co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G13930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0012502: induction of programmed cell death	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	6.99E-20
8	GO:0018298: protein-chromophore linkage	2.40E-12
9	GO:0009644: response to high light intensity	2.88E-11
10	GO:0009409: response to cold	5.18E-11
11	GO:0015979: photosynthesis	3.72E-09
12	GO:0009645: response to low light intensity stimulus	4.37E-09
13	GO:0010218: response to far red light	1.19E-08
14	GO:0009637: response to blue light	7.48E-07
15	GO:0009769: photosynthesis, light harvesting in photosystem II	8.51E-07
16	GO:0010114: response to red light	1.48E-06
17	GO:0007623: circadian rhythm	1.87E-06
18	GO:0009631: cold acclimation	1.75E-05
19	GO:0009269: response to desiccation	3.11E-05
20	GO:0009415: response to water	1.02E-04
21	GO:0080167: response to karrikin	1.26E-04
22	GO:0009414: response to water deprivation	1.35E-04
23	GO:0009609: response to symbiotic bacterium	1.46E-04
24	GO:0015812: gamma-aminobutyric acid transport	1.46E-04
25	GO:0032958: inositol phosphate biosynthetic process	1.46E-04
26	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.46E-04
27	GO:0009416: response to light stimulus	1.48E-04
28	GO:0009737: response to abscisic acid	2.25E-04
29	GO:0051170: nuclear import	3.33E-04
30	GO:0015857: uracil transport	3.33E-04
31	GO:1902884: positive regulation of response to oxidative stress	3.33E-04
32	GO:0015720: allantoin transport	3.33E-04
33	GO:0006883: cellular sodium ion homeostasis	3.33E-04
34	GO:0042542: response to hydrogen peroxide	4.24E-04
35	GO:1902448: positive regulation of shade avoidance	5.47E-04
36	GO:0006598: polyamine catabolic process	5.47E-04
37	GO:0071705: nitrogen compound transport	5.47E-04
38	GO:1901562: response to paraquat	5.47E-04
39	GO:0042538: hyperosmotic salinity response	5.96E-04
40	GO:0048511: rhythmic process	6.43E-04
41	GO:0009585: red, far-red light phototransduction	6.52E-04
42	GO:0010017: red or far-red light signaling pathway	7.02E-04
43	GO:0031936: negative regulation of chromatin silencing	7.83E-04
44	GO:1901332: negative regulation of lateral root development	7.83E-04
45	GO:0006020: inositol metabolic process	7.83E-04
46	GO:0010601: positive regulation of auxin biosynthetic process	7.83E-04
47	GO:0009765: photosynthesis, light harvesting	1.04E-03
48	GO:2000306: positive regulation of photomorphogenesis	1.04E-03
49	GO:0010600: regulation of auxin biosynthetic process	1.04E-03
50	GO:0010508: positive regulation of autophagy	1.04E-03
51	GO:1901002: positive regulation of response to salt stress	1.04E-03
52	GO:0030104: water homeostasis	1.04E-03
53	GO:0009687: abscisic acid metabolic process	1.04E-03
54	GO:0015743: malate transport	1.04E-03
55	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.31E-03
56	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.31E-03
57	GO:1901657: glycosyl compound metabolic process	1.44E-03
58	GO:0009408: response to heat	1.47E-03
59	GO:0045962: positive regulation of development, heterochronic	1.61E-03
60	GO:1900425: negative regulation of defense response to bacterium	1.61E-03
61	GO:0009635: response to herbicide	1.61E-03
62	GO:0010286: heat acclimation	1.62E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.93E-03
64	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.93E-03
65	GO:0010555: response to mannitol	1.93E-03
66	GO:0006950: response to stress	2.13E-03
67	GO:0048437: floral organ development	2.27E-03
68	GO:0010196: nonphotochemical quenching	2.27E-03
69	GO:0080111: DNA demethylation	2.27E-03
70	GO:1902074: response to salt	2.27E-03
71	GO:0010038: response to metal ion	2.27E-03
72	GO:0010161: red light signaling pathway	2.27E-03
73	GO:0007050: cell cycle arrest	2.27E-03
74	GO:0009817: defense response to fungus, incompatible interaction	2.36E-03
75	GO:0000160: phosphorelay signal transduction system	2.47E-03
76	GO:0010928: regulation of auxin mediated signaling pathway	2.63E-03
77	GO:0009704: de-etiolation	2.63E-03
78	GO:0016051: carbohydrate biosynthetic process	2.98E-03
79	GO:0010099: regulation of photomorphogenesis	3.00E-03
80	GO:0090333: regulation of stomatal closure	3.40E-03
81	GO:0030042: actin filament depolymerization	3.81E-03
82	GO:0010018: far-red light signaling pathway	3.81E-03
83	GO:2000280: regulation of root development	3.81E-03
84	GO:0005982: starch metabolic process	3.81E-03
85	GO:0009640: photomorphogenesis	3.83E-03
86	GO:0051707: response to other organism	3.83E-03
87	GO:0006351: transcription, DNA-templated	3.90E-03
88	GO:0006355: regulation of transcription, DNA-templated	4.08E-03
89	GO:0008643: carbohydrate transport	4.14E-03
90	GO:0010162: seed dormancy process	4.23E-03
91	GO:0055062: phosphate ion homeostasis	4.23E-03
92	GO:0009688: abscisic acid biosynthetic process	4.23E-03
93	GO:0009641: shade avoidance	4.23E-03
94	GO:0018119: peptidyl-cysteine S-nitrosylation	4.67E-03
95	GO:0055085: transmembrane transport	5.06E-03
96	GO:0016925: protein sumoylation	5.13E-03
97	GO:0050826: response to freezing	5.60E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
99	GO:0009767: photosynthetic electron transport chain	5.60E-03
100	GO:0010207: photosystem II assembly	6.09E-03
101	GO:0007015: actin filament organization	6.09E-03
102	GO:0009266: response to temperature stimulus	6.09E-03
103	GO:0090351: seedling development	6.59E-03
104	GO:0042753: positive regulation of circadian rhythm	7.10E-03
105	GO:0016575: histone deacetylation	8.18E-03
106	GO:0003333: amino acid transmembrane transport	8.73E-03
107	GO:0010431: seed maturation	8.73E-03
108	GO:0071215: cellular response to abscisic acid stimulus	9.89E-03
109	GO:0045492: xylan biosynthetic process	1.05E-02
110	GO:0008284: positive regulation of cell proliferation	1.11E-02
111	GO:0042631: cellular response to water deprivation	1.17E-02
112	GO:0006814: sodium ion transport	1.30E-02
113	GO:0042752: regulation of circadian rhythm	1.30E-02
114	GO:0010228: vegetative to reproductive phase transition of meristem	1.33E-02
115	GO:0009556: microsporogenesis	1.37E-02
116	GO:0009735: response to cytokinin	1.38E-02
117	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.42E-02
118	GO:0000302: response to reactive oxygen species	1.43E-02
119	GO:0009639: response to red or far red light	1.64E-02
120	GO:0006914: autophagy	1.64E-02
121	GO:0006810: transport	1.83E-02
122	GO:0045893: positive regulation of transcription, DNA-templated	1.85E-02
123	GO:0016126: sterol biosynthetic process	1.86E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.94E-02
125	GO:0010029: regulation of seed germination	1.94E-02
126	GO:0006974: cellular response to DNA damage stimulus	2.01E-02
127	GO:0015995: chlorophyll biosynthetic process	2.09E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.09E-02
129	GO:0048573: photoperiodism, flowering	2.09E-02
130	GO:0006970: response to osmotic stress	2.12E-02
131	GO:0048481: plant ovule development	2.25E-02
132	GO:0010119: regulation of stomatal movement	2.49E-02
133	GO:0007568: aging	2.49E-02
134	GO:0010200: response to chitin	2.53E-02
135	GO:0006839: mitochondrial transport	2.92E-02
136	GO:0045892: negative regulation of transcription, DNA-templated	2.97E-02
137	GO:0032259: methylation	3.45E-02
138	GO:0009965: leaf morphogenesis	3.47E-02
139	GO:0006629: lipid metabolic process	3.60E-02
140	GO:0000165: MAPK cascade	3.65E-02
141	GO:0006812: cation transport	3.75E-02
142	GO:0051603: proteolysis involved in cellular protein catabolic process	4.04E-02
143	GO:0009553: embryo sac development	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
6	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
7	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
8	GO:0031409: pigment binding	4.97E-18
9	GO:0016168: chlorophyll binding	1.10E-14
10	GO:0005253: anion channel activity	1.71E-05
11	GO:0005515: protein binding	6.10E-05
12	GO:0000828: inositol hexakisphosphate kinase activity	1.46E-04
13	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.46E-04
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.46E-04
15	GO:0000829: inositol heptakisphosphate kinase activity	1.46E-04
16	GO:0080079: cellobiose glucosidase activity	1.46E-04
17	GO:0015180: L-alanine transmembrane transporter activity	3.33E-04
18	GO:0005274: allantoin uptake transmembrane transporter activity	3.33E-04
19	GO:0047216: inositol 3-alpha-galactosyltransferase activity	3.33E-04
20	GO:0046592: polyamine oxidase activity	5.47E-04
21	GO:0019948: SUMO activating enzyme activity	5.47E-04
22	GO:0000254: C-4 methylsterol oxidase activity	7.83E-04
23	GO:0015181: arginine transmembrane transporter activity	7.83E-04
24	GO:0015189: L-lysine transmembrane transporter activity	7.83E-04
25	GO:0015210: uracil transmembrane transporter activity	1.04E-03
26	GO:0005313: L-glutamate transmembrane transporter activity	1.04E-03
27	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.31E-03
28	GO:0000156: phosphorelay response regulator activity	1.44E-03
29	GO:0004629: phospholipase C activity	1.61E-03
30	GO:0015562: efflux transmembrane transporter activity	1.61E-03
31	GO:0005247: voltage-gated chloride channel activity	1.61E-03
32	GO:2001070: starch binding	1.61E-03
33	GO:0004435: phosphatidylinositol phospholipase C activity	1.93E-03
34	GO:0046872: metal ion binding	1.95E-03
35	GO:0102483: scopolin beta-glucosidase activity	2.13E-03
36	GO:0015140: malate transmembrane transporter activity	2.27E-03
37	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.00E-03
38	GO:0005215: transporter activity	3.16E-03
39	GO:0008422: beta-glucosidase activity	3.25E-03
40	GO:0000989: transcription factor activity, transcription factor binding	3.40E-03
41	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.40E-03
42	GO:0005198: structural molecule activity	4.30E-03
43	GO:0047372: acylglycerol lipase activity	4.67E-03
44	GO:0005315: inorganic phosphate transmembrane transporter activity	5.60E-03
45	GO:0008131: primary amine oxidase activity	6.09E-03
46	GO:0003712: transcription cofactor activity	6.59E-03
47	GO:0003779: actin binding	7.11E-03
48	GO:0051536: iron-sulfur cluster binding	7.63E-03
49	GO:0004407: histone deacetylase activity	7.63E-03
50	GO:0008324: cation transmembrane transporter activity	8.18E-03
51	GO:0051087: chaperone binding	8.18E-03
52	GO:0004707: MAP kinase activity	8.73E-03
53	GO:0008514: organic anion transmembrane transporter activity	1.05E-02
54	GO:0015297: antiporter activity	1.21E-02
55	GO:0005351: sugar:proton symporter activity	1.24E-02
56	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.53E-02
57	GO:0008168: methyltransferase activity	1.89E-02
58	GO:0008375: acetylglucosaminyltransferase activity	2.01E-02
59	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.20E-02
60	GO:0061630: ubiquitin protein ligase activity	2.57E-02
61	GO:0003993: acid phosphatase activity	2.75E-02
62	GO:0042393: histone binding	2.92E-02
63	GO:0016787: hydrolase activity	3.19E-02
64	GO:0015293: symporter activity	3.47E-02
65	GO:0008270: zinc ion binding	3.51E-02
66	GO:0015171: amino acid transmembrane transporter activity	4.24E-02
67	GO:0043565: sequence-specific DNA binding	4.35E-02
68	GO:0045735: nutrient reservoir activity	4.44E-02
69	GO:0003677: DNA binding	4.60E-02
70	GO:0022857: transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009522: photosystem I	5.99E-16
2	GO:0030076: light-harvesting complex	6.35E-16
3	GO:0010287: plastoglobule	4.31E-13
4	GO:0009579: thylakoid	8.25E-11
5	GO:0009534: chloroplast thylakoid	1.50E-09
6	GO:0009535: chloroplast thylakoid membrane	1.41E-08
7	GO:0009523: photosystem II	5.44E-08
8	GO:0009941: chloroplast envelope	9.45E-07
9	GO:0009517: PSII associated light-harvesting complex II	1.71E-05
10	GO:0042651: thylakoid membrane	2.65E-05
11	GO:0009783: photosystem II antenna complex	1.46E-04
12	GO:0016021: integral component of membrane	1.94E-04
13	GO:0043036: starch grain	3.33E-04
14	GO:0015629: actin cytoskeleton	7.64E-04
15	GO:0009507: chloroplast	1.03E-03
16	GO:0009898: cytoplasmic side of plasma membrane	1.04E-03
17	GO:0032586: protein storage vacuole membrane	1.04E-03
18	GO:0030127: COPII vesicle coat	1.61E-03
19	GO:0034707: chloride channel complex	1.61E-03
20	GO:0009533: chloroplast stromal thylakoid	2.27E-03
21	GO:0000326: protein storage vacuole	3.00E-03
22	GO:0016020: membrane	3.28E-03
23	GO:0010494: cytoplasmic stress granule	3.40E-03
24	GO:0030095: chloroplast photosystem II	6.09E-03
25	GO:0009654: photosystem II oxygen evolving complex	8.18E-03
26	GO:0005622: intracellular	8.42E-03
27	GO:0019898: extrinsic component of membrane	1.37E-02
28	GO:0005777: peroxisome	1.85E-02
29	GO:0000932: P-body	1.86E-02
30	GO:0005667: transcription factor complex	2.01E-02
31	GO:0005802: trans-Golgi network	2.80E-02
32	GO:0031977: thylakoid lumen	3.01E-02
33	GO:0031966: mitochondrial membrane	3.75E-02
34	GO:0016607: nuclear speck	4.54E-02