co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G13000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0006105: succinate metabolic process	0.00E+00
3	GO:0019484: beta-alanine catabolic process	0.00E+00
4	GO:0010378: temperature compensation of the circadian clock	0.00E+00
5	GO:0042344: indole glucosinolate catabolic process	7.09E-06
6	GO:0052544: defense response by callose deposition in cell wall	1.40E-05
7	GO:0000380: alternative mRNA splicing, via spliceosome	4.82E-05
8	GO:0046323: glucose import	1.34E-04
9	GO:0046167: glycerol-3-phosphate biosynthetic process	2.02E-04
10	GO:0009450: gamma-aminobutyric acid catabolic process	2.02E-04
11	GO:1990641: response to iron ion starvation	2.02E-04
12	GO:1902265: abscisic acid homeostasis	2.02E-04
13	GO:0009865: pollen tube adhesion	2.02E-04
14	GO:0071366: cellular response to indolebutyric acid stimulus	2.02E-04
15	GO:0006540: glutamate decarboxylation to succinate	2.02E-04
16	GO:0009737: response to abscisic acid	2.09E-04
17	GO:0009409: response to cold	2.34E-04
18	GO:0042742: defense response to bacterium	4.46E-04
19	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.52E-04
20	GO:0006611: protein export from nucleus	4.52E-04
21	GO:0010033: response to organic substance	4.52E-04
22	GO:0006641: triglyceride metabolic process	4.52E-04
23	GO:0009727: detection of ethylene stimulus	4.52E-04
24	GO:0006101: citrate metabolic process	4.52E-04
25	GO:0030187: melatonin biosynthetic process	4.52E-04
26	GO:0030003: cellular cation homeostasis	4.52E-04
27	GO:0006811: ion transport	4.84E-04
28	GO:0010043: response to zinc ion	5.14E-04
29	GO:0010119: regulation of stomatal movement	5.14E-04
30	GO:0045087: innate immune response	5.77E-04
31	GO:0002237: response to molecule of bacterial origin	6.01E-04
32	GO:0009651: response to salt stress	7.29E-04
33	GO:0030029: actin filament-based process	7.36E-04
34	GO:0006517: protein deglycosylation	7.36E-04
35	GO:0000055: ribosomal large subunit export from nucleus	7.36E-04
36	GO:0042256: mature ribosome assembly	7.36E-04
37	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.36E-04
38	GO:0006954: inflammatory response	7.36E-04
39	GO:0019563: glycerol catabolic process	7.36E-04
40	GO:1900140: regulation of seedling development	7.36E-04
41	GO:0006013: mannose metabolic process	7.36E-04
42	GO:0042542: response to hydrogen peroxide	7.55E-04
43	GO:0006882: cellular zinc ion homeostasis	1.05E-03
44	GO:0019438: aromatic compound biosynthetic process	1.05E-03
45	GO:0006624: vacuolar protein processing	1.05E-03
46	GO:0006020: inositol metabolic process	1.05E-03
47	GO:0006072: glycerol-3-phosphate metabolic process	1.05E-03
48	GO:0009113: purine nucleobase biosynthetic process	1.05E-03
49	GO:0015749: monosaccharide transport	1.05E-03
50	GO:0009399: nitrogen fixation	1.05E-03
51	GO:0009963: positive regulation of flavonoid biosynthetic process	1.05E-03
52	GO:0035428: hexose transmembrane transport	1.08E-03
53	GO:0006970: response to osmotic stress	1.32E-03
54	GO:0006542: glutamine biosynthetic process	1.40E-03
55	GO:0006646: phosphatidylethanolamine biosynthetic process	1.40E-03
56	GO:0009687: abscisic acid metabolic process	1.40E-03
57	GO:0015743: malate transport	1.40E-03
58	GO:0006536: glutamate metabolic process	1.40E-03
59	GO:0042273: ribosomal large subunit biogenesis	1.40E-03
60	GO:0010188: response to microbial phytotoxin	1.40E-03
61	GO:0006878: cellular copper ion homeostasis	1.40E-03
62	GO:0080167: response to karrikin	1.64E-03
63	GO:0048544: recognition of pollen	1.72E-03
64	GO:0007029: endoplasmic reticulum organization	1.78E-03
65	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.78E-03
66	GO:0043097: pyrimidine nucleoside salvage	1.78E-03
67	GO:0008654: phospholipid biosynthetic process	1.85E-03
68	GO:0015691: cadmium ion transport	2.19E-03
69	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.19E-03
70	GO:0042732: D-xylose metabolic process	2.19E-03
71	GO:0006206: pyrimidine nucleobase metabolic process	2.19E-03
72	GO:0000741: karyogamy	2.19E-03
73	GO:0050665: hydrogen peroxide biosynthetic process	2.19E-03
74	GO:0006468: protein phosphorylation	2.42E-03
75	GO:0010044: response to aluminum ion	3.09E-03
76	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.09E-03
77	GO:0071669: plant-type cell wall organization or biogenesis	3.09E-03
78	GO:0009396: folic acid-containing compound biosynthetic process	3.09E-03
79	GO:0007623: circadian rhythm	3.58E-03
80	GO:0006102: isocitrate metabolic process	3.59E-03
81	GO:0006644: phospholipid metabolic process	3.59E-03
82	GO:0009061: anaerobic respiration	3.59E-03
83	GO:0009819: drought recovery	3.59E-03
84	GO:0009690: cytokinin metabolic process	3.59E-03
85	GO:0006605: protein targeting	3.59E-03
86	GO:0009415: response to water	3.59E-03
87	GO:0006491: N-glycan processing	3.59E-03
88	GO:0032508: DNA duplex unwinding	3.59E-03
89	GO:0009817: defense response to fungus, incompatible interaction	3.71E-03
90	GO:0046686: response to cadmium ion	3.98E-03
91	GO:0009808: lignin metabolic process	4.10E-03
92	GO:0001510: RNA methylation	4.10E-03
93	GO:0006098: pentose-phosphate shunt	4.65E-03
94	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.65E-03
95	GO:0046916: cellular transition metal ion homeostasis	4.65E-03
96	GO:0006099: tricarboxylic acid cycle	4.90E-03
97	GO:0035999: tetrahydrofolate interconversion	5.21E-03
98	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.21E-03
99	GO:0008202: steroid metabolic process	5.21E-03
100	GO:0051555: flavonol biosynthetic process	5.80E-03
101	GO:0009970: cellular response to sulfate starvation	5.80E-03
102	GO:0006535: cysteine biosynthetic process from serine	5.80E-03
103	GO:0006995: cellular response to nitrogen starvation	5.80E-03
104	GO:0006816: calcium ion transport	6.41E-03
105	GO:0009682: induced systemic resistance	6.41E-03
106	GO:0007165: signal transduction	7.03E-03
107	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.04E-03
108	GO:0009723: response to ethylene	7.49E-03
109	GO:2000012: regulation of auxin polar transport	7.70E-03
110	GO:0006807: nitrogen compound metabolic process	7.70E-03
111	GO:0009809: lignin biosynthetic process	8.14E-03
112	GO:0006541: glutamine metabolic process	8.37E-03
113	GO:0007034: vacuolar transport	8.37E-03
114	GO:0009969: xyloglucan biosynthetic process	9.07E-03
115	GO:0005985: sucrose metabolic process	9.07E-03
116	GO:0010030: positive regulation of seed germination	9.07E-03
117	GO:0000162: tryptophan biosynthetic process	9.79E-03
118	GO:0009626: plant-type hypersensitive response	1.03E-02
119	GO:0006487: protein N-linked glycosylation	1.05E-02
120	GO:0019344: cysteine biosynthetic process	1.05E-02
121	GO:0006406: mRNA export from nucleus	1.05E-02
122	GO:0006825: copper ion transport	1.13E-02
123	GO:0006874: cellular calcium ion homeostasis	1.13E-02
124	GO:0006396: RNA processing	1.20E-02
125	GO:0031408: oxylipin biosynthetic process	1.21E-02
126	GO:0031348: negative regulation of defense response	1.29E-02
127	GO:0071456: cellular response to hypoxia	1.29E-02
128	GO:0019748: secondary metabolic process	1.29E-02
129	GO:0001944: vasculature development	1.37E-02
130	GO:0009625: response to insect	1.37E-02
131	GO:0071215: cellular response to abscisic acid stimulus	1.37E-02
132	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.54E-02
133	GO:0010501: RNA secondary structure unwinding	1.62E-02
134	GO:0010051: xylem and phloem pattern formation	1.62E-02
135	GO:0042631: cellular response to water deprivation	1.62E-02
136	GO:0000271: polysaccharide biosynthetic process	1.62E-02
137	GO:0080022: primary root development	1.62E-02
138	GO:0042391: regulation of membrane potential	1.62E-02
139	GO:0010197: polar nucleus fusion	1.71E-02
140	GO:0010182: sugar mediated signaling pathway	1.71E-02
141	GO:0006520: cellular amino acid metabolic process	1.71E-02
142	GO:0010154: fruit development	1.71E-02
143	GO:0006814: sodium ion transport	1.80E-02
144	GO:0042752: regulation of circadian rhythm	1.80E-02
145	GO:0009646: response to absence of light	1.80E-02
146	GO:0010183: pollen tube guidance	1.89E-02
147	GO:0009414: response to water deprivation	1.98E-02
148	GO:0006635: fatty acid beta-oxidation	1.99E-02
149	GO:0010150: leaf senescence	2.01E-02
150	GO:0010583: response to cyclopentenone	2.08E-02
151	GO:0071281: cellular response to iron ion	2.18E-02
152	GO:0009739: response to gibberellin	2.25E-02
153	GO:0019760: glucosinolate metabolic process	2.28E-02
154	GO:0010252: auxin homeostasis	2.28E-02
155	GO:0006914: autophagy	2.28E-02
156	GO:0010286: heat acclimation	2.38E-02
157	GO:0009617: response to bacterium	2.40E-02
158	GO:0009733: response to auxin	2.44E-02
159	GO:0051607: defense response to virus	2.48E-02
160	GO:0009735: response to cytokinin	2.48E-02
161	GO:0001666: response to hypoxia	2.58E-02
162	GO:0009738: abscisic acid-activated signaling pathway	2.66E-02
163	GO:0010029: regulation of seed germination	2.69E-02
164	GO:0016310: phosphorylation	2.78E-02
165	GO:0009627: systemic acquired resistance	2.80E-02
166	GO:0042128: nitrate assimilation	2.80E-02
167	GO:0009611: response to wounding	2.84E-02
168	GO:0006950: response to stress	2.90E-02
169	GO:0048573: photoperiodism, flowering	2.90E-02
170	GO:0035556: intracellular signal transduction	2.96E-02
171	GO:0008219: cell death	3.12E-02
172	GO:0030244: cellulose biosynthetic process	3.12E-02
173	GO:0048767: root hair elongation	3.23E-02
174	GO:0009832: plant-type cell wall biogenesis	3.23E-02
175	GO:0009834: plant-type secondary cell wall biogenesis	3.35E-02
176	GO:0010218: response to far red light	3.35E-02
177	GO:0009631: cold acclimation	3.46E-02
178	GO:0006810: transport	3.61E-02
179	GO:0009637: response to blue light	3.69E-02
180	GO:0005975: carbohydrate metabolic process	3.79E-02
181	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.99E-02
182	GO:0006508: proteolysis	4.03E-02
183	GO:0030001: metal ion transport	4.05E-02
184	GO:0016192: vesicle-mediated transport	4.06E-02
185	GO:0044550: secondary metabolite biosynthetic process	4.19E-02
186	GO:0055114: oxidation-reduction process	4.40E-02
187	GO:0051707: response to other organism	4.42E-02
188	GO:0009636: response to toxic substance	4.80E-02
189	GO:0006855: drug transmembrane transport	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
2	GO:0005272: sodium channel activity	0.00E+00
3	GO:0033799: myricetin 3'-O-methyltransferase activity	0.00E+00
4	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
5	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
6	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
7	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
8	GO:0047763: caffeate O-methyltransferase activity	0.00E+00
9	GO:0009045: xylose isomerase activity	0.00E+00
10	GO:0030744: luteolin O-methyltransferase activity	0.00E+00
11	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
12	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
13	GO:0004370: glycerol kinase activity	0.00E+00
14	GO:0030755: quercetin 3-O-methyltransferase activity	0.00E+00
15	GO:0005524: ATP binding	3.66E-05
16	GO:0004525: ribonuclease III activity	1.67E-04
17	GO:0009679: hexose:proton symporter activity	2.02E-04
18	GO:0035671: enone reductase activity	2.02E-04
19	GO:0046870: cadmium ion binding	2.02E-04
20	GO:0050200: plasmalogen synthase activity	2.02E-04
21	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.02E-04
22	GO:0003867: 4-aminobutyrate transaminase activity	2.02E-04
23	GO:0017096: acetylserotonin O-methyltransferase activity	2.02E-04
24	GO:0016301: kinase activity	2.79E-04
25	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	4.52E-04
26	GO:0032791: lead ion binding	4.52E-04
27	GO:0004609: phosphatidylserine decarboxylase activity	4.52E-04
28	GO:0003994: aconitate hydratase activity	4.52E-04
29	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.52E-04
30	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.52E-04
31	GO:0004839: ubiquitin activating enzyme activity	4.52E-04
32	GO:0038199: ethylene receptor activity	4.52E-04
33	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.52E-04
34	GO:0004329: formate-tetrahydrofolate ligase activity	4.52E-04
35	GO:0019200: carbohydrate kinase activity	4.52E-04
36	GO:0004352: glutamate dehydrogenase (NAD+) activity	4.52E-04
37	GO:0047209: coniferyl-alcohol glucosyltransferase activity	4.52E-04
38	GO:0050897: cobalt ion binding	5.14E-04
39	GO:0004096: catalase activity	7.36E-04
40	GO:0005047: signal recognition particle binding	7.36E-04
41	GO:0019829: cation-transporting ATPase activity	7.36E-04
42	GO:0017150: tRNA dihydrouridine synthase activity	7.36E-04
43	GO:0004383: guanylate cyclase activity	7.36E-04
44	GO:0005507: copper ion binding	8.30E-04
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.83E-04
46	GO:0043023: ribosomal large subunit binding	1.05E-03
47	GO:0051740: ethylene binding	1.05E-03
48	GO:0001653: peptide receptor activity	1.05E-03
49	GO:0048027: mRNA 5'-UTR binding	1.05E-03
50	GO:0015086: cadmium ion transmembrane transporter activity	1.05E-03
51	GO:0004108: citrate (Si)-synthase activity	1.05E-03
52	GO:0004834: tryptophan synthase activity	1.40E-03
53	GO:0004737: pyruvate decarboxylase activity	1.40E-03
54	GO:0005253: anion channel activity	1.40E-03
55	GO:0005355: glucose transmembrane transporter activity	1.72E-03
56	GO:0004356: glutamate-ammonia ligase activity	1.78E-03
57	GO:0010294: abscisic acid glucosyltransferase activity	1.78E-03
58	GO:0015145: monosaccharide transmembrane transporter activity	1.78E-03
59	GO:0008641: small protein activating enzyme activity	1.78E-03
60	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.78E-03
61	GO:0030976: thiamine pyrophosphate binding	2.19E-03
62	GO:0019137: thioglucosidase activity	2.19E-03
63	GO:0000293: ferric-chelate reductase activity	2.19E-03
64	GO:0004559: alpha-mannosidase activity	2.63E-03
65	GO:0004124: cysteine synthase activity	2.63E-03
66	GO:0051753: mannan synthase activity	2.63E-03
67	GO:0004849: uridine kinase activity	2.63E-03
68	GO:0070300: phosphatidic acid binding	2.63E-03
69	GO:0003730: mRNA 3'-UTR binding	2.63E-03
70	GO:0005261: cation channel activity	2.63E-03
71	GO:0015144: carbohydrate transmembrane transporter activity	2.98E-03
72	GO:0016831: carboxy-lyase activity	3.09E-03
73	GO:0015140: malate transmembrane transporter activity	3.09E-03
74	GO:0004620: phospholipase activity	3.09E-03
75	GO:0005351: sugar:proton symporter activity	3.47E-03
76	GO:0004672: protein kinase activity	3.54E-03
77	GO:0005337: nucleoside transmembrane transporter activity	3.59E-03
78	GO:0005267: potassium channel activity	4.10E-03
79	GO:0005375: copper ion transmembrane transporter activity	4.10E-03
80	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.65E-03
81	GO:0008422: beta-glucosidase activity	5.12E-03
82	GO:0004674: protein serine/threonine kinase activity	5.38E-03
83	GO:0008171: O-methyltransferase activity	5.80E-03
84	GO:0004673: protein histidine kinase activity	5.80E-03
85	GO:0047372: acylglycerol lipase activity	6.41E-03
86	GO:0000155: phosphorelay sensor kinase activity	7.70E-03
87	GO:0005262: calcium channel activity	7.70E-03
88	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.70E-03
89	GO:0004175: endopeptidase activity	8.37E-03
90	GO:0030552: cAMP binding	9.07E-03
91	GO:0030553: cGMP binding	9.07E-03
92	GO:0004970: ionotropic glutamate receptor activity	9.07E-03
93	GO:0005217: intracellular ligand-gated ion channel activity	9.07E-03
94	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.06E-02
95	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.06E-02
96	GO:0043424: protein histidine kinase binding	1.13E-02
97	GO:0005216: ion channel activity	1.13E-02
98	GO:0004707: MAP kinase activity	1.21E-02
99	GO:0016760: cellulose synthase (UDP-forming) activity	1.37E-02
100	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.50E-02
101	GO:0005249: voltage-gated potassium channel activity	1.62E-02
102	GO:0030551: cyclic nucleotide binding	1.62E-02
103	GO:0030170: pyridoxal phosphate binding	1.62E-02
104	GO:0005515: protein binding	2.07E-02
105	GO:0004197: cysteine-type endopeptidase activity	2.08E-02
106	GO:0000156: phosphorelay response regulator activity	2.18E-02
107	GO:0008194: UDP-glycosyltransferase activity	2.25E-02
108	GO:0016759: cellulose synthase activity	2.28E-02
109	GO:0016791: phosphatase activity	2.28E-02
110	GO:0005215: transporter activity	2.38E-02
111	GO:0005200: structural constituent of cytoskeleton	2.38E-02
112	GO:0042802: identical protein binding	2.56E-02
113	GO:0102483: scopolin beta-glucosidase activity	2.90E-02
114	GO:0004721: phosphoprotein phosphatase activity	2.90E-02
115	GO:0030247: polysaccharide binding	2.90E-02
116	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.01E-02
117	GO:0005096: GTPase activator activity	3.23E-02
118	GO:0030145: manganese ion binding	3.46E-02
119	GO:0016740: transferase activity	3.54E-02
120	GO:0003729: mRNA binding	3.68E-02
121	GO:0003697: single-stranded DNA binding	3.69E-02
122	GO:0004497: monooxygenase activity	3.86E-02
123	GO:0030246: carbohydrate binding	4.00E-02
124	GO:0020037: heme binding	4.00E-02
125	GO:0051539: 4 iron, 4 sulfur cluster binding	4.05E-02
126	GO:0004185: serine-type carboxypeptidase activity	4.42E-02
127	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	4.91E-06
3	GO:0016021: integral component of membrane	4.77E-05
4	GO:0005777: peroxisome	1.10E-04
5	GO:0016020: membrane	5.19E-04
6	GO:0005783: endoplasmic reticulum	6.85E-04
7	GO:0000323: lytic vacuole	1.05E-03
8	GO:0005776: autophagosome	1.40E-03
9	GO:0005829: cytosol	1.63E-03
10	GO:0005851: eukaryotic translation initiation factor 2B complex	2.19E-03
11	GO:0000815: ESCRT III complex	2.63E-03
12	GO:0030173: integral component of Golgi membrane	2.63E-03
13	GO:0030687: preribosome, large subunit precursor	3.09E-03
14	GO:0009705: plant-type vacuole membrane	3.58E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.10E-03
16	GO:0009506: plasmodesma	4.43E-03
17	GO:0005794: Golgi apparatus	4.70E-03
18	GO:0005768: endosome	4.96E-03
19	GO:0005773: vacuole	6.41E-03
20	GO:0005774: vacuolar membrane	6.75E-03
21	GO:0005618: cell wall	9.01E-03
22	GO:0010008: endosome membrane	9.95E-03
23	GO:0005737: cytoplasm	1.21E-02
24	GO:0005789: endoplasmic reticulum membrane	1.24E-02
25	GO:0031410: cytoplasmic vesicle	1.29E-02
26	GO:0005802: trans-Golgi network	1.45E-02
27	GO:0043231: intracellular membrane-bounded organelle	1.52E-02
28	GO:0031965: nuclear membrane	1.89E-02
29	GO:0048046: apoplast	2.05E-02
30	GO:0009505: plant-type cell wall	2.87E-02
31	GO:0000786: nucleosome	3.58E-02