-02
122GO:0042761: very long-chain fatty acid biosynthetic process1.22E-02
123GO:1900865: chloroplast RNA modification1.22E-02
124GO:0010380: regulation of chlorophyll biosynthetic process1.22E-02
125GO:0043067: regulation of programmed cell death1.22E-02
126GO:0006779: porphyrin-containing compound biosynthetic process1.22E-02
127GO:0006782: protoporphyrinogen IX biosynthetic process1.36E-02
128GO:0045036: protein targeting to chloroplast1.36E-02
129GO:0006949: syncytium formation1.36E-02
130GO:0009631: cold acclimation1.44E-02
131GO:0006816: calcium ion transport1.50E-02
132GO:0008285: negative regulation of cell proliferation1.50E-02
133GO:0006879: cellular iron ion homeostasis1.50E-02
134GO:0009750: response to fructose1.50E-02
135GO:0009637: response to blue light1.58E-02
136GO:0034599: cellular response to oxidative stress1.65E-02
137GO:0005983: starch catabolic process1.66E-02
138GO:0032259: methylation1.75E-02
139GO:0006839: mitochondrial transport1.80E-02
140GO:0010628: positive regulation of gene expression1.81E-02
141GO:0005986: sucrose biosynthetic process1.81E-02
142GO:0019253: reductive pentose-phosphate cycle1.98E-02
143GO:0006397: mRNA processing1.99E-02
144GO:0010114: response to red light2.04E-02
145GO:0009644: response to high light intensity2.21E-02
146GO:0010025: wax biosynthetic process2.32E-02
147GO:0000027: ribosomal large subunit assembly2.49E-02
148GO:0007010: cytoskeleton organization2.49E-02
149GO:0016575: histone deacetylation2.67E-02
150GO:0009695: jasmonic acid biosynthetic process2.67E-02
151GO:0010073: meristem maintenance2.67E-02
152GO:0006364: rRNA processing2.75E-02
153GO:0051603: proteolysis involved in cellular protein catabolic process2.85E-02
154GO:0031408: oxylipin biosynthetic process2.86E-02
155GO:0016226: iron-sulfur cluster assembly3.05E-02
156GO:0006730: one-carbon metabolic process3.05E-02
157GO:0030245: cellulose catabolic process3.05E-02
158GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.25E-02
159GO:0010227: floral organ abscission3.25E-02
160GO:0006096: glycolytic process3.26E-02
161GO:0010584: pollen exine formation3.45E-02
162GO:0009793: embryo development ending in seed dormancy3.73E-02
163GO:0006396: RNA processing4.03E-02
164GO:0006662: glycerol ether metabolic process4.07E-02
165GO:0010197: polar nucleus fusion4.07E-02
166GO:0007018: microtubule-based movement4.28E-02
167GO:0006814: sodium ion transport4.28E-02
168GO:0000302: response to reactive oxygen species4.72E-02
169GO:0016032: viral process4.95E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
13GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
16GO:0005048: signal sequence binding0.00E+00
17GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
18GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
19GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
20GO:0019843: rRNA binding2.79E-19
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.13E-14
22GO:0005528: FK506 binding2.05E-12
23GO:0003735: structural constituent of ribosome4.50E-11
24GO:0016149: translation release factor activity, codon specific6.89E-05
25GO:0016987: sigma factor activity1.20E-04
26GO:0004659: prenyltransferase activity1.20E-04
27GO:0001053: plastid sigma factor activity1.20E-04
28GO:0004045: aminoacyl-tRNA hydrolase activity1.20E-04
29GO:0008266: poly(U) RNA binding1.67E-04
30GO:0016168: chlorophyll binding1.98E-04
31GO:0051920: peroxiredoxin activity3.52E-04
32GO:0004831: tyrosine-tRNA ligase activity4.59E-04
33GO:0004821: histidine-tRNA ligase activity4.59E-04
34GO:0004321: fatty-acyl-CoA synthase activity4.59E-04
35GO:0005080: protein kinase C binding4.59E-04
36GO:0051996: squalene synthase activity4.59E-04
37GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.59E-04
38GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.59E-04
39GO:0030794: (S)-coclaurine-N-methyltransferase activity4.59E-04
40GO:0004425: indole-3-glycerol-phosphate synthase activity4.59E-04
41GO:0004033: aldo-keto reductase (NADP) activity5.66E-04
42GO:0016209: antioxidant activity5.66E-04
43GO:0050662: coenzyme binding7.27E-04
44GO:0003747: translation release factor activity8.26E-04
45GO:0016630: protochlorophyllide reductase activity9.90E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.90E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.90E-04
48GO:0047746: chlorophyllase activity9.90E-04
49GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.90E-04
50GO:0004617: phosphoglycerate dehydrogenase activity9.90E-04
51GO:0004817: cysteine-tRNA ligase activity9.90E-04
52GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.90E-04
53GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.90E-04
54GO:0008047: enzyme activator activity1.13E-03
55GO:0002161: aminoacyl-tRNA editing activity1.61E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.61E-03
57GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.61E-03
58GO:0070402: NADPH binding1.61E-03
59GO:0008864: formyltetrahydrofolate deformylase activity1.61E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.61E-03
61GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.61E-03
62GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.61E-03
63GO:0003723: RNA binding1.65E-03
64GO:0051082: unfolded protein binding1.66E-03
65GO:0031072: heat shock protein binding1.70E-03
66GO:0005509: calcium ion binding1.84E-03
67GO:0016788: hydrolase activity, acting on ester bonds1.90E-03
68GO:0048487: beta-tubulin binding2.34E-03
69GO:0016851: magnesium chelatase activity2.34E-03
70GO:0043023: ribosomal large subunit binding2.34E-03
71GO:0008097: 5S rRNA binding2.34E-03
72GO:0008508: bile acid:sodium symporter activity2.34E-03
73GO:0001872: (1->3)-beta-D-glucan binding2.34E-03
74GO:0031409: pigment binding2.39E-03
75GO:1990137: plant seed peroxidase activity3.14E-03
76GO:0043495: protein anchor3.14E-03
77GO:0004392: heme oxygenase (decyclizing) activity3.14E-03
78GO:0005319: lipid transporter activity3.14E-03
79GO:0004345: glucose-6-phosphate dehydrogenase activity3.14E-03
80GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.14E-03
81GO:0022891: substrate-specific transmembrane transporter activity3.85E-03
82GO:0003959: NADPH dehydrogenase activity4.03E-03
83GO:0016773: phosphotransferase activity, alcohol group as acceptor4.03E-03
84GO:0004040: amidase activity4.03E-03
85GO:0004812: aminoacyl-tRNA ligase activity4.54E-03
86GO:0004130: cytochrome-c peroxidase activity4.99E-03
87GO:0016208: AMP binding4.99E-03
88GO:0016688: L-ascorbate peroxidase activity4.99E-03
89GO:0004332: fructose-bisphosphate aldolase activity4.99E-03
90GO:0004791: thioredoxin-disulfide reductase activity5.70E-03
91GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.02E-03
92GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.02E-03
93GO:0009055: electron carrier activity6.03E-03
94GO:0008168: methyltransferase activity7.06E-03
95GO:0019899: enzyme binding7.11E-03
96GO:0008235: metalloexopeptidase activity7.11E-03
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.47E-03
98GO:0043022: ribosome binding8.28E-03
99GO:0008312: 7S RNA binding8.28E-03
100GO:0008237: metallopeptidase activity8.45E-03
101GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.51E-03
102GO:0016207: 4-coumarate-CoA ligase activity1.08E-02
103GO:0052689: carboxylic ester hydrolase activity1.21E-02
104GO:0005381: iron ion transmembrane transporter activity1.22E-02
105GO:0005384: manganese ion transmembrane transporter activity1.22E-02
106GO:0047617: acyl-CoA hydrolase activity1.22E-02
107GO:0004222: metalloendopeptidase activity1.37E-02
108GO:0042803: protein homodimerization activity1.46E-02
109GO:0015386: potassium:proton antiporter activity1.50E-02
110GO:0004177: aminopeptidase activity1.50E-02
111GO:0044183: protein binding involved in protein folding1.50E-02
112GO:0003729: mRNA binding1.51E-02
113GO:0000049: tRNA binding1.66E-02
114GO:0050661: NADP binding1.80E-02
115GO:0015095: magnesium ion transmembrane transporter activity1.81E-02
116GO:0004185: serine-type carboxypeptidase activity2.04E-02
117GO:0043621: protein self-association2.21E-02
118GO:0051537: 2 iron, 2 sulfur cluster binding2.21E-02
119GO:0051287: NAD binding2.47E-02
120GO:0051536: iron-sulfur cluster binding2.49E-02
121GO:0004407: histone deacetylase activity2.49E-02
122GO:0015079: potassium ion transmembrane transporter activity2.67E-02
123GO:0051087: chaperone binding2.67E-02
124GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.75E-02
125GO:0004176: ATP-dependent peptidase activity2.86E-02
126GO:0004601: peroxidase activity2.89E-02
127GO:0016491: oxidoreductase activity3.01E-02
128GO:0008810: cellulase activity3.25E-02
129GO:0047134: protein-disulfide reductase activity3.65E-02
130GO:0008080: N-acetyltransferase activity4.07E-02
131GO:0004518: nuclease activity4.95E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009571: proplastid stroma0.00E+00
6GO:0009507: chloroplast4.92E-104
7GO:0009570: chloroplast stroma5.03E-55
8GO:0009535: chloroplast thylakoid membrane3.56E-43
9GO:0009941: chloroplast envelope1.98E-40
10GO:0009579: thylakoid1.75E-31
11GO:0009543: chloroplast thylakoid lumen7.46E-31
12GO:0031977: thylakoid lumen3.88E-23
13GO:0009534: chloroplast thylakoid1.38E-19
14GO:0005840: ribosome1.08E-14
15GO:0009654: photosystem II oxygen evolving complex1.31E-08
16GO:0019898: extrinsic component of membrane1.62E-07
17GO:0031969: chloroplast membrane2.77E-07
18GO:0030095: chloroplast photosystem II7.28E-06
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.36E-05
20GO:0009523: photosystem II8.13E-05
21GO:0030529: intracellular ribonucleoprotein complex1.80E-04
22GO:0042651: thylakoid membrane3.05E-04
23GO:0009706: chloroplast inner membrane3.16E-04
24GO:0010287: plastoglobule4.35E-04
25GO:0009533: chloroplast stromal thylakoid4.53E-04
26GO:0009782: photosystem I antenna complex4.59E-04
27GO:0043190: ATP-binding cassette (ABC) transporter complex4.59E-04
28GO:0009547: plastid ribosome4.59E-04
29GO:0080085: signal recognition particle, chloroplast targeting9.90E-04
30GO:0046658: anchored component of plasma membrane1.39E-03
31GO:0000311: plastid large ribosomal subunit1.49E-03
32GO:0010007: magnesium chelatase complex1.61E-03
33GO:0030076: light-harvesting complex2.15E-03
34GO:0015934: large ribosomal subunit2.32E-03
35GO:0015935: small ribosomal subunit3.22E-03
36GO:0009532: plastid stroma3.22E-03
37GO:0009536: plastid3.64E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.51E-03
39GO:0005811: lipid particle9.51E-03
40GO:0005874: microtubule9.84E-03
41GO:0016020: membrane1.20E-02
42GO:0000312: plastid small ribosomal subunit1.98E-02
43GO:0031225: anchored component of membrane3.08E-02
44GO:0005871: kinesin complex3.65E-02
45GO:0022625: cytosolic large ribosomal subunit4.02E-02
46GO:0009522: photosystem I4.28E-02
Gene type



Gene DE type