Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015822: ornithine transport0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:0015976: carbon utilization5.80E-07
6GO:0045490: pectin catabolic process5.39E-06
7GO:0007155: cell adhesion1.05E-05
8GO:0071554: cell wall organization or biogenesis3.88E-05
9GO:0006810: transport4.39E-05
10GO:0010583: response to cyclopentenone4.42E-05
11GO:2000122: negative regulation of stomatal complex development7.15E-05
12GO:0006546: glycine catabolic process7.15E-05
13GO:0010037: response to carbon dioxide7.15E-05
14GO:0010411: xyloglucan metabolic process1.07E-04
15GO:0042545: cell wall modification1.19E-04
16GO:0006833: water transport1.20E-04
17GO:0071555: cell wall organization2.09E-04
18GO:0017148: negative regulation of translation2.20E-04
19GO:0006633: fatty acid biosynthetic process3.11E-04
20GO:0042546: cell wall biogenesis3.19E-04
21GO:0042335: cuticle development3.33E-04
22GO:0034220: ion transmembrane transport3.33E-04
23GO:1901349: glucosinolate transport3.37E-04
24GO:0090449: phloem glucosinolate loading3.37E-04
25GO:0010442: guard cell morphogenesis3.37E-04
26GO:0006723: cuticle hydrocarbon biosynthetic process3.37E-04
27GO:1901599: (-)-pinoresinol biosynthetic process3.37E-04
28GO:0000066: mitochondrial ornithine transport3.37E-04
29GO:2000123: positive regulation of stomatal complex development7.34E-04
30GO:0052541: plant-type cell wall cellulose metabolic process7.34E-04
31GO:0006695: cholesterol biosynthetic process7.34E-04
32GO:0015786: UDP-glucose transport7.34E-04
33GO:0060919: auxin influx7.34E-04
34GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.34E-04
35GO:0030388: fructose 1,6-bisphosphate metabolic process7.34E-04
36GO:0000038: very long-chain fatty acid metabolic process8.40E-04
37GO:0009773: photosynthetic electron transport in photosystem I8.40E-04
38GO:0009817: defense response to fungus, incompatible interaction1.08E-03
39GO:0080167: response to karrikin1.18E-03
40GO:0006000: fructose metabolic process1.19E-03
41GO:0043447: alkane biosynthetic process1.19E-03
42GO:0015840: urea transport1.19E-03
43GO:0015783: GDP-fucose transport1.19E-03
44GO:0019253: reductive pentose-phosphate cycle1.22E-03
45GO:0010025: wax biosynthetic process1.52E-03
46GO:0009833: plant-type primary cell wall biogenesis1.52E-03
47GO:0006241: CTP biosynthetic process1.71E-03
48GO:0072334: UDP-galactose transmembrane transport1.71E-03
49GO:0080170: hydrogen peroxide transmembrane transport1.71E-03
50GO:0051016: barbed-end actin filament capping1.71E-03
51GO:0006165: nucleoside diphosphate phosphorylation1.71E-03
52GO:0006228: UTP biosynthetic process1.71E-03
53GO:0006168: adenine salvage1.71E-03
54GO:0032877: positive regulation of DNA endoreduplication1.71E-03
55GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.71E-03
56GO:0006166: purine ribonucleoside salvage1.71E-03
57GO:0007231: osmosensory signaling pathway1.71E-03
58GO:0019464: glycine decarboxylation via glycine cleavage system2.30E-03
59GO:0009765: photosynthesis, light harvesting2.30E-03
60GO:0006085: acetyl-CoA biosynthetic process2.30E-03
61GO:0006183: GTP biosynthetic process2.30E-03
62GO:0033500: carbohydrate homeostasis2.30E-03
63GO:0031122: cytoplasmic microtubule organization2.30E-03
64GO:2000038: regulation of stomatal complex development2.30E-03
65GO:0006749: glutathione metabolic process2.30E-03
66GO:0009902: chloroplast relocation2.30E-03
67GO:0006542: glutamine biosynthetic process2.30E-03
68GO:0019676: ammonia assimilation cycle2.30E-03
69GO:0044209: AMP salvage2.93E-03
70GO:0032876: negative regulation of DNA endoreduplication2.93E-03
71GO:0010375: stomatal complex patterning2.93E-03
72GO:0046785: microtubule polymerization2.93E-03
73GO:0016120: carotene biosynthetic process2.93E-03
74GO:0006656: phosphatidylcholine biosynthetic process2.93E-03
75GO:0016123: xanthophyll biosynthetic process2.93E-03
76GO:0010190: cytochrome b6f complex assembly3.63E-03
77GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.37E-03
78GO:0042372: phylloquinone biosynthetic process4.37E-03
79GO:0045926: negative regulation of growth4.37E-03
80GO:0009612: response to mechanical stimulus4.37E-03
81GO:0010555: response to mannitol4.37E-03
82GO:0030497: fatty acid elongation5.15E-03
83GO:0009645: response to low light intensity stimulus5.15E-03
84GO:0050790: regulation of catalytic activity5.15E-03
85GO:0007267: cell-cell signaling5.31E-03
86GO:0016126: sterol biosynthetic process5.96E-03
87GO:0008610: lipid biosynthetic process5.99E-03
88GO:0006402: mRNA catabolic process5.99E-03
89GO:0009642: response to light intensity5.99E-03
90GO:0045010: actin nucleation5.99E-03
91GO:0052543: callose deposition in cell wall5.99E-03
92GO:0009932: cell tip growth6.87E-03
93GO:0006002: fructose 6-phosphate metabolic process6.87E-03
94GO:0022900: electron transport chain6.87E-03
95GO:0007389: pattern specification process6.87E-03
96GO:0045337: farnesyl diphosphate biosynthetic process7.79E-03
97GO:0010206: photosystem II repair7.79E-03
98GO:0033384: geranyl diphosphate biosynthetic process7.79E-03
99GO:0006754: ATP biosynthetic process7.79E-03
100GO:0048589: developmental growth7.79E-03
101GO:0009407: toxin catabolic process8.59E-03
102GO:0010119: regulation of stomatal movement9.01E-03
103GO:0010192: mucilage biosynthetic process9.76E-03
104GO:0019538: protein metabolic process9.76E-03
105GO:0055085: transmembrane transport9.76E-03
106GO:0009870: defense response signaling pathway, resistance gene-dependent9.76E-03
107GO:0043069: negative regulation of programmed cell death9.76E-03
108GO:0048829: root cap development9.76E-03
109GO:0016051: carbohydrate biosynthetic process9.89E-03
110GO:0006816: calcium ion transport1.08E-02
111GO:0019684: photosynthesis, light reaction1.08E-02
112GO:0009089: lysine biosynthetic process via diaminopimelate1.08E-02
113GO:0009807: lignan biosynthetic process1.08E-02
114GO:1903507: negative regulation of nucleic acid-templated transcription1.08E-02
115GO:0006839: mitochondrial transport1.13E-02
116GO:0006790: sulfur compound metabolic process1.19E-02
117GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-02
118GO:0005986: sucrose biosynthetic process1.30E-02
119GO:2000028: regulation of photoperiodism, flowering1.30E-02
120GO:0030036: actin cytoskeleton organization1.30E-02
121GO:0050826: response to freezing1.30E-02
122GO:0009725: response to hormone1.30E-02
123GO:0006094: gluconeogenesis1.30E-02
124GO:0009767: photosynthetic electron transport chain1.30E-02
125GO:0048768: root hair cell tip growth1.42E-02
126GO:0010143: cutin biosynthetic process1.42E-02
127GO:0009636: response to toxic substance1.44E-02
128GO:0009825: multidimensional cell growth1.54E-02
129GO:0070588: calcium ion transmembrane transport1.54E-02
130GO:0046854: phosphatidylinositol phosphorylation1.54E-02
131GO:0005975: carbohydrate metabolic process1.63E-02
132GO:0006636: unsaturated fatty acid biosynthetic process1.66E-02
133GO:0006071: glycerol metabolic process1.66E-02
134GO:0019344: cysteine biosynthetic process1.79E-02
135GO:0051603: proteolysis involved in cellular protein catabolic process1.79E-02
136GO:0007010: cytoskeleton organization1.79E-02
137GO:0010026: trichome differentiation1.92E-02
138GO:0007017: microtubule-based process1.92E-02
139GO:0061077: chaperone-mediated protein folding2.05E-02
140GO:0003333: amino acid transmembrane transport2.05E-02
141GO:0042742: defense response to bacterium2.18E-02
142GO:2000022: regulation of jasmonic acid mediated signaling pathway2.19E-02
143GO:0080092: regulation of pollen tube growth2.19E-02
144GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.21E-02
145GO:0009294: DNA mediated transformation2.33E-02
146GO:0019722: calcium-mediated signaling2.47E-02
147GO:0015979: photosynthesis2.50E-02
148GO:0009742: brassinosteroid mediated signaling pathway2.61E-02
149GO:0016117: carotenoid biosynthetic process2.62E-02
150GO:0015991: ATP hydrolysis coupled proton transport2.77E-02
151GO:0000271: polysaccharide biosynthetic process2.77E-02
152GO:0000413: protein peptidyl-prolyl isomerization2.77E-02
153GO:0010051: xylem and phloem pattern formation2.77E-02
154GO:0045489: pectin biosynthetic process2.92E-02
155GO:0009741: response to brassinosteroid2.92E-02
156GO:0015986: ATP synthesis coupled proton transport3.07E-02
157GO:0019252: starch biosynthetic process3.23E-02
158GO:0032259: methylation3.26E-02
159GO:0006629: lipid metabolic process3.44E-02
160GO:0048235: pollen sperm cell differentiation3.55E-02
161GO:0010090: trichome morphogenesis3.72E-02
162GO:1901657: glycosyl compound metabolic process3.72E-02
163GO:0007623: circadian rhythm4.24E-02
164GO:0046686: response to cadmium ion4.54E-02
165GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.58E-02
166GO:0007166: cell surface receptor signaling pathway4.84E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0030598: rRNA N-glycosylase activity0.00E+00
6GO:0030599: pectinesterase activity1.05E-05
7GO:0016762: xyloglucan:xyloglucosyl transferase activity3.88E-05
8GO:0016722: oxidoreductase activity, oxidizing metal ions6.36E-05
9GO:0004089: carbonate dehydratase activity7.09E-05
10GO:0016413: O-acetyltransferase activity7.11E-05
11GO:0045330: aspartyl esterase activity7.38E-05
12GO:0016798: hydrolase activity, acting on glycosyl bonds1.07E-04
13GO:0030797: 24-methylenesterol C-methyltransferase activity3.37E-04
14GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.37E-04
15GO:0080132: fatty acid alpha-hydroxylase activity3.37E-04
16GO:0008568: microtubule-severing ATPase activity3.37E-04
17GO:0003838: sterol 24-C-methyltransferase activity3.37E-04
18GO:0010313: phytochrome binding3.37E-04
19GO:0090448: glucosinolate:proton symporter activity3.37E-04
20GO:0042349: guiding stereospecific synthesis activity3.37E-04
21GO:0016759: cellulose synthase activity6.20E-04
22GO:0004047: aminomethyltransferase activity7.34E-04
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.34E-04
24GO:0000064: L-ornithine transmembrane transporter activity7.34E-04
25GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.34E-04
26GO:0008967: phosphoglycolate phosphatase activity7.34E-04
27GO:0000234: phosphoethanolamine N-methyltransferase activity7.34E-04
28GO:0042389: omega-3 fatty acid desaturase activity7.34E-04
29GO:0004618: phosphoglycerate kinase activity7.34E-04
30GO:0015250: water channel activity7.75E-04
31GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.17E-04
32GO:0004148: dihydrolipoyl dehydrogenase activity1.19E-03
33GO:0005457: GDP-fucose transmembrane transporter activity1.19E-03
34GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.52E-03
35GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.52E-03
36GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.52E-03
37GO:0001872: (1->3)-beta-D-glucan binding1.71E-03
38GO:0003878: ATP citrate synthase activity1.71E-03
39GO:0004375: glycine dehydrogenase (decarboxylating) activity1.71E-03
40GO:0048027: mRNA 5'-UTR binding1.71E-03
41GO:0003999: adenine phosphoribosyltransferase activity1.71E-03
42GO:0005460: UDP-glucose transmembrane transporter activity1.71E-03
43GO:0004550: nucleoside diphosphate kinase activity1.71E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.30E-03
45GO:0010328: auxin influx transmembrane transporter activity2.30E-03
46GO:0015204: urea transmembrane transporter activity2.30E-03
47GO:0004659: prenyltransferase activity2.30E-03
48GO:0030570: pectate lyase activity2.43E-03
49GO:0009922: fatty acid elongase activity2.93E-03
50GO:0005459: UDP-galactose transmembrane transporter activity2.93E-03
51GO:0004356: glutamate-ammonia ligase activity2.93E-03
52GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.63E-03
53GO:0016208: AMP binding3.63E-03
54GO:0042578: phosphoric ester hydrolase activity3.63E-03
55GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.63E-03
56GO:0019901: protein kinase binding3.85E-03
57GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.37E-03
58GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.37E-03
59GO:0051753: mannan synthase activity4.37E-03
60GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.37E-03
61GO:0005200: structural constituent of cytoskeleton5.31E-03
62GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.87E-03
63GO:0004337: geranyltranstransferase activity7.79E-03
64GO:0008889: glycerophosphodiester phosphodiesterase activity7.79E-03
65GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.79E-03
66GO:0004161: dimethylallyltranstransferase activity1.08E-02
67GO:0004860: protein kinase inhibitor activity1.08E-02
68GO:0005089: Rho guanyl-nucleotide exchange factor activity1.08E-02
69GO:0046961: proton-transporting ATPase activity, rotational mechanism1.08E-02
70GO:0005507: copper ion binding1.19E-02
71GO:0004364: glutathione transferase activity1.23E-02
72GO:0042802: identical protein binding1.25E-02
73GO:0004185: serine-type carboxypeptidase activity1.28E-02
74GO:0004565: beta-galactosidase activity1.30E-02
75GO:0005262: calcium channel activity1.30E-02
76GO:0016757: transferase activity, transferring glycosyl groups1.32E-02
77GO:0051537: 2 iron, 2 sulfur cluster binding1.38E-02
78GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.49E-02
79GO:0004857: enzyme inhibitor activity1.79E-02
80GO:0005528: FK506 binding1.79E-02
81GO:0003714: transcription corepressor activity1.79E-02
82GO:0043424: protein histidine kinase binding1.92E-02
83GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.19E-02
84GO:0004650: polygalacturonase activity2.25E-02
85GO:0016760: cellulose synthase (UDP-forming) activity2.33E-02
86GO:0008514: organic anion transmembrane transporter activity2.47E-02
87GO:0016746: transferase activity, transferring acyl groups2.53E-02
88GO:0042803: protein homodimerization activity2.81E-02
89GO:0004872: receptor activity3.23E-02
90GO:0048038: quinone binding3.39E-02
91GO:0004518: nuclease activity3.55E-02
92GO:0000156: phosphorelay response regulator activity3.72E-02
93GO:0051015: actin filament binding3.72E-02
94GO:0009055: electron carrier activity3.75E-02
95GO:0016791: phosphatase activity3.88E-02
96GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.96E-02
97GO:0008483: transaminase activity4.05E-02
98GO:0009931: calcium-dependent protein serine/threonine kinase activity4.76E-02
99GO:0102483: scopolin beta-glucosidase activity4.94E-02
100GO:0030247: polysaccharide binding4.94E-02
101GO:0004683: calmodulin-dependent protein kinase activity4.94E-02
RankGO TermAdjusted P value
1GO:0009505: plant-type cell wall1.11E-11
2GO:0048046: apoplast1.83E-11
3GO:0005576: extracellular region3.64E-08
4GO:0031225: anchored component of membrane3.74E-08
5GO:0005618: cell wall8.13E-08
6GO:0046658: anchored component of plasma membrane8.26E-08
7GO:0009579: thylakoid7.30E-07
8GO:0009543: chloroplast thylakoid lumen1.82E-06
9GO:0009535: chloroplast thylakoid membrane2.40E-06
10GO:0009507: chloroplast1.05E-05
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.09E-05
12GO:0009941: chloroplast envelope9.96E-05
13GO:0005794: Golgi apparatus1.14E-04
14GO:0009570: chloroplast stroma1.37E-04
15GO:0009654: photosystem II oxygen evolving complex1.62E-04
16GO:0009506: plasmodesma1.63E-04
17GO:0031977: thylakoid lumen2.62E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]3.37E-04
19GO:0005886: plasma membrane5.37E-04
20GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain7.34E-04
21GO:0042170: plastid membrane7.34E-04
22GO:0030095: chloroplast photosystem II1.22E-03
23GO:0005960: glycine cleavage complex1.71E-03
24GO:0009346: citrate lyase complex1.71E-03
25GO:0009534: chloroplast thylakoid2.64E-03
26GO:0010168: ER body3.63E-03
27GO:0019898: extrinsic component of membrane3.85E-03
28GO:0016020: membrane4.34E-03
29GO:0000139: Golgi membrane4.53E-03
30GO:0042807: central vacuole5.15E-03
31GO:0016021: integral component of membrane6.35E-03
32GO:0009539: photosystem II reaction center6.87E-03
33GO:0000326: protein storage vacuole6.87E-03
34GO:0005773: vacuole6.87E-03
35GO:0045298: tubulin complex7.79E-03
36GO:0055028: cortical microtubule9.76E-03
37GO:0016324: apical plasma membrane9.76E-03
38GO:0048471: perinuclear region of cytoplasm1.08E-02
39GO:0005887: integral component of plasma membrane1.47E-02
40GO:0005753: mitochondrial proton-transporting ATP synthase complex1.54E-02
41GO:0005875: microtubule associated complex1.66E-02
42GO:0005758: mitochondrial intermembrane space1.79E-02
43GO:0022626: cytosolic ribosome2.05E-02
44GO:0010319: stromule4.05E-02
45GO:0005778: peroxisomal membrane4.05E-02
46GO:0005802: trans-Golgi network4.36E-02
47GO:0030529: intracellular ribonucleoprotein complex4.40E-02
Gene type



Gene DE type