Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0009734: auxin-activated signaling pathway3.19E-05
4GO:0009733: response to auxin3.81E-05
5GO:0009926: auxin polar transport6.88E-05
6GO:0010541: acropetal auxin transport1.30E-04
7GO:0048443: stamen development2.21E-04
8GO:0010160: formation of animal organ boundary2.22E-04
9GO:0042335: cuticle development2.60E-04
10GO:1901332: negative regulation of lateral root development3.25E-04
11GO:0080170: hydrogen peroxide transmembrane transport3.25E-04
12GO:0043481: anthocyanin accumulation in tissues in response to UV light3.25E-04
13GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.25E-04
14GO:0030104: water homeostasis4.35E-04
15GO:0006656: phosphatidylcholine biosynthetic process5.52E-04
16GO:0009913: epidermal cell differentiation6.76E-04
17GO:0060918: auxin transport6.76E-04
18GO:0009942: longitudinal axis specification8.05E-04
19GO:1900057: positive regulation of leaf senescence9.40E-04
20GO:1900056: negative regulation of leaf senescence9.40E-04
21GO:0046620: regulation of organ growth1.08E-03
22GO:0007389: pattern specification process1.23E-03
23GO:0010206: photosystem II repair1.38E-03
24GO:0048589: developmental growth1.38E-03
25GO:0009245: lipid A biosynthetic process1.38E-03
26GO:0009638: phototropism1.54E-03
27GO:0009773: photosynthetic electron transport in photosystem I1.88E-03
28GO:0010152: pollen maturation2.06E-03
29GO:0008361: regulation of cell size2.06E-03
30GO:0030048: actin filament-based movement2.25E-03
31GO:0006094: gluconeogenesis2.25E-03
32GO:0010588: cotyledon vascular tissue pattern formation2.25E-03
33GO:0009785: blue light signaling pathway2.25E-03
34GO:0010207: photosystem II assembly2.43E-03
35GO:0010540: basipetal auxin transport2.43E-03
36GO:0071732: cellular response to nitric oxide2.63E-03
37GO:0010030: positive regulation of seed germination2.63E-03
38GO:0009416: response to light stimulus2.78E-03
39GO:0051017: actin filament bundle assembly3.03E-03
40GO:0007017: microtubule-based process3.24E-03
41GO:0048511: rhythmic process3.46E-03
42GO:0071369: cellular response to ethylene stimulus3.90E-03
43GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.90E-03
44GO:0006284: base-excision repair4.13E-03
45GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.36E-03
46GO:0080022: primary root development4.60E-03
47GO:0034220: ion transmembrane transport4.60E-03
48GO:0010087: phloem or xylem histogenesis4.60E-03
49GO:0042631: cellular response to water deprivation4.60E-03
50GO:0009958: positive gravitropism4.84E-03
51GO:0010305: leaf vascular tissue pattern formation4.84E-03
52GO:0042752: regulation of circadian rhythm5.09E-03
53GO:0048825: cotyledon development5.34E-03
54GO:0000302: response to reactive oxygen species5.60E-03
55GO:0010583: response to cyclopentenone5.86E-03
56GO:0071281: cellular response to iron ion6.12E-03
57GO:0009639: response to red or far red light6.39E-03
58GO:0009828: plant-type cell wall loosening6.39E-03
59GO:0010252: auxin homeostasis6.39E-03
60GO:0015979: photosynthesis7.20E-03
61GO:0045892: negative regulation of transcription, DNA-templated7.66E-03
62GO:0009627: systemic acquired resistance7.79E-03
63GO:0015995: chlorophyll biosynthetic process8.09E-03
64GO:0032259: methylation8.91E-03
65GO:0010311: lateral root formation8.99E-03
66GO:0010218: response to far red light9.30E-03
67GO:0048527: lateral root development9.61E-03
68GO:0048364: root development9.71E-03
69GO:0016051: carbohydrate biosynthetic process1.02E-02
70GO:0009637: response to blue light1.02E-02
71GO:0034599: cellular response to oxidative stress1.06E-02
72GO:0005975: carbohydrate metabolic process1.16E-02
73GO:0009640: photomorphogenesis1.23E-02
74GO:0006855: drug transmembrane transport1.37E-02
75GO:0009664: plant-type cell wall organization1.44E-02
76GO:0006364: rRNA processing1.51E-02
77GO:0006096: glycolytic process1.70E-02
78GO:0048367: shoot system development1.74E-02
79GO:0055085: transmembrane transport2.11E-02
80GO:0009845: seed germination2.41E-02
81GO:0042744: hydrogen peroxide catabolic process2.50E-02
82GO:0006633: fatty acid biosynthetic process2.68E-02
83GO:0016567: protein ubiquitination2.78E-02
84GO:0045490: pectin catabolic process2.87E-02
85GO:0006470: protein dephosphorylation3.15E-02
86GO:0071555: cell wall organization3.36E-02
87GO:0009826: unidimensional cell growth3.81E-02
88GO:0042254: ribosome biogenesis3.96E-02
89GO:0080167: response to karrikin4.56E-02
90GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.67E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0010329: auxin efflux transmembrane transporter activity8.17E-05
3GO:0000234: phosphoethanolamine N-methyltransferase activity1.30E-04
4GO:0090729: toxin activity2.22E-04
5GO:0010011: auxin binding4.35E-04
6GO:0008725: DNA-3-methyladenine glycosylase activity5.52E-04
7GO:0031177: phosphopantetheine binding6.76E-04
8GO:0004332: fructose-bisphosphate aldolase activity6.76E-04
9GO:0004130: cytochrome-c peroxidase activity6.76E-04
10GO:0042578: phosphoric ester hydrolase activity6.76E-04
11GO:0000035: acyl binding8.05E-04
12GO:0016832: aldehyde-lyase activity8.05E-04
13GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.08E-03
14GO:0009672: auxin:proton symporter activity1.54E-03
15GO:0015020: glucuronosyltransferase activity1.71E-03
16GO:0004650: polygalacturonase activity1.77E-03
17GO:0008794: arsenate reductase (glutaredoxin) activity1.88E-03
18GO:0031072: heat shock protein binding2.25E-03
19GO:0003774: motor activity2.43E-03
20GO:0016829: lyase activity2.60E-03
21GO:0005515: protein binding3.75E-03
22GO:0030570: pectate lyase activity3.90E-03
23GO:0003756: protein disulfide isomerase activity4.13E-03
24GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.19E-03
25GO:0051015: actin filament binding6.12E-03
26GO:0016791: phosphatase activity6.39E-03
27GO:0005200: structural constituent of cytoskeleton6.66E-03
28GO:0015250: water channel activity7.22E-03
29GO:0008375: acetylglucosaminyltransferase activity7.79E-03
30GO:0004871: signal transducer activity7.91E-03
31GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.38E-03
32GO:0016614: oxidoreductase activity, acting on CH-OH group of donors9.61E-03
33GO:0004712: protein serine/threonine/tyrosine kinase activity1.09E-02
34GO:0051537: 2 iron, 2 sulfur cluster binding1.30E-02
35GO:0008289: lipid binding1.30E-02
36GO:0003777: microtubule motor activity1.63E-02
37GO:0051082: unfolded protein binding1.94E-02
38GO:0015035: protein disulfide oxidoreductase activity1.98E-02
39GO:0003743: translation initiation factor activity3.20E-02
40GO:0042802: identical protein binding3.40E-02
41GO:0004601: peroxidase activity3.91E-02
42GO:0050660: flavin adenine dinucleotide binding4.34E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0043674: columella5.34E-05
3GO:0009534: chloroplast thylakoid8.10E-05
4GO:0030093: chloroplast photosystem I1.30E-04
5GO:0042807: central vacuole9.40E-04
6GO:0009535: chloroplast thylakoid membrane9.92E-04
7GO:0008180: COP9 signalosome1.38E-03
8GO:0045298: tubulin complex1.38E-03
9GO:0009507: chloroplast1.43E-03
10GO:0016459: myosin complex1.71E-03
11GO:0009508: plastid chromosome2.25E-03
12GO:0009543: chloroplast thylakoid lumen2.41E-03
13GO:0030095: chloroplast photosystem II2.43E-03
14GO:0015629: actin cytoskeleton3.90E-03
15GO:0009522: photosystem I5.09E-03
16GO:0009523: photosystem II5.34E-03
17GO:0009570: chloroplast stroma6.48E-03
18GO:0009295: nucleoid6.66E-03
19GO:0019005: SCF ubiquitin ligase complex8.68E-03
20GO:0031977: thylakoid lumen1.16E-02
21GO:0005856: cytoskeleton1.33E-02
22GO:0009941: chloroplast envelope1.36E-02
23GO:0000502: proteasome complex1.51E-02
24GO:0009579: thylakoid1.98E-02
25GO:0010287: plastoglobule2.19E-02
26GO:0031225: anchored component of membrane2.59E-02
27GO:0005886: plasma membrane2.83E-02
28GO:0009705: plant-type vacuole membrane2.87E-02
29GO:0005618: cell wall3.85E-02
30GO:0009505: plant-type cell wall4.20E-02
31GO:0005874: microtubule4.45E-02
32GO:0031969: chloroplast membrane4.56E-02
Gene type



Gene DE type