co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0060416: response to growth hormone	0.00E+00
4	GO:0015739: sialic acid transport	0.00E+00
5	GO:0015976: carbon utilization	2.72E-07
6	GO:0006810: transport	7.13E-06
7	GO:0009773: photosynthetic electron transport in photosystem I	2.38E-05
8	GO:0006183: GTP biosynthetic process	4.39E-05
9	GO:2000122: negative regulation of stomatal complex development	4.39E-05
10	GO:0010037: response to carbon dioxide	4.39E-05
11	GO:0010411: xyloglucan metabolic process	4.94E-05
12	GO:0071555: cell wall organization	5.37E-05
13	GO:0042335: cuticle development	1.89E-04
14	GO:0008610: lipid biosynthetic process	2.35E-04
15	GO:0009704: de-etiolation	2.35E-04
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.53E-04
17	GO:0051180: vitamin transport	2.53E-04
18	GO:0030974: thiamine pyrophosphate transport	2.53E-04
19	GO:0046520: sphingoid biosynthetic process	2.53E-04
20	GO:0071277: cellular response to calcium ion	2.53E-04
21	GO:0071370: cellular response to gibberellin stimulus	2.53E-04
22	GO:0006723: cuticle hydrocarbon biosynthetic process	2.53E-04
23	GO:0033481: galacturonate biosynthetic process	2.53E-04
24	GO:0042371: vitamin K biosynthetic process	2.53E-04
25	GO:0010024: phytochromobilin biosynthetic process	5.59E-04
26	GO:0010115: regulation of abscisic acid biosynthetic process	5.59E-04
27	GO:0015786: UDP-glucose transport	5.59E-04
28	GO:0015893: drug transport	5.59E-04
29	GO:0080148: negative regulation of response to water deprivation	5.59E-04
30	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.59E-04
31	GO:0000038: very long-chain fatty acid metabolic process	5.62E-04
32	GO:0015979: photosynthesis	7.16E-04
33	GO:0009725: response to hormone	7.28E-04
34	GO:0006633: fatty acid biosynthetic process	8.71E-04
35	GO:0015714: phosphoenolpyruvate transport	9.07E-04
36	GO:0043447: alkane biosynthetic process	9.07E-04
37	GO:0006788: heme oxidation	9.07E-04
38	GO:0015783: GDP-fucose transport	9.07E-04
39	GO:0010025: wax biosynthetic process	1.01E-03
40	GO:0006636: unsaturated fatty acid biosynthetic process	1.01E-03
41	GO:0006833: water transport	1.01E-03
42	GO:0042546: cell wall biogenesis	1.24E-03
43	GO:0006241: CTP biosynthetic process	1.29E-03
44	GO:0072334: UDP-galactose transmembrane transport	1.29E-03
45	GO:0009800: cinnamic acid biosynthetic process	1.29E-03
46	GO:0006165: nucleoside diphosphate phosphorylation	1.29E-03
47	GO:0006228: UTP biosynthetic process	1.29E-03
48	GO:0006168: adenine salvage	1.29E-03
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.29E-03
50	GO:0006166: purine ribonucleoside salvage	1.29E-03
51	GO:0007231: osmosensory signaling pathway	1.29E-03
52	GO:0033500: carbohydrate homeostasis	1.73E-03
53	GO:0031122: cytoplasmic microtubule organization	1.73E-03
54	GO:0015713: phosphoglycerate transport	1.73E-03
55	GO:0006749: glutathione metabolic process	1.73E-03
56	GO:0042991: transcription factor import into nucleus	1.73E-03
57	GO:0034220: ion transmembrane transport	2.05E-03
58	GO:0044209: AMP salvage	2.21E-03
59	GO:0006656: phosphatidylcholine biosynthetic process	2.21E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.72E-03
61	GO:0009913: epidermal cell differentiation	2.72E-03
62	GO:0006559: L-phenylalanine catabolic process	2.72E-03
63	GO:0010190: cytochrome b6f complex assembly	2.72E-03
64	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.72E-03
65	GO:0000741: karyogamy	2.72E-03
66	GO:0006596: polyamine biosynthetic process	2.72E-03
67	GO:0006561: proline biosynthetic process	2.72E-03
68	GO:0048759: xylem vessel member cell differentiation	2.72E-03
69	GO:0010405: arabinogalactan protein metabolic process	2.72E-03
70	GO:0042372: phylloquinone biosynthetic process	3.27E-03
71	GO:0006694: steroid biosynthetic process	3.27E-03
72	GO:0009395: phospholipid catabolic process	3.86E-03
73	GO:0030497: fatty acid elongation	3.86E-03
74	GO:0050829: defense response to Gram-negative bacterium	3.86E-03
75	GO:0010444: guard mother cell differentiation	3.86E-03
76	GO:0016126: sterol biosynthetic process	3.92E-03
77	GO:0055114: oxidation-reduction process	4.05E-03
78	GO:0007155: cell adhesion	4.48E-03
79	GO:0006402: mRNA catabolic process	4.48E-03
80	GO:0030091: protein repair	4.48E-03
81	GO:0042255: ribosome assembly	4.48E-03
82	GO:0009850: auxin metabolic process	4.48E-03
83	GO:0055085: transmembrane transport	4.66E-03
84	GO:0018298: protein-chromophore linkage	5.11E-03
85	GO:0009699: phenylpropanoid biosynthetic process	5.13E-03
86	GO:0009932: cell tip growth	5.13E-03
87	GO:0017004: cytochrome complex assembly	5.13E-03
88	GO:0009808: lignin metabolic process	5.13E-03
89	GO:0007623: circadian rhythm	5.40E-03
90	GO:0009407: toxin catabolic process	5.63E-03
91	GO:0090333: regulation of stomatal closure	5.81E-03
92	GO:0015780: nucleotide-sugar transport	5.81E-03
93	GO:0010119: regulation of stomatal movement	5.91E-03
94	GO:0010205: photoinhibition	6.52E-03
95	GO:0019538: protein metabolic process	7.26E-03
96	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.26E-03
97	GO:0009688: abscisic acid biosynthetic process	7.26E-03
98	GO:0043069: negative regulation of programmed cell death	7.26E-03
99	GO:0006839: mitochondrial transport	7.38E-03
100	GO:0006816: calcium ion transport	8.04E-03
101	GO:0019684: photosynthesis, light reaction	8.04E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	8.04E-03
103	GO:1903507: negative regulation of nucleic acid-templated transcription	8.04E-03
104	GO:0009750: response to fructose	8.04E-03
105	GO:0009744: response to sucrose	8.35E-03
106	GO:0009636: response to toxic substance	9.39E-03
107	GO:0009658: chloroplast organization	9.41E-03
108	GO:2000028: regulation of photoperiodism, flowering	9.66E-03
109	GO:0006855: drug transmembrane transport	9.76E-03
110	GO:0009414: response to water deprivation	1.01E-02
111	GO:0010143: cutin biosynthetic process	1.05E-02
112	GO:0006979: response to oxidative stress	1.07E-02
113	GO:0009736: cytokinin-activated signaling pathway	1.13E-02
114	GO:0009225: nucleotide-sugar metabolic process	1.14E-02
115	GO:0005985: sucrose metabolic process	1.14E-02
116	GO:0070588: calcium ion transmembrane transport	1.14E-02
117	GO:0009416: response to light stimulus	1.16E-02
118	GO:0006857: oligopeptide transport	1.21E-02
119	GO:0009833: plant-type primary cell wall biogenesis	1.23E-02
120	GO:0019762: glucosinolate catabolic process	1.23E-02
121	GO:0080167: response to karrikin	1.24E-02
122	GO:0005992: trehalose biosynthetic process	1.32E-02
123	GO:0006487: protein N-linked glycosylation	1.32E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.42E-02
125	GO:0031408: oxylipin biosynthetic process	1.52E-02
126	GO:0016998: cell wall macromolecule catabolic process	1.52E-02
127	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.62E-02
128	GO:0019748: secondary metabolic process	1.62E-02
129	GO:0009294: DNA mediated transformation	1.72E-02
130	GO:0006869: lipid transport	1.75E-02
131	GO:0009409: response to cold	1.77E-02
132	GO:0006284: base-excision repair	1.83E-02
133	GO:0019722: calcium-mediated signaling	1.83E-02
134	GO:0042127: regulation of cell proliferation	1.83E-02
135	GO:0000271: polysaccharide biosynthetic process	2.05E-02
136	GO:0080022: primary root development	2.05E-02
137	GO:0010087: phloem or xylem histogenesis	2.05E-02
138	GO:0005975: carbohydrate metabolic process	2.15E-02
139	GO:0045489: pectin biosynthetic process	2.16E-02
140	GO:0010197: polar nucleus fusion	2.16E-02
141	GO:0010182: sugar mediated signaling pathway	2.16E-02
142	GO:0048825: cotyledon development	2.39E-02
143	GO:0071554: cell wall organization or biogenesis	2.51E-02
144	GO:0002229: defense response to oomycetes	2.51E-02
145	GO:0016132: brassinosteroid biosynthetic process	2.51E-02
146	GO:0010583: response to cyclopentenone	2.63E-02
147	GO:0048235: pollen sperm cell differentiation	2.63E-02
148	GO:0032502: developmental process	2.63E-02
149	GO:1901657: glycosyl compound metabolic process	2.75E-02
150	GO:0007267: cell-cell signaling	3.00E-02
151	GO:0042742: defense response to bacterium	3.32E-02
152	GO:0009617: response to bacterium	3.33E-02
153	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.39E-02
154	GO:0042128: nitrate assimilation	3.52E-02
155	GO:0016311: dephosphorylation	3.80E-02
156	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
157	GO:0000160: phosphorelay signal transduction system	4.08E-02
158	GO:0009826: unidimensional cell growth	4.14E-02
159	GO:0009834: plant-type secondary cell wall biogenesis	4.22E-02
160	GO:0010218: response to far red light	4.22E-02
161	GO:0009611: response to wounding	4.25E-02
162	GO:0048527: lateral root development	4.36E-02
163	GO:0009867: jasmonic acid mediated signaling pathway	4.66E-02
164	GO:0016051: carbohydrate biosynthetic process	4.66E-02
165	GO:0009637: response to blue light	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
6	GO:0010487: thermospermine synthase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
11	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
12	GO:0004089: carbonate dehydratase activity	3.71E-05
13	GO:0004506: squalene monooxygenase activity	4.39E-05
14	GO:0051753: mannan synthase activity	1.41E-04
15	GO:0000170: sphingosine hydroxylase activity	2.53E-04
16	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.53E-04
17	GO:0090422: thiamine pyrophosphate transporter activity	2.53E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	2.53E-04
19	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.53E-04
20	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.53E-04
21	GO:0008568: microtubule-severing ATPase activity	2.53E-04
22	GO:0016768: spermine synthase activity	2.53E-04
23	GO:0004328: formamidase activity	2.53E-04
24	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.81E-04
25	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.90E-04
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.53E-04
27	GO:0003938: IMP dehydrogenase activity	5.59E-04
28	GO:0042284: sphingolipid delta-4 desaturase activity	5.59E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.59E-04
30	GO:0008967: phosphoglycolate phosphatase activity	5.59E-04
31	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.59E-04
32	GO:0042389: omega-3 fatty acid desaturase activity	5.59E-04
33	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.64E-04
34	GO:0050734: hydroxycinnamoyltransferase activity	9.07E-04
35	GO:0045548: phenylalanine ammonia-lyase activity	9.07E-04
36	GO:0005457: GDP-fucose transmembrane transporter activity	9.07E-04
37	GO:0015297: antiporter activity	9.34E-04
38	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.01E-03
39	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.01E-03
40	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.01E-03
41	GO:0005215: transporter activity	1.15E-03
42	GO:0001872: (1->3)-beta-D-glucan binding	1.29E-03
43	GO:0003999: adenine phosphoribosyltransferase activity	1.29E-03
44	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.29E-03
45	GO:0005460: UDP-glucose transmembrane transporter activity	1.29E-03
46	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.29E-03
47	GO:0004550: nucleoside diphosphate kinase activity	1.29E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.73E-03
49	GO:0052793: pectin acetylesterase activity	1.73E-03
50	GO:0050378: UDP-glucuronate 4-epimerase activity	1.73E-03
51	GO:0004392: heme oxygenase (decyclizing) activity	1.73E-03
52	GO:0015120: phosphoglycerate transmembrane transporter activity	1.73E-03
53	GO:0004659: prenyltransferase activity	1.73E-03
54	GO:0008725: DNA-3-methyladenine glycosylase activity	2.21E-03
55	GO:0009922: fatty acid elongase activity	2.21E-03
56	GO:0005459: UDP-galactose transmembrane transporter activity	2.21E-03
57	GO:0004872: receptor activity	2.54E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.72E-03
59	GO:0016208: AMP binding	2.72E-03
60	GO:0051920: peroxiredoxin activity	3.27E-03
61	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.27E-03
62	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.27E-03
63	GO:0016758: transferase activity, transferring hexosyl groups	3.46E-03
64	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.49E-03
65	GO:0016413: O-acetyltransferase activity	3.70E-03
66	GO:0003824: catalytic activity	3.80E-03
67	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.86E-03
68	GO:0015250: water channel activity	3.92E-03
69	GO:0016168: chlorophyll binding	4.15E-03
70	GO:0004564: beta-fructofuranosidase activity	4.48E-03
71	GO:0016209: antioxidant activity	4.48E-03
72	GO:0015238: drug transmembrane transporter activity	5.37E-03
73	GO:0016491: oxidoreductase activity	5.44E-03
74	GO:0004575: sucrose alpha-glucosidase activity	6.52E-03
75	GO:0003993: acid phosphatase activity	6.77E-03
76	GO:0004805: trehalose-phosphatase activity	7.26E-03
77	GO:0030234: enzyme regulator activity	7.26E-03
78	GO:0042802: identical protein binding	7.32E-03
79	GO:0004364: glutathione transferase activity	8.02E-03
80	GO:0004185: serine-type carboxypeptidase activity	8.35E-03
81	GO:0008081: phosphoric diester hydrolase activity	9.66E-03
82	GO:0004022: alcohol dehydrogenase (NAD) activity	9.66E-03
83	GO:0005262: calcium channel activity	9.66E-03
84	GO:0050660: flavin adenine dinucleotide binding	1.13E-02
85	GO:0031409: pigment binding	1.23E-02
86	GO:0003714: transcription corepressor activity	1.32E-02
87	GO:0052689: carboxylic ester hydrolase activity	1.41E-02
88	GO:0043424: protein histidine kinase binding	1.42E-02
89	GO:0004650: polygalacturonase activity	1.47E-02
90	GO:0030599: pectinesterase activity	1.52E-02
91	GO:0022857: transmembrane transporter activity	1.52E-02
92	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.62E-02
93	GO:0016746: transferase activity, transferring acyl groups	1.66E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.72E-02
95	GO:0003727: single-stranded RNA binding	1.83E-02
96	GO:0005516: calmodulin binding	2.14E-02
97	GO:0048038: quinone binding	2.51E-02
98	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.60E-02
99	GO:0000156: phosphorelay response regulator activity	2.75E-02
100	GO:0008289: lipid binding	3.07E-02
101	GO:0016757: transferase activity, transferring glycosyl groups	3.34E-02
102	GO:0008375: acetylglucosaminyltransferase activity	3.52E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.52E-02
104	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
105	GO:0030247: polysaccharide binding	3.66E-02
106	GO:0004683: calmodulin-dependent protein kinase activity	3.66E-02
107	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.22E-02
108	GO:0004601: peroxidase activity	4.30E-02
109	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.36E-02
110	GO:0016788: hydrolase activity, acting on ester bonds	4.38E-02
111	GO:0008422: beta-glucosidase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.56E-08
2	GO:0048046: apoplast	5.50E-07
3	GO:0016021: integral component of membrane	1.89E-06
4	GO:0009507: chloroplast	4.65E-06
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.04E-05
6	GO:0031225: anchored component of membrane	2.14E-05
7	GO:0005576: extracellular region	1.70E-04
8	GO:0005618: cell wall	3.33E-04
9	GO:0009505: plant-type cell wall	4.48E-04
10	GO:0000139: Golgi membrane	5.43E-04
11	GO:0005886: plasma membrane	5.48E-04
12	GO:0042170: plastid membrane	5.59E-04
13	GO:0005775: vacuolar lumen	1.29E-03
14	GO:0009941: chloroplast envelope	1.53E-03
15	GO:0046658: anchored component of plasma membrane	1.53E-03
16	GO:0031969: chloroplast membrane	2.69E-03
17	GO:0010319: stromule	3.49E-03
18	GO:0016020: membrane	4.41E-03
19	GO:0005789: endoplasmic reticulum membrane	7.27E-03
20	GO:0030095: chloroplast photosystem II	1.05E-02
21	GO:0030076: light-harvesting complex	1.14E-02
22	GO:0005875: microtubule associated complex	1.23E-02
23	GO:0005758: mitochondrial intermembrane space	1.32E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.42E-02
25	GO:0042651: thylakoid membrane	1.42E-02
26	GO:0009579: thylakoid	1.52E-02
27	GO:0009534: chloroplast thylakoid	1.54E-02
28	GO:0009706: chloroplast inner membrane	1.61E-02
29	GO:0009543: chloroplast thylakoid lumen	2.02E-02
30	GO:0009570: chloroplast stroma	2.21E-02
31	GO:0009522: photosystem I	2.27E-02
32	GO:0009523: photosystem II	2.39E-02
33	GO:0019898: extrinsic component of membrane	2.39E-02
34	GO:0032580: Golgi cisterna membrane	2.87E-02
35	GO:0005887: integral component of plasma membrane	2.97E-02
36	GO:0005778: peroxisomal membrane	3.00E-02
37	GO:0030529: intracellular ribonucleoprotein complex	3.26E-02
38	GO:0000325: plant-type vacuole	4.36E-02