GO Enrichment Analysis of Co-expressed Genes with
AT1G12250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098586: cellular response to virus | 0.00E+00 |
| 2 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 3 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 7 | GO:0010027: thylakoid membrane organization | 3.58E-05 |
| 8 | GO:0008152: metabolic process | 4.00E-05 |
| 9 | GO:0009443: pyridoxal 5'-phosphate salvage | 6.91E-05 |
| 10 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.91E-05 |
| 11 | GO:1904964: positive regulation of phytol biosynthetic process | 6.91E-05 |
| 12 | GO:0043686: co-translational protein modification | 6.91E-05 |
| 13 | GO:0009773: photosynthetic electron transport in photosystem I | 8.80E-05 |
| 14 | GO:0046741: transport of virus in host, tissue to tissue | 1.66E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.66E-04 |
| 16 | GO:0010115: regulation of abscisic acid biosynthetic process | 1.66E-04 |
| 17 | GO:0007017: microtubule-based process | 2.16E-04 |
| 18 | GO:0016050: vesicle organization | 2.81E-04 |
| 19 | GO:0006753: nucleoside phosphate metabolic process | 2.81E-04 |
| 20 | GO:0009152: purine ribonucleotide biosynthetic process | 4.06E-04 |
| 21 | GO:0046653: tetrahydrofolate metabolic process | 4.06E-04 |
| 22 | GO:0009800: cinnamic acid biosynthetic process | 4.06E-04 |
| 23 | GO:0043572: plastid fission | 4.06E-04 |
| 24 | GO:0009765: photosynthesis, light harvesting | 5.42E-04 |
| 25 | GO:0015994: chlorophyll metabolic process | 5.42E-04 |
| 26 | GO:0006546: glycine catabolic process | 5.42E-04 |
| 27 | GO:0010021: amylopectin biosynthetic process | 5.42E-04 |
| 28 | GO:0031365: N-terminal protein amino acid modification | 6.87E-04 |
| 29 | GO:0006461: protein complex assembly | 6.87E-04 |
| 30 | GO:0009107: lipoate biosynthetic process | 6.87E-04 |
| 31 | GO:0080110: sporopollenin biosynthetic process | 6.87E-04 |
| 32 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 8.40E-04 |
| 33 | GO:0006751: glutathione catabolic process | 8.40E-04 |
| 34 | GO:0006559: L-phenylalanine catabolic process | 8.40E-04 |
| 35 | GO:0006561: proline biosynthetic process | 8.40E-04 |
| 36 | GO:0010196: nonphotochemical quenching | 1.17E-03 |
| 37 | GO:0015937: coenzyme A biosynthetic process | 1.17E-03 |
| 38 | GO:0006400: tRNA modification | 1.17E-03 |
| 39 | GO:0005978: glycogen biosynthetic process | 1.34E-03 |
| 40 | GO:0015979: photosynthesis | 1.50E-03 |
| 41 | GO:0015996: chlorophyll catabolic process | 1.53E-03 |
| 42 | GO:0009657: plastid organization | 1.53E-03 |
| 43 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.73E-03 |
| 44 | GO:0006098: pentose-phosphate shunt | 1.73E-03 |
| 45 | GO:0000373: Group II intron splicing | 1.73E-03 |
| 46 | GO:0005982: starch metabolic process | 1.93E-03 |
| 47 | GO:0032259: methylation | 1.97E-03 |
| 48 | GO:0009688: abscisic acid biosynthetic process | 2.14E-03 |
| 49 | GO:0009073: aromatic amino acid family biosynthetic process | 2.36E-03 |
| 50 | GO:0009750: response to fructose | 2.36E-03 |
| 51 | GO:0006094: gluconeogenesis | 2.82E-03 |
| 52 | GO:0010628: positive regulation of gene expression | 2.82E-03 |
| 53 | GO:0006006: glucose metabolic process | 2.82E-03 |
| 54 | GO:0010020: chloroplast fission | 3.06E-03 |
| 55 | GO:0051302: regulation of cell division | 4.08E-03 |
| 56 | GO:0010584: pollen exine formation | 5.20E-03 |
| 57 | GO:0009561: megagametogenesis | 5.20E-03 |
| 58 | GO:0010182: sugar mediated signaling pathway | 6.11E-03 |
| 59 | GO:0048544: recognition of pollen | 6.42E-03 |
| 60 | GO:0019252: starch biosynthetic process | 6.74E-03 |
| 61 | GO:0000302: response to reactive oxygen species | 7.07E-03 |
| 62 | GO:0009658: chloroplast organization | 7.13E-03 |
| 63 | GO:0019761: glucosinolate biosynthetic process | 7.40E-03 |
| 64 | GO:0001666: response to hypoxia | 9.13E-03 |
| 65 | GO:0018298: protein-chromophore linkage | 1.10E-02 |
| 66 | GO:0055114: oxidation-reduction process | 1.13E-02 |
| 67 | GO:0009853: photorespiration | 1.30E-02 |
| 68 | GO:0006397: mRNA processing | 1.37E-02 |
| 69 | GO:0006364: rRNA processing | 1.92E-02 |
| 70 | GO:0009735: response to cytokinin | 2.13E-02 |
| 71 | GO:0006096: glycolytic process | 2.17E-02 |
| 72 | GO:0009058: biosynthetic process | 3.01E-02 |
| 73 | GO:0007166: cell surface receptor signaling pathway | 4.01E-02 |
| 74 | GO:0008380: RNA splicing | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0016787: hydrolase activity | 8.97E-06 |
| 6 | GO:0050139: nicotinate-N-glucosyltransferase activity | 6.91E-05 |
| 7 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 6.91E-05 |
| 8 | GO:0042586: peptide deformylase activity | 6.91E-05 |
| 9 | GO:0010945: CoA pyrophosphatase activity | 6.91E-05 |
| 10 | GO:0034256: chlorophyll(ide) b reductase activity | 6.91E-05 |
| 11 | GO:0047746: chlorophyllase activity | 1.66E-04 |
| 12 | GO:0003839: gamma-glutamylcyclotransferase activity | 1.66E-04 |
| 13 | GO:0018708: thiol S-methyltransferase activity | 1.66E-04 |
| 14 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.66E-04 |
| 15 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.81E-04 |
| 16 | GO:0070402: NADPH binding | 2.81E-04 |
| 17 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.81E-04 |
| 18 | GO:0043169: cation binding | 2.81E-04 |
| 19 | GO:0016992: lipoate synthase activity | 2.81E-04 |
| 20 | GO:0045548: phenylalanine ammonia-lyase activity | 2.81E-04 |
| 21 | GO:0001872: (1->3)-beta-D-glucan binding | 4.06E-04 |
| 22 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 4.06E-04 |
| 23 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 5.42E-04 |
| 24 | GO:0004045: aminoacyl-tRNA hydrolase activity | 5.42E-04 |
| 25 | GO:0043495: protein anchor | 5.42E-04 |
| 26 | GO:0004332: fructose-bisphosphate aldolase activity | 8.40E-04 |
| 27 | GO:0000210: NAD+ diphosphatase activity | 8.40E-04 |
| 28 | GO:0008168: methyltransferase activity | 9.33E-04 |
| 29 | GO:0019899: enzyme binding | 1.17E-03 |
| 30 | GO:0004033: aldo-keto reductase (NADP) activity | 1.34E-03 |
| 31 | GO:0043022: ribosome binding | 1.34E-03 |
| 32 | GO:0031072: heat shock protein binding | 2.82E-03 |
| 33 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.82E-03 |
| 34 | GO:0016491: oxidoreductase activity | 3.33E-03 |
| 35 | GO:0005528: FK506 binding | 3.81E-03 |
| 36 | GO:0022891: substrate-specific transmembrane transporter activity | 4.91E-03 |
| 37 | GO:0050662: coenzyme binding | 6.42E-03 |
| 38 | GO:0008483: transaminase activity | 8.42E-03 |
| 39 | GO:0005200: structural constituent of cytoskeleton | 8.42E-03 |
| 40 | GO:0016597: amino acid binding | 8.77E-03 |
| 41 | GO:0051213: dioxygenase activity | 9.13E-03 |
| 42 | GO:0016168: chlorophyll binding | 9.50E-03 |
| 43 | GO:0030247: polysaccharide binding | 1.02E-02 |
| 44 | GO:0003824: catalytic activity | 1.18E-02 |
| 45 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.30E-02 |
| 46 | GO:0003746: translation elongation factor activity | 1.30E-02 |
| 47 | GO:0009055: electron carrier activity | 1.40E-02 |
| 48 | GO:0050661: NADP binding | 1.43E-02 |
| 49 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.43E-02 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.74E-02 |
| 51 | GO:0003777: microtubule motor activity | 2.07E-02 |
| 52 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.32E-02 |
| 53 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.32E-02 |
| 54 | GO:0051082: unfolded protein binding | 2.47E-02 |
| 55 | GO:0016829: lyase activity | 3.07E-02 |
| 56 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.07E-02 |
| 57 | GO:0004252: serine-type endopeptidase activity | 3.12E-02 |
| 58 | GO:0030246: carbohydrate binding | 3.13E-02 |
| 59 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.47E-02 |
| 60 | GO:0005525: GTP binding | 3.82E-02 |
| 61 | GO:0008194: UDP-glycosyltransferase activity | 3.95E-02 |
| 62 | GO:0042802: identical protein binding | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 6.26E-24 |
| 2 | GO:0009570: chloroplast stroma | 8.21E-12 |
| 3 | GO:0009534: chloroplast thylakoid | 1.49E-10 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.01E-10 |
| 5 | GO:0031977: thylakoid lumen | 3.68E-06 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.72E-05 |
| 7 | GO:0009941: chloroplast envelope | 1.12E-04 |
| 8 | GO:0009579: thylakoid | 1.62E-04 |
| 9 | GO:0042651: thylakoid membrane | 2.16E-04 |
| 10 | GO:0015630: microtubule cytoskeleton | 4.06E-04 |
| 11 | GO:0009523: photosystem II | 4.53E-04 |
| 12 | GO:0030286: dynein complex | 5.42E-04 |
| 13 | GO:0030529: intracellular ribonucleoprotein complex | 6.92E-04 |
| 14 | GO:0009840: chloroplastic endopeptidase Clp complex | 9.99E-04 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 1.17E-03 |
| 16 | GO:0009501: amyloplast | 1.34E-03 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.73E-03 |
| 18 | GO:0009508: plastid chromosome | 2.82E-03 |
| 19 | GO:0030095: chloroplast photosystem II | 3.06E-03 |
| 20 | GO:0005875: microtubule associated complex | 3.56E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 4.08E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 6.74E-03 |
| 23 | GO:0009295: nucleoid | 8.42E-03 |
| 24 | GO:0005778: peroxisomal membrane | 8.42E-03 |
| 25 | GO:0009707: chloroplast outer membrane | 1.10E-02 |
| 26 | GO:0009706: chloroplast inner membrane | 2.47E-02 |
| 27 | GO:0010287: plastoglobule | 2.79E-02 |
| 28 | GO:0005759: mitochondrial matrix | 3.41E-02 |
| 29 | GO:0046658: anchored component of plasma membrane | 4.45E-02 |