GO Enrichment Analysis of Co-expressed Genes with
AT1G12800
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0017038: protein import | 0.00E+00 |
| 4 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 7.44E-08 |
| 6 | GO:0009772: photosynthetic electron transport in photosystem II | 3.42E-07 |
| 7 | GO:0010027: thylakoid membrane organization | 2.47E-06 |
| 8 | GO:0015979: photosynthesis | 5.63E-05 |
| 9 | GO:0006605: protein targeting | 5.73E-05 |
| 10 | GO:0048564: photosystem I assembly | 5.73E-05 |
| 11 | GO:0000373: Group II intron splicing | 8.98E-05 |
| 12 | GO:0042371: vitamin K biosynthetic process | 1.00E-04 |
| 13 | GO:0010028: xanthophyll cycle | 1.00E-04 |
| 14 | GO:0045717: negative regulation of fatty acid biosynthetic process | 2.36E-04 |
| 15 | GO:0018026: peptidyl-lysine monomethylation | 2.36E-04 |
| 16 | GO:0016122: xanthophyll metabolic process | 2.36E-04 |
| 17 | GO:0010289: homogalacturonan biosynthetic process | 2.36E-04 |
| 18 | GO:0006898: receptor-mediated endocytosis | 2.36E-04 |
| 19 | GO:0016045: detection of bacterium | 3.92E-04 |
| 20 | GO:0010359: regulation of anion channel activity | 3.92E-04 |
| 21 | GO:0046168: glycerol-3-phosphate catabolic process | 3.92E-04 |
| 22 | GO:0090391: granum assembly | 3.92E-04 |
| 23 | GO:1901332: negative regulation of lateral root development | 5.64E-04 |
| 24 | GO:0009413: response to flooding | 5.64E-04 |
| 25 | GO:0010371: regulation of gibberellin biosynthetic process | 5.64E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 5.64E-04 |
| 27 | GO:0006072: glycerol-3-phosphate metabolic process | 5.64E-04 |
| 28 | GO:0010109: regulation of photosynthesis | 7.50E-04 |
| 29 | GO:0015994: chlorophyll metabolic process | 7.50E-04 |
| 30 | GO:0006552: leucine catabolic process | 7.50E-04 |
| 31 | GO:0010236: plastoquinone biosynthetic process | 9.47E-04 |
| 32 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.47E-04 |
| 33 | GO:0010438: cellular response to sulfur starvation | 9.47E-04 |
| 34 | GO:0009451: RNA modification | 1.09E-03 |
| 35 | GO:0006574: valine catabolic process | 1.16E-03 |
| 36 | GO:0009759: indole glucosinolate biosynthetic process | 1.16E-03 |
| 37 | GO:0000470: maturation of LSU-rRNA | 1.16E-03 |
| 38 | GO:0009913: epidermal cell differentiation | 1.16E-03 |
| 39 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.16E-03 |
| 40 | GO:0042793: transcription from plastid promoter | 1.16E-03 |
| 41 | GO:0009082: branched-chain amino acid biosynthetic process | 1.38E-03 |
| 42 | GO:1901259: chloroplast rRNA processing | 1.38E-03 |
| 43 | GO:0042372: phylloquinone biosynthetic process | 1.38E-03 |
| 44 | GO:0010444: guard mother cell differentiation | 1.62E-03 |
| 45 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.62E-03 |
| 46 | GO:0010196: nonphotochemical quenching | 1.62E-03 |
| 47 | GO:0010492: maintenance of shoot apical meristem identity | 1.87E-03 |
| 48 | GO:0045292: mRNA cis splicing, via spliceosome | 1.87E-03 |
| 49 | GO:0006353: DNA-templated transcription, termination | 1.87E-03 |
| 50 | GO:0006783: heme biosynthetic process | 2.41E-03 |
| 51 | GO:0048507: meristem development | 2.41E-03 |
| 52 | GO:0010206: photosystem II repair | 2.41E-03 |
| 53 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.50E-03 |
| 54 | GO:0010205: photoinhibition | 2.70E-03 |
| 55 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.00E-03 |
| 56 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.31E-03 |
| 57 | GO:0046856: phosphatidylinositol dephosphorylation | 3.31E-03 |
| 58 | GO:0009773: photosynthetic electron transport in photosystem I | 3.31E-03 |
| 59 | GO:0052544: defense response by callose deposition in cell wall | 3.31E-03 |
| 60 | GO:0008285: negative regulation of cell proliferation | 3.31E-03 |
| 61 | GO:0002213: defense response to insect | 3.63E-03 |
| 62 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.63E-03 |
| 63 | GO:0010628: positive regulation of gene expression | 3.95E-03 |
| 64 | GO:0050826: response to freezing | 3.95E-03 |
| 65 | GO:0030048: actin filament-based movement | 3.95E-03 |
| 66 | GO:0090351: seedling development | 4.64E-03 |
| 67 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.00E-03 |
| 68 | GO:0000162: tryptophan biosynthetic process | 5.00E-03 |
| 69 | GO:0051017: actin filament bundle assembly | 5.37E-03 |
| 70 | GO:0010073: meristem maintenance | 5.75E-03 |
| 71 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.54E-03 |
| 72 | GO:0010227: floral organ abscission | 6.94E-03 |
| 73 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.94E-03 |
| 74 | GO:0080022: primary root development | 8.21E-03 |
| 75 | GO:0042335: cuticle development | 8.21E-03 |
| 76 | GO:0009646: response to absence of light | 9.10E-03 |
| 77 | GO:0048825: cotyledon development | 9.56E-03 |
| 78 | GO:0000302: response to reactive oxygen species | 1.00E-02 |
| 79 | GO:0016032: viral process | 1.05E-02 |
| 80 | GO:0010090: trichome morphogenesis | 1.10E-02 |
| 81 | GO:0009828: plant-type cell wall loosening | 1.15E-02 |
| 82 | GO:0009658: chloroplast organization | 1.18E-02 |
| 83 | GO:0010311: lateral root formation | 1.62E-02 |
| 84 | GO:0016051: carbohydrate biosynthetic process | 1.86E-02 |
| 85 | GO:0034599: cellular response to oxidative stress | 1.91E-02 |
| 86 | GO:0006631: fatty acid metabolic process | 2.10E-02 |
| 87 | GO:0009640: photomorphogenesis | 2.22E-02 |
| 88 | GO:0008152: metabolic process | 2.39E-02 |
| 89 | GO:0006855: drug transmembrane transport | 2.48E-02 |
| 90 | GO:0031347: regulation of defense response | 2.55E-02 |
| 91 | GO:0009664: plant-type cell wall organization | 2.61E-02 |
| 92 | GO:0006364: rRNA processing | 2.75E-02 |
| 93 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.81E-02 |
| 94 | GO:0048316: seed development | 3.17E-02 |
| 95 | GO:0005975: carbohydrate metabolic process | 3.34E-02 |
| 96 | GO:0009735: response to cytokinin | 3.51E-02 |
| 97 | GO:0006396: RNA processing | 3.61E-02 |
| 98 | GO:0009845: seed germination | 4.38E-02 |
| 99 | GO:0042744: hydrogen peroxide catabolic process | 4.54E-02 |
| 100 | GO:0006633: fatty acid biosynthetic process | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 8.78E-09 |
| 7 | GO:0005528: FK506 binding | 9.75E-06 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.00E-04 |
| 9 | GO:0045485: omega-6 fatty acid desaturase activity | 1.00E-04 |
| 10 | GO:0004856: xylulokinase activity | 1.00E-04 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.82E-04 |
| 12 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 3.92E-04 |
| 13 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 3.92E-04 |
| 14 | GO:0003723: RNA binding | 4.92E-04 |
| 15 | GO:0052656: L-isoleucine transaminase activity | 5.64E-04 |
| 16 | GO:0052654: L-leucine transaminase activity | 5.64E-04 |
| 17 | GO:0052655: L-valine transaminase activity | 5.64E-04 |
| 18 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 5.64E-04 |
| 19 | GO:0019843: rRNA binding | 7.13E-04 |
| 20 | GO:0004659: prenyltransferase activity | 7.50E-04 |
| 21 | GO:0016279: protein-lysine N-methyltransferase activity | 7.50E-04 |
| 22 | GO:0004084: branched-chain-amino-acid transaminase activity | 7.50E-04 |
| 23 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 9.47E-04 |
| 24 | GO:0004130: cytochrome-c peroxidase activity | 1.16E-03 |
| 25 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.16E-03 |
| 26 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.16E-03 |
| 27 | GO:0005515: protein binding | 1.47E-03 |
| 28 | GO:0043022: ribosome binding | 1.87E-03 |
| 29 | GO:0004525: ribonuclease III activity | 1.87E-03 |
| 30 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.87E-03 |
| 31 | GO:0047372: acylglycerol lipase activity | 3.31E-03 |
| 32 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 3.63E-03 |
| 33 | GO:0031072: heat shock protein binding | 3.95E-03 |
| 34 | GO:0009982: pseudouridine synthase activity | 3.95E-03 |
| 35 | GO:0016787: hydrolase activity | 4.10E-03 |
| 36 | GO:0003774: motor activity | 4.30E-03 |
| 37 | GO:0003714: transcription corepressor activity | 5.37E-03 |
| 38 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 6.54E-03 |
| 39 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 7.10E-03 |
| 40 | GO:0003756: protein disulfide isomerase activity | 7.35E-03 |
| 41 | GO:0010181: FMN binding | 9.10E-03 |
| 42 | GO:0016301: kinase activity | 9.35E-03 |
| 43 | GO:0004518: nuclease activity | 1.05E-02 |
| 44 | GO:0051015: actin filament binding | 1.10E-02 |
| 45 | GO:0016597: amino acid binding | 1.25E-02 |
| 46 | GO:0003746: translation elongation factor activity | 1.86E-02 |
| 47 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.97E-02 |
| 48 | GO:0004185: serine-type carboxypeptidase activity | 2.22E-02 |
| 49 | GO:0003824: catalytic activity | 2.23E-02 |
| 50 | GO:0043621: protein self-association | 2.35E-02 |
| 51 | GO:0004519: endonuclease activity | 2.36E-02 |
| 52 | GO:0005198: structural molecule activity | 2.41E-02 |
| 53 | GO:0051287: NAD binding | 2.55E-02 |
| 54 | GO:0016491: oxidoreductase activity | 2.80E-02 |
| 55 | GO:0016887: ATPase activity | 3.36E-02 |
| 56 | GO:0016874: ligase activity | 3.38E-02 |
| 57 | GO:0051082: unfolded protein binding | 3.53E-02 |
| 58 | GO:0008026: ATP-dependent helicase activity | 3.68E-02 |
| 59 | GO:0005524: ATP binding | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.14E-21 |
| 3 | GO:0009534: chloroplast thylakoid | 1.91E-19 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.04E-18 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 2.19E-12 |
| 6 | GO:0009570: chloroplast stroma | 3.44E-12 |
| 7 | GO:0031977: thylakoid lumen | 1.15E-10 |
| 8 | GO:0010007: magnesium chelatase complex | 1.79E-09 |
| 9 | GO:0009941: chloroplast envelope | 4.23E-07 |
| 10 | GO:0030095: chloroplast photosystem II | 5.46E-06 |
| 11 | GO:0009579: thylakoid | 6.60E-05 |
| 12 | GO:0009515: granal stacked thylakoid | 1.00E-04 |
| 13 | GO:0009508: plastid chromosome | 2.03E-04 |
| 14 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.36E-04 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 3.58E-04 |
| 16 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 5.64E-04 |
| 17 | GO:0042646: plastid nucleoid | 5.64E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 7.34E-04 |
| 19 | GO:0009295: nucleoid | 9.96E-04 |
| 20 | GO:0016363: nuclear matrix | 1.38E-03 |
| 21 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.14E-03 |
| 22 | GO:0042644: chloroplast nucleoid | 2.41E-03 |
| 23 | GO:0016459: myosin complex | 3.00E-03 |
| 24 | GO:0009706: chloroplast inner membrane | 4.42E-03 |
| 25 | GO:0015629: actin cytoskeleton | 6.94E-03 |
| 26 | GO:0009523: photosystem II | 9.56E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 1.30E-02 |
| 28 | GO:0031969: chloroplast membrane | 1.47E-02 |
| 29 | GO:0005840: ribosome | 2.11E-02 |
| 30 | GO:0043231: intracellular membrane-bounded organelle | 2.39E-02 |
| 31 | GO:0005856: cytoskeleton | 2.41E-02 |
| 32 | GO:0016020: membrane | 2.86E-02 |
| 33 | GO:0010008: endosome membrane | 3.17E-02 |
| 34 | GO:0010287: plastoglobule | 3.99E-02 |