Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G11910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033587: shikimate biosynthetic process0.00E+00
2GO:0051238: sequestering of metal ion0.00E+00
3GO:0048227: plasma membrane to endosome transport0.00E+00
4GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
5GO:0006592: ornithine biosynthetic process0.00E+00
6GO:0006593: ornithine catabolic process0.00E+00
7GO:0006482: protein demethylation0.00E+00
8GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
9GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
10GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
11GO:0010360: negative regulation of anion channel activity0.00E+00
12GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
13GO:0006983: ER overload response0.00E+00
14GO:0001676: long-chain fatty acid metabolic process4.01E-05
15GO:0006468: protein phosphorylation9.71E-05
16GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.62E-04
17GO:1900425: negative regulation of defense response to bacterium1.62E-04
18GO:0034214: protein hexamerization3.37E-04
19GO:0019544: arginine catabolic process to glutamate3.37E-04
20GO:0098721: uracil import across plasma membrane3.37E-04
21GO:0098702: adenine import across plasma membrane3.37E-04
22GO:1903648: positive regulation of chlorophyll catabolic process3.37E-04
23GO:0098710: guanine import across plasma membrane3.37E-04
24GO:0060627: regulation of vesicle-mediated transport3.37E-04
25GO:0015760: glucose-6-phosphate transport3.37E-04
26GO:1990641: response to iron ion starvation3.37E-04
27GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.37E-04
28GO:0035344: hypoxanthine transport3.37E-04
29GO:1902361: mitochondrial pyruvate transmembrane transport3.37E-04
30GO:0008202: steroid metabolic process6.25E-04
31GO:0009626: plant-type hypersensitive response6.88E-04
32GO:0046686: response to cadmium ion7.10E-04
33GO:0043069: negative regulation of programmed cell death7.29E-04
34GO:0007154: cell communication7.34E-04
35GO:0015712: hexose phosphate transport7.34E-04
36GO:0052542: defense response by callose deposition7.34E-04
37GO:0042325: regulation of phosphorylation7.34E-04
38GO:0019441: tryptophan catabolic process to kynurenine7.34E-04
39GO:0097054: L-glutamate biosynthetic process7.34E-04
40GO:0009156: ribonucleoside monophosphate biosynthetic process7.34E-04
41GO:0031648: protein destabilization7.34E-04
42GO:0006672: ceramide metabolic process7.34E-04
43GO:0006101: citrate metabolic process7.34E-04
44GO:0043066: negative regulation of apoptotic process7.34E-04
45GO:0006850: mitochondrial pyruvate transport7.34E-04
46GO:0015865: purine nucleotide transport7.34E-04
47GO:0035436: triose phosphate transmembrane transport1.19E-03
48GO:0010476: gibberellin mediated signaling pathway1.19E-03
49GO:0010325: raffinose family oligosaccharide biosynthetic process1.19E-03
50GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.19E-03
51GO:0015714: phosphoenolpyruvate transport1.19E-03
52GO:0048281: inflorescence morphogenesis1.19E-03
53GO:0048586: regulation of long-day photoperiodism, flowering1.19E-03
54GO:0010498: proteasomal protein catabolic process1.19E-03
55GO:0034051: negative regulation of plant-type hypersensitive response1.19E-03
56GO:0010359: regulation of anion channel activity1.19E-03
57GO:0051646: mitochondrion localization1.19E-03
58GO:0061158: 3'-UTR-mediated mRNA destabilization1.19E-03
59GO:0070588: calcium ion transmembrane transport1.36E-03
60GO:0071786: endoplasmic reticulum tubular network organization1.71E-03
61GO:0006986: response to unfolded protein1.71E-03
62GO:0010116: positive regulation of abscisic acid biosynthetic process1.71E-03
63GO:0006537: glutamate biosynthetic process1.71E-03
64GO:0046902: regulation of mitochondrial membrane permeability1.71E-03
65GO:0010255: glucose mediated signaling pathway1.71E-03
66GO:0051707: response to other organism2.01E-03
67GO:0031408: oxylipin biosynthetic process2.04E-03
68GO:0030433: ubiquitin-dependent ERAD pathway2.23E-03
69GO:0071456: cellular response to hypoxia2.23E-03
70GO:0015713: phosphoglycerate transport2.30E-03
71GO:0009165: nucleotide biosynthetic process2.30E-03
72GO:0010109: regulation of photosynthesis2.30E-03
73GO:0019676: ammonia assimilation cycle2.30E-03
74GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.30E-03
75GO:0010483: pollen tube reception2.30E-03
76GO:0006536: glutamate metabolic process2.30E-03
77GO:0006097: glyoxylate cycle2.93E-03
78GO:0030308: negative regulation of cell growth2.93E-03
79GO:0009643: photosynthetic acclimation3.63E-03
80GO:0006561: proline biosynthetic process3.63E-03
81GO:0015691: cadmium ion transport3.63E-03
82GO:0070814: hydrogen sulfide biosynthetic process3.63E-03
83GO:1902456: regulation of stomatal opening3.63E-03
84GO:0010337: regulation of salicylic acid metabolic process3.63E-03
85GO:0006623: protein targeting to vacuole3.85E-03
86GO:0009749: response to glucose3.85E-03
87GO:0006635: fatty acid beta-oxidation4.12E-03
88GO:0006120: mitochondrial electron transport, NADH to ubiquinone4.37E-03
89GO:0048444: floral organ morphogenesis4.37E-03
90GO:0050829: defense response to Gram-negative bacterium5.15E-03
91GO:1902074: response to salt5.15E-03
92GO:0050790: regulation of catalytic activity5.15E-03
93GO:0006955: immune response5.15E-03
94GO:0009395: phospholipid catabolic process5.15E-03
95GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.15E-03
96GO:1900057: positive regulation of leaf senescence5.15E-03
97GO:0055114: oxidation-reduction process5.35E-03
98GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.38E-03
99GO:0010200: response to chitin5.38E-03
100GO:0046777: protein autophosphorylation5.67E-03
101GO:1900150: regulation of defense response to fungus5.99E-03
102GO:2000070: regulation of response to water deprivation5.99E-03
103GO:0006102: isocitrate metabolic process5.99E-03
104GO:0016559: peroxisome fission5.99E-03
105GO:0009819: drought recovery5.99E-03
106GO:0019375: galactolipid biosynthetic process5.99E-03
107GO:0009738: abscisic acid-activated signaling pathway6.08E-03
108GO:0006526: arginine biosynthetic process6.87E-03
109GO:0010204: defense response signaling pathway, resistance gene-independent6.87E-03
110GO:0030968: endoplasmic reticulum unfolded protein response6.87E-03
111GO:0009808: lignin metabolic process6.87E-03
112GO:0006972: hyperosmotic response6.87E-03
113GO:0009657: plastid organization6.87E-03
114GO:0009056: catabolic process7.79E-03
115GO:0007338: single fertilization7.79E-03
116GO:0009821: alkaloid biosynthetic process7.79E-03
117GO:0090305: nucleic acid phosphodiester bond hydrolysis7.79E-03
118GO:0006098: pentose-phosphate shunt7.79E-03
119GO:0090333: regulation of stomatal closure7.79E-03
120GO:0016571: histone methylation8.75E-03
121GO:0048268: clathrin coat assembly8.75E-03
122GO:0010150: leaf senescence9.23E-03
123GO:0006896: Golgi to vacuole transport9.76E-03
124GO:0009870: defense response signaling pathway, resistance gene-dependent9.76E-03
125GO:0006995: cellular response to nitrogen starvation9.76E-03
126GO:0006535: cysteine biosynthetic process from serine9.76E-03
127GO:0019538: protein metabolic process9.76E-03
128GO:0000103: sulfate assimilation9.76E-03
129GO:0006032: chitin catabolic process9.76E-03
130GO:0000272: polysaccharide catabolic process1.08E-02
131GO:0000038: very long-chain fatty acid metabolic process1.08E-02
132GO:0007166: cell surface receptor signaling pathway1.10E-02
133GO:0006631: fatty acid metabolic process1.18E-02
134GO:0000266: mitochondrial fission1.19E-02
135GO:0006790: sulfur compound metabolic process1.19E-02
136GO:0018107: peptidyl-threonine phosphorylation1.30E-02
137GO:0055046: microgametogenesis1.30E-02
138GO:0009266: response to temperature stimulus1.42E-02
139GO:0007034: vacuolar transport1.42E-02
140GO:0046854: phosphatidylinositol phosphorylation1.54E-02
141GO:0010167: response to nitrate1.54E-02
142GO:0034976: response to endoplasmic reticulum stress1.66E-02
143GO:0006813: potassium ion transport1.73E-02
144GO:0009809: lignin biosynthetic process1.73E-02
145GO:0006970: response to osmotic stress1.77E-02
146GO:0019344: cysteine biosynthetic process1.79E-02
147GO:0009116: nucleoside metabolic process1.79E-02
148GO:0051603: proteolysis involved in cellular protein catabolic process1.79E-02
149GO:0009695: jasmonic acid biosynthetic process1.92E-02
150GO:0016998: cell wall macromolecule catabolic process2.05E-02
151GO:0042742: defense response to bacterium2.18E-02
152GO:0007005: mitochondrion organization2.19E-02
153GO:0031348: negative regulation of defense response2.19E-02
154GO:0006979: response to oxidative stress2.21E-02
155GO:0006012: galactose metabolic process2.33E-02
156GO:0035556: intracellular signal transduction2.37E-02
157GO:0006817: phosphate ion transport2.47E-02
158GO:0009561: megagametogenesis2.47E-02
159GO:0016567: protein ubiquitination2.52E-02
160GO:0018105: peptidyl-serine phosphorylation2.53E-02
161GO:0016117: carotenoid biosynthetic process2.62E-02
162GO:0042391: regulation of membrane potential2.77E-02
163GO:0006662: glycerol ether metabolic process2.92E-02
164GO:0006885: regulation of pH2.92E-02
165GO:0009651: response to salt stress3.07E-02
166GO:0009737: response to abscisic acid3.09E-02
167GO:0008654: phospholipid biosynthetic process3.23E-02
168GO:0009845: seed germination3.33E-02
169GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.39E-02
170GO:0071554: cell wall organization or biogenesis3.39E-02
171GO:0000302: response to reactive oxygen species3.39E-02
172GO:0002229: defense response to oomycetes3.39E-02
173GO:0007264: small GTPase mediated signal transduction3.55E-02
174GO:0009567: double fertilization forming a zygote and endosperm3.88E-02
175GO:0010252: auxin homeostasis3.88E-02
176GO:0006464: cellular protein modification process3.88E-02
177GO:0071805: potassium ion transmembrane transport4.05E-02
178GO:0051607: defense response to virus4.23E-02
179GO:0009816: defense response to bacterium, incompatible interaction4.58E-02
180GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.58E-02
181GO:0010029: regulation of seed germination4.58E-02
182GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.74E-02
183GO:0009627: systemic acquired resistance4.76E-02
184GO:0006950: response to stress4.94E-02
RankGO TermAdjusted P value
1GO:0051723: protein methylesterase activity0.00E+00
2GO:0008777: acetylornithine deacetylase activity0.00E+00
3GO:0004168: dolichol kinase activity0.00E+00
4GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
5GO:0008863: formate dehydrogenase (NAD+) activity0.00E+00
6GO:0015930: glutamate synthase activity0.00E+00
7GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
8GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
9GO:0004674: protein serine/threonine kinase activity1.95E-06
10GO:0009916: alternative oxidase activity7.15E-05
11GO:0005496: steroid binding1.12E-04
12GO:0005524: ATP binding1.55E-04
13GO:0036402: proteasome-activating ATPase activity1.62E-04
14GO:0016301: kinase activity2.06E-04
15GO:0010209: vacuolar sorting signal binding3.37E-04
16GO:0016041: glutamate synthase (ferredoxin) activity3.37E-04
17GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.37E-04
18GO:0015208: guanine transmembrane transporter activity3.37E-04
19GO:0015294: solute:cation symporter activity3.37E-04
20GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity3.37E-04
21GO:0004321: fatty-acyl-CoA synthase activity3.37E-04
22GO:0015207: adenine transmembrane transporter activity3.37E-04
23GO:0005516: calmodulin binding3.50E-04
24GO:0008142: oxysterol binding4.41E-04
25GO:0004103: choline kinase activity7.34E-04
26GO:0010331: gibberellin binding7.34E-04
27GO:0003994: aconitate hydratase activity7.34E-04
28GO:0015152: glucose-6-phosphate transmembrane transporter activity7.34E-04
29GO:0032934: sterol binding7.34E-04
30GO:0004061: arylformamidase activity7.34E-04
31GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding7.34E-04
32GO:0015036: disulfide oxidoreductase activity7.34E-04
33GO:0051213: dioxygenase activity7.75E-04
34GO:0005388: calcium-transporting ATPase activity1.08E-03
35GO:0004781: sulfate adenylyltransferase (ATP) activity1.19E-03
36GO:0016805: dipeptidase activity1.19E-03
37GO:0071917: triose-phosphate transmembrane transporter activity1.19E-03
38GO:0005093: Rab GDP-dissociation inhibitor activity1.19E-03
39GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.19E-03
40GO:0000975: regulatory region DNA binding1.19E-03
41GO:0050833: pyruvate transmembrane transporter activity1.19E-03
42GO:0017025: TBP-class protein binding1.36E-03
43GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.71E-03
44GO:0004300: enoyl-CoA hydratase activity1.71E-03
45GO:0004351: glutamate decarboxylase activity1.71E-03
46GO:0004749: ribose phosphate diphosphokinase activity1.71E-03
47GO:0008276: protein methyltransferase activity1.71E-03
48GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.30E-03
49GO:0010279: indole-3-acetic acid amido synthetase activity2.30E-03
50GO:0015120: phosphoglycerate transmembrane transporter activity2.30E-03
51GO:0003995: acyl-CoA dehydrogenase activity2.30E-03
52GO:0015210: uracil transmembrane transporter activity2.30E-03
53GO:0003997: acyl-CoA oxidase activity2.93E-03
54GO:0031386: protein tag2.93E-03
55GO:0051538: 3 iron, 4 sulfur cluster binding2.93E-03
56GO:0005471: ATP:ADP antiporter activity2.93E-03
57GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.93E-03
58GO:0008234: cysteine-type peptidase activity3.34E-03
59GO:0004605: phosphatidate cytidylyltransferase activity3.63E-03
60GO:0004526: ribonuclease P activity3.63E-03
61GO:0016491: oxidoreductase activity4.26E-03
62GO:0003978: UDP-glucose 4-epimerase activity4.37E-03
63GO:0004124: cysteine synthase activity4.37E-03
64GO:0051920: peroxiredoxin activity4.37E-03
65GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.37E-03
66GO:0102391: decanoate--CoA ligase activity4.37E-03
67GO:0004842: ubiquitin-protein transferase activity4.73E-03
68GO:0004467: long-chain fatty acid-CoA ligase activity5.15E-03
69GO:0008235: metalloexopeptidase activity5.15E-03
70GO:0102425: myricetin 3-O-glucosyltransferase activity5.15E-03
71GO:0102360: daphnetin 3-O-glucosyltransferase activity5.15E-03
72GO:0008121: ubiquinol-cytochrome-c reductase activity5.15E-03
73GO:0004033: aldo-keto reductase (NADP) activity5.99E-03
74GO:0004869: cysteine-type endopeptidase inhibitor activity5.99E-03
75GO:0016209: antioxidant activity5.99E-03
76GO:0047893: flavonol 3-O-glucosyltransferase activity5.99E-03
77GO:0052747: sinapyl alcohol dehydrogenase activity5.99E-03
78GO:0004630: phospholipase D activity6.87E-03
79GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.87E-03
80GO:0030170: pyridoxal phosphate binding6.99E-03
81GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.79E-03
82GO:0016207: 4-coumarate-CoA ligase activity7.79E-03
83GO:0030955: potassium ion binding8.75E-03
84GO:0004743: pyruvate kinase activity8.75E-03
85GO:0004568: chitinase activity9.76E-03
86GO:0008171: O-methyltransferase activity9.76E-03
87GO:0005545: 1-phosphatidylinositol binding9.76E-03
88GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors9.89E-03
89GO:0004177: aminopeptidase activity1.08E-02
90GO:0003680: AT DNA binding1.08E-02
91GO:0051539: 4 iron, 4 sulfur cluster binding1.13E-02
92GO:0045551: cinnamyl-alcohol dehydrogenase activity1.19E-02
93GO:0004364: glutathione transferase activity1.23E-02
94GO:0005315: inorganic phosphate transmembrane transporter activity1.30E-02
95GO:0019888: protein phosphatase regulator activity1.30E-02
96GO:0030552: cAMP binding1.54E-02
97GO:0030553: cGMP binding1.54E-02
98GO:0008061: chitin binding1.54E-02
99GO:0016887: ATPase activity1.79E-02
100GO:0008134: transcription factor binding1.79E-02
101GO:0005216: ion channel activity1.92E-02
102GO:0015079: potassium ion transmembrane transporter activity1.92E-02
103GO:0008408: 3'-5' exonuclease activity2.05E-02
104GO:0035251: UDP-glucosyltransferase activity2.05E-02
105GO:0004298: threonine-type endopeptidase activity2.05E-02
106GO:0003727: single-stranded RNA binding2.47E-02
107GO:0004499: N,N-dimethylaniline monooxygenase activity2.47E-02
108GO:0047134: protein-disulfide reductase activity2.62E-02
109GO:0005451: monovalent cation:proton antiporter activity2.77E-02
110GO:0005249: voltage-gated potassium channel activity2.77E-02
111GO:0030551: cyclic nucleotide binding2.77E-02
112GO:0030276: clathrin binding2.92E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.07E-02
114GO:0015299: solute:proton antiporter activity3.07E-02
115GO:0016787: hydrolase activity3.12E-02
116GO:0043565: sequence-specific DNA binding3.28E-02
117GO:0046872: metal ion binding3.37E-02
118GO:0048038: quinone binding3.39E-02
119GO:0008137: NADH dehydrogenase (ubiquinone) activity3.39E-02
120GO:0008270: zinc ion binding3.39E-02
121GO:0004197: cysteine-type endopeptidase activity3.55E-02
122GO:0015385: sodium:proton antiporter activity3.72E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.72E-02
124GO:0008237: metallopeptidase activity4.05E-02
125GO:0015297: antiporter activity4.05E-02
126GO:0016597: amino acid binding4.23E-02
127GO:0016413: O-acetyltransferase activity4.23E-02
128GO:0009931: calcium-dependent protein serine/threonine kinase activity4.76E-02
129GO:0030247: polysaccharide binding4.94E-02
130GO:0004683: calmodulin-dependent protein kinase activity4.94E-02
RankGO TermAdjusted P value
1GO:0098687: chromosomal region0.00E+00
2GO:0046862: chromoplast membrane0.00E+00
3GO:0005886: plasma membrane4.32E-06
4GO:0005829: cytosol1.41E-04
5GO:0031597: cytosolic proteasome complex2.20E-04
6GO:0031595: nuclear proteasome complex2.86E-04
7GO:0005770: late endosome3.67E-04
8GO:0005783: endoplasmic reticulum4.78E-04
9GO:0008540: proteasome regulatory particle, base subcomplex6.25E-04
10GO:0005777: peroxisome6.75E-04
11GO:0031314: extrinsic component of mitochondrial inner membrane7.34E-04
12GO:0030139: endocytic vesicle1.19E-03
13GO:0071782: endoplasmic reticulum tubular network1.71E-03
14GO:0000323: lytic vacuole1.71E-03
15GO:0032585: multivesicular body membrane1.71E-03
16GO:0070469: respiratory chain1.86E-03
17GO:0000502: proteasome complex2.93E-03
18GO:0005635: nuclear envelope3.20E-03
19GO:0005778: peroxisomal membrane5.31E-03
20GO:0031305: integral component of mitochondrial inner membrane5.99E-03
21GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.99E-03
22GO:0005773: vacuole6.87E-03
23GO:0031901: early endosome membrane7.79E-03
24GO:0030665: clathrin-coated vesicle membrane8.75E-03
25GO:0017119: Golgi transport complex9.76E-03
26GO:0048471: perinuclear region of cytoplasm1.08E-02
27GO:0005737: cytoplasm1.19E-02
28GO:0005764: lysosome1.42E-02
29GO:0005750: mitochondrial respiratory chain complex III1.42E-02
30GO:0005887: integral component of plasma membrane1.47E-02
31GO:0030176: integral component of endoplasmic reticulum membrane1.54E-02
32GO:0005769: early endosome1.66E-02
33GO:0005905: clathrin-coated pit2.05E-02
34GO:0005839: proteasome core complex2.05E-02
35GO:0005741: mitochondrial outer membrane2.05E-02
36GO:0005794: Golgi apparatus2.26E-02
37GO:0030136: clathrin-coated vesicle2.62E-02
38GO:0005654: nucleoplasm3.00E-02
39GO:0016021: integral component of membrane3.06E-02
40GO:0009536: plastid3.07E-02
41GO:0005743: mitochondrial inner membrane3.14E-02
42GO:0071944: cell periphery3.72E-02
43GO:0043231: intracellular membrane-bounded organelle3.88E-02
Gene type



Gene DE type