co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G13250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:0045740: positive regulation of DNA replication	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0080094: response to trehalose-6-phosphate	0.00E+00
5	GO:0010430: fatty acid omega-oxidation	0.00E+00
6	GO:0009715: chalcone biosynthetic process	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0007155: cell adhesion	5.16E-06
10	GO:0007267: cell-cell signaling	2.84E-05
11	GO:0006546: glycine catabolic process	4.39E-05
12	GO:0044209: AMP salvage	7.01E-05
13	GO:0045454: cell redox homeostasis	1.49E-04
14	GO:0045490: pectin catabolic process	1.65E-04
15	GO:1901599: (-)-pinoresinol biosynthetic process	2.53E-04
16	GO:0000066: mitochondrial ornithine transport	2.53E-04
17	GO:0019510: S-adenosylhomocysteine catabolic process	2.53E-04
18	GO:0006169: adenosine salvage	2.53E-04
19	GO:0010442: guard cell morphogenesis	2.53E-04
20	GO:0071370: cellular response to gibberellin stimulus	2.53E-04
21	GO:0010583: response to cyclopentenone	3.07E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.59E-04
23	GO:2000123: positive regulation of stomatal complex development	5.59E-04
24	GO:0010424: DNA methylation on cytosine within a CG sequence	5.59E-04
25	GO:0052541: plant-type cell wall cellulose metabolic process	5.59E-04
26	GO:0009629: response to gravity	5.59E-04
27	GO:1903338: regulation of cell wall organization or biogenesis	5.59E-04
28	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.59E-04
29	GO:0033353: S-adenosylmethionine cycle	5.59E-04
30	GO:0060919: auxin influx	5.59E-04
31	GO:0018119: peptidyl-cysteine S-nitrosylation	5.62E-04
32	GO:0019253: reductive pentose-phosphate cycle	8.19E-04
33	GO:0006696: ergosterol biosynthetic process	9.07E-04
34	GO:0006065: UDP-glucuronate biosynthetic process	9.07E-04
35	GO:0006000: fructose metabolic process	9.07E-04
36	GO:0010581: regulation of starch biosynthetic process	9.07E-04
37	GO:0071555: cell wall organization	9.23E-04
38	GO:0043572: plastid fission	1.29E-03
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.29E-03
40	GO:0006166: purine ribonucleoside salvage	1.29E-03
41	GO:0007231: osmosensory signaling pathway	1.29E-03
42	GO:0006168: adenine salvage	1.29E-03
43	GO:0006730: one-carbon metabolic process	1.48E-03
44	GO:0009294: DNA mediated transformation	1.61E-03
45	GO:0009694: jasmonic acid metabolic process	1.73E-03
46	GO:0006542: glutamine biosynthetic process	1.73E-03
47	GO:0019676: ammonia assimilation cycle	1.73E-03
48	GO:0019464: glycine decarboxylation via glycine cleavage system	1.73E-03
49	GO:0009765: photosynthesis, light harvesting	1.73E-03
50	GO:0006085: acetyl-CoA biosynthetic process	1.73E-03
51	GO:0045727: positive regulation of translation	1.73E-03
52	GO:0033500: carbohydrate homeostasis	1.73E-03
53	GO:0031122: cytoplasmic microtubule organization	1.73E-03
54	GO:2000038: regulation of stomatal complex development	1.73E-03
55	GO:0019722: calcium-mediated signaling	1.75E-03
56	GO:0016117: carotenoid biosynthetic process	1.90E-03
57	GO:0055114: oxidation-reduction process	1.97E-03
58	GO:0016123: xanthophyll biosynthetic process	2.21E-03
59	GO:0032876: negative regulation of DNA endoreduplication	2.21E-03
60	GO:0010375: stomatal complex patterning	2.21E-03
61	GO:0016120: carotene biosynthetic process	2.21E-03
62	GO:0046686: response to cadmium ion	2.43E-03
63	GO:0006555: methionine metabolic process	2.72E-03
64	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.72E-03
65	GO:0006796: phosphate-containing compound metabolic process	2.72E-03
66	GO:0071554: cell wall organization or biogenesis	2.72E-03
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.83E-03
68	GO:0042742: defense response to bacterium	3.16E-03
69	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.27E-03
70	GO:0045926: negative regulation of growth	3.27E-03
71	GO:0009094: L-phenylalanine biosynthetic process	3.27E-03
72	GO:0017148: negative regulation of translation	3.27E-03
73	GO:0050790: regulation of catalytic activity	3.86E-03
74	GO:0007050: cell cycle arrest	3.86E-03
75	GO:0000082: G1/S transition of mitotic cell cycle	3.86E-03
76	GO:0016126: sterol biosynthetic process	3.92E-03
77	GO:0031540: regulation of anthocyanin biosynthetic process	4.48E-03
78	GO:0008610: lipid biosynthetic process	4.48E-03
79	GO:0006875: cellular metal ion homeostasis	4.48E-03
80	GO:0007389: pattern specification process	5.13E-03
81	GO:0006002: fructose 6-phosphate metabolic process	5.13E-03
82	GO:0019430: removal of superoxide radicals	5.13E-03
83	GO:0032544: plastid translation	5.13E-03
84	GO:0009813: flavonoid biosynthetic process	5.37E-03
85	GO:0010311: lateral root formation	5.37E-03
86	GO:0006754: ATP biosynthetic process	5.81E-03
87	GO:0048589: developmental growth	5.81E-03
88	GO:0016051: carbohydrate biosynthetic process	6.48E-03
89	GO:0035999: tetrahydrofolate interconversion	6.52E-03
90	GO:0006349: regulation of gene expression by genetic imprinting	6.52E-03
91	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.52E-03
92	GO:0010380: regulation of chlorophyll biosynthetic process	6.52E-03
93	GO:0006810: transport	6.73E-03
94	GO:0005975: carbohydrate metabolic process	7.18E-03
95	GO:0043069: negative regulation of programmed cell death	7.26E-03
96	GO:0048829: root cap development	7.26E-03
97	GO:0010192: mucilage biosynthetic process	7.26E-03
98	GO:0019538: protein metabolic process	7.26E-03
99	GO:0006839: mitochondrial transport	7.38E-03
100	GO:0006631: fatty acid metabolic process	7.70E-03
101	GO:0010216: maintenance of DNA methylation	8.04E-03
102	GO:0006816: calcium ion transport	8.04E-03
103	GO:0009773: photosynthetic electron transport in photosystem I	8.04E-03
104	GO:0043085: positive regulation of catalytic activity	8.04E-03
105	GO:0009807: lignan biosynthetic process	8.04E-03
106	GO:0000272: polysaccharide catabolic process	8.04E-03
107	GO:0009926: auxin polar transport	8.35E-03
108	GO:0045037: protein import into chloroplast stroma	8.83E-03
109	GO:0009658: chloroplast organization	9.41E-03
110	GO:0050826: response to freezing	9.66E-03
111	GO:0009725: response to hormone	9.66E-03
112	GO:0006094: gluconeogenesis	9.66E-03
113	GO:0009767: photosynthetic electron transport chain	9.66E-03
114	GO:0005986: sucrose biosynthetic process	9.66E-03
115	GO:0010102: lateral root morphogenesis	9.66E-03
116	GO:0048768: root hair cell tip growth	1.05E-02
117	GO:0010207: photosystem II assembly	1.05E-02
118	GO:0010020: chloroplast fission	1.05E-02
119	GO:0070588: calcium ion transmembrane transport	1.14E-02
120	GO:0009969: xyloglucan biosynthetic process	1.14E-02
121	GO:0009825: multidimensional cell growth	1.14E-02
122	GO:0005985: sucrose metabolic process	1.14E-02
123	GO:0009833: plant-type primary cell wall biogenesis	1.23E-02
124	GO:0006071: glycerol metabolic process	1.23E-02
125	GO:0006833: water transport	1.23E-02
126	GO:0007010: cytoskeleton organization	1.32E-02
127	GO:0048367: shoot system development	1.38E-02
128	GO:0010026: trichome differentiation	1.42E-02
129	GO:0009695: jasmonic acid biosynthetic process	1.42E-02
130	GO:0007017: microtubule-based process	1.42E-02
131	GO:0016998: cell wall macromolecule catabolic process	1.52E-02
132	GO:0031408: oxylipin biosynthetic process	1.52E-02
133	GO:0003333: amino acid transmembrane transport	1.52E-02
134	GO:0042545: cell wall modification	1.56E-02
135	GO:0080092: regulation of pollen tube growth	1.62E-02
136	GO:0030245: cellulose catabolic process	1.62E-02
137	GO:0009742: brassinosteroid mediated signaling pathway	1.71E-02
138	GO:0016042: lipid catabolic process	1.96E-02
139	GO:0006629: lipid metabolic process	2.03E-02
140	GO:0034220: ion transmembrane transport	2.05E-02
141	GO:0010051: xylem and phloem pattern formation	2.05E-02
142	GO:0042631: cellular response to water deprivation	2.05E-02
143	GO:0000271: polysaccharide biosynthetic process	2.05E-02
144	GO:0080022: primary root development	2.05E-02
145	GO:0009741: response to brassinosteroid	2.16E-02
146	GO:0045489: pectin biosynthetic process	2.16E-02
147	GO:0019252: starch biosynthetic process	2.39E-02
148	GO:0007264: small GTPase mediated signal transduction	2.63E-02
149	GO:0016032: viral process	2.63E-02
150	GO:0019761: glucosinolate biosynthetic process	2.63E-02
151	GO:1901657: glycosyl compound metabolic process	2.75E-02
152	GO:0010090: trichome morphogenesis	2.75E-02
153	GO:0007623: circadian rhythm	2.79E-02
154	GO:0009617: response to bacterium	3.33E-02
155	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.39E-02
156	GO:0010411: xyloglucan metabolic process	3.66E-02
157	GO:0009735: response to cytokinin	3.71E-02
158	GO:0016049: cell growth	3.80E-02
159	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
160	GO:0030244: cellulose biosynthetic process	3.93E-02
161	GO:0018298: protein-chromophore linkage	3.93E-02
162	GO:0048767: root hair elongation	4.08E-02
163	GO:0000160: phosphorelay signal transduction system	4.08E-02
164	GO:0009832: plant-type cell wall biogenesis	4.08E-02
165	GO:0009834: plant-type secondary cell wall biogenesis	4.22E-02
166	GO:0009611: response to wounding	4.25E-02
167	GO:0007568: aging	4.36E-02
168	GO:0009910: negative regulation of flower development	4.36E-02
169	GO:0048527: lateral root development	4.36E-02
170	GO:0006865: amino acid transport	4.51E-02
171	GO:0009867: jasmonic acid mediated signaling pathway	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
2	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0046905: phytoene synthase activity	0.00E+00
9	GO:0051920: peroxiredoxin activity	1.33E-08
10	GO:0016209: antioxidant activity	4.76E-08
11	GO:0030570: pectate lyase activity	1.33E-04
12	GO:0042349: guiding stereospecific synthesis activity	2.53E-04
13	GO:0030797: 24-methylenesterol C-methyltransferase activity	2.53E-04
14	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.53E-04
15	GO:0004560: alpha-L-fucosidase activity	2.53E-04
16	GO:0004013: adenosylhomocysteinase activity	2.53E-04
17	GO:0080132: fatty acid alpha-hydroxylase activity	2.53E-04
18	GO:0008568: microtubule-severing ATPase activity	2.53E-04
19	GO:0051996: squalene synthase activity	2.53E-04
20	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.53E-04
21	GO:0010313: phytochrome binding	2.53E-04
22	GO:0015088: copper uptake transmembrane transporter activity	2.53E-04
23	GO:0004001: adenosine kinase activity	2.53E-04
24	GO:0004618: phosphoglycerate kinase activity	5.59E-04
25	GO:0010297: heteropolysaccharide binding	5.59E-04
26	GO:0004047: aminomethyltransferase activity	5.59E-04
27	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	5.59E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.59E-04
29	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	5.59E-04
30	GO:0046593: mandelonitrile lyase activity	5.59E-04
31	GO:0000064: L-ornithine transmembrane transporter activity	5.59E-04
32	GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity	5.59E-04
33	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	5.59E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.59E-04
35	GO:0008967: phosphoglycolate phosphatase activity	5.59E-04
36	GO:0003979: UDP-glucose 6-dehydrogenase activity	9.07E-04
37	GO:0005504: fatty acid binding	9.07E-04
38	GO:0003913: DNA photolyase activity	9.07E-04
39	GO:0004148: dihydrolipoyl dehydrogenase activity	9.07E-04
40	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	9.07E-04
41	GO:0003878: ATP citrate synthase activity	1.29E-03
42	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.29E-03
43	GO:0048027: mRNA 5'-UTR binding	1.29E-03
44	GO:0003999: adenine phosphoribosyltransferase activity	1.29E-03
45	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	1.29E-03
46	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.29E-03
47	GO:0004659: prenyltransferase activity	1.73E-03
48	GO:0047769: arogenate dehydratase activity	1.73E-03
49	GO:0004664: prephenate dehydratase activity	1.73E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.73E-03
51	GO:0010328: auxin influx transmembrane transporter activity	1.73E-03
52	GO:0045430: chalcone isomerase activity	1.73E-03
53	GO:0004601: peroxidase activity	1.94E-03
54	GO:0004356: glutamate-ammonia ligase activity	2.21E-03
55	GO:0030599: pectinesterase activity	2.49E-03
56	GO:0019901: protein kinase binding	2.54E-03
57	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.72E-03
58	GO:0000210: NAD+ diphosphatase activity	2.72E-03
59	GO:0016462: pyrophosphatase activity	2.72E-03
60	GO:0042578: phosphoric ester hydrolase activity	2.72E-03
61	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.27E-03
62	GO:0051753: mannan synthase activity	3.27E-03
63	GO:0016832: aldehyde-lyase activity	3.27E-03
64	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.27E-03
65	GO:0016759: cellulose synthase activity	3.29E-03
66	GO:0005200: structural constituent of cytoskeleton	3.49E-03
67	GO:0016413: O-acetyltransferase activity	3.70E-03
68	GO:0003824: catalytic activity	3.80E-03
69	GO:0004427: inorganic diphosphatase activity	3.86E-03
70	GO:0009881: photoreceptor activity	3.86E-03
71	GO:0004564: beta-fructofuranosidase activity	4.48E-03
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.99E-03
73	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.81E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.81E-03
75	GO:0004575: sucrose alpha-glucosidase activity	6.52E-03
76	GO:0005381: iron ion transmembrane transporter activity	6.52E-03
77	GO:0008047: enzyme activator activity	7.26E-03
78	GO:0047372: acylglycerol lipase activity	8.04E-03
79	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.04E-03
80	GO:0008378: galactosyltransferase activity	8.83E-03
81	GO:0016788: hydrolase activity, acting on ester bonds	9.64E-03
82	GO:0005262: calcium channel activity	9.66E-03
83	GO:0004565: beta-galactosidase activity	9.66E-03
84	GO:0051287: NAD binding	1.01E-02
85	GO:0050660: flavin adenine dinucleotide binding	1.13E-02
86	GO:0045330: aspartyl esterase activity	1.25E-02
87	GO:0016757: transferase activity, transferring glycosyl groups	1.31E-02
88	GO:0004857: enzyme inhibitor activity	1.32E-02
89	GO:0045735: nutrient reservoir activity	1.34E-02
90	GO:0052689: carboxylic ester hydrolase activity	1.41E-02
91	GO:0051087: chaperone binding	1.42E-02
92	GO:0004176: ATP-dependent peptidase activity	1.52E-02
93	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.62E-02
94	GO:0016760: cellulose synthase (UDP-forming) activity	1.72E-02
95	GO:0008810: cellulase activity	1.72E-02
96	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.83E-02
97	GO:0016758: transferase activity, transferring hexosyl groups	1.97E-02
98	GO:0005507: copper ion binding	1.98E-02
99	GO:0004672: protein kinase activity	2.03E-02
100	GO:0016829: lyase activity	2.18E-02
101	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-02
102	GO:0050662: coenzyme binding	2.27E-02
103	GO:0004872: receptor activity	2.39E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.51E-02
105	GO:0048038: quinone binding	2.51E-02
106	GO:0004518: nuclease activity	2.63E-02
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
108	GO:0000156: phosphorelay response regulator activity	2.75E-02
109	GO:0008483: transaminase activity	3.00E-02
110	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.00E-02
111	GO:0008237: metallopeptidase activity	3.00E-02
112	GO:0016597: amino acid binding	3.13E-02
113	GO:0015250: water channel activity	3.26E-02
114	GO:0016887: ATPase activity	3.50E-02
115	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.66E-02
116	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
117	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.80E-02
118	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.22E-02
119	GO:0004222: metalloendopeptidase activity	4.22E-02
120	GO:0030145: manganese ion binding	4.36E-02
121	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.36E-02
122	GO:0050897: cobalt ion binding	4.36E-02
123	GO:0003746: translation elongation factor activity	4.66E-02
124	GO:0016491: oxidoreductase activity	4.92E-02
125	GO:0008422: beta-glucosidase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0048046: apoplast	2.66E-12
3	GO:0031225: anchored component of membrane	3.33E-07
4	GO:0009505: plant-type cell wall	4.53E-07
5	GO:0005576: extracellular region	1.88E-06
6	GO:0009570: chloroplast stroma	3.70E-06
7	GO:0009941: chloroplast envelope	1.27E-05
8	GO:0009579: thylakoid	5.43E-05
9	GO:0005794: Golgi apparatus	8.26E-05
10	GO:0009507: chloroplast	1.14E-04
11	GO:0009344: nitrite reductase complex [NAD(P)H]	2.53E-04
12	GO:0046658: anchored component of plasma membrane	2.86E-04
13	GO:0005886: plasma membrane	3.05E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.51E-04
15	GO:0010319: stromule	3.93E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.59E-04
17	GO:0005853: eukaryotic translation elongation factor 1 complex	9.07E-04
18	GO:0005618: cell wall	9.57E-04
19	GO:0009534: chloroplast thylakoid	1.14E-03
20	GO:0009654: photosystem II oxygen evolving complex	1.23E-03
21	GO:0005775: vacuolar lumen	1.29E-03
22	GO:0005960: glycine cleavage complex	1.29E-03
23	GO:0009346: citrate lyase complex	1.29E-03
24	GO:0031897: Tic complex	1.73E-03
25	GO:0000139: Golgi membrane	1.79E-03
26	GO:0009535: chloroplast thylakoid membrane	1.81E-03
27	GO:0016020: membrane	2.28E-03
28	GO:0009706: chloroplast inner membrane	2.69E-03
29	GO:0010168: ER body	2.72E-03
30	GO:0010287: plastoglobule	3.34E-03
31	GO:0009543: chloroplast thylakoid lumen	3.58E-03
32	GO:0009533: chloroplast stromal thylakoid	3.86E-03
33	GO:0009539: photosystem II reaction center	5.13E-03
34	GO:0009506: plasmodesma	5.15E-03
35	GO:0045298: tubulin complex	5.81E-03
36	GO:0000325: plant-type vacuole	5.91E-03
37	GO:0016324: apical plasma membrane	7.26E-03
38	GO:0030095: chloroplast photosystem II	1.05E-02
39	GO:0030176: integral component of endoplasmic reticulum membrane	1.14E-02
40	GO:0005875: microtubule associated complex	1.23E-02
41	GO:0005773: vacuole	1.37E-02
42	GO:0005802: trans-Golgi network	2.35E-02
43	GO:0019898: extrinsic component of membrane	2.39E-02
44	GO:0016021: integral component of membrane	2.46E-02
45	GO:0005768: endosome	2.84E-02
46	GO:0009536: plastid	4.45E-02