co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G10900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
5	GO:0070584: mitochondrion morphogenesis	0.00E+00
6	GO:0071311: cellular response to acetate	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
9	GO:0071260: cellular response to mechanical stimulus	0.00E+00
10	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
11	GO:0009877: nodulation	0.00E+00
12	GO:0046677: response to antibiotic	0.00E+00
13	GO:0009768: photosynthesis, light harvesting in photosystem I	3.41E-07
14	GO:0015979: photosynthesis	6.99E-07
15	GO:0015995: chlorophyll biosynthetic process	7.06E-06
16	GO:0018298: protein-chromophore linkage	8.80E-06
17	GO:0007623: circadian rhythm	1.95E-05
18	GO:0010114: response to red light	2.43E-05
19	GO:0071470: cellular response to osmotic stress	4.74E-05
20	GO:0009645: response to low light intensity stimulus	6.38E-05
21	GO:0009416: response to light stimulus	9.50E-05
22	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	1.27E-04
23	GO:0015812: gamma-aminobutyric acid transport	1.27E-04
24	GO:0006475: internal protein amino acid acetylation	1.27E-04
25	GO:0006474: N-terminal protein amino acid acetylation	1.27E-04
26	GO:0017198: N-terminal peptidyl-serine acetylation	1.27E-04
27	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.27E-04
28	GO:0010362: negative regulation of anion channel activity by blue light	1.27E-04
29	GO:0000160: phosphorelay signal transduction system	1.94E-04
30	GO:0010218: response to far red light	2.08E-04
31	GO:0009637: response to blue light	2.51E-04
32	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.94E-04
33	GO:0010155: regulation of proton transport	2.94E-04
34	GO:0051262: protein tetramerization	2.94E-04
35	GO:0009915: phloem sucrose loading	2.94E-04
36	GO:0051170: nuclear import	2.94E-04
37	GO:0009640: photomorphogenesis	3.52E-04
38	GO:0071230: cellular response to amino acid stimulus	4.86E-04
39	GO:0090153: regulation of sphingolipid biosynthetic process	4.86E-04
40	GO:1902448: positive regulation of shade avoidance	4.86E-04
41	GO:0006874: cellular calcium ion homeostasis	4.91E-04
42	GO:0003333: amino acid transmembrane transport	5.39E-04
43	GO:0048511: rhythmic process	5.39E-04
44	GO:0010017: red or far-red light signaling pathway	5.89E-04
45	GO:1901000: regulation of response to salt stress	6.95E-04
46	GO:0044211: CTP salvage	6.95E-04
47	GO:0030100: regulation of endocytosis	6.95E-04
48	GO:0070417: cellular response to cold	7.51E-04
49	GO:0030104: water homeostasis	9.21E-04
50	GO:0044206: UMP salvage	9.21E-04
51	GO:2000306: positive regulation of photomorphogenesis	9.21E-04
52	GO:0010600: regulation of auxin biosynthetic process	9.21E-04
53	GO:0015846: polyamine transport	9.21E-04
54	GO:0043097: pyrimidine nucleoside salvage	1.16E-03
55	GO:0009904: chloroplast accumulation movement	1.16E-03
56	GO:0006461: protein complex assembly	1.16E-03
57	GO:0016123: xanthophyll biosynthetic process	1.16E-03
58	GO:0055114: oxidation-reduction process	1.32E-03
59	GO:0000060: protein import into nucleus, translocation	1.43E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.43E-03
61	GO:0045962: positive regulation of development, heterochronic	1.43E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	1.43E-03
63	GO:0009903: chloroplast avoidance movement	1.71E-03
64	GO:0010077: maintenance of inflorescence meristem identity	1.71E-03
65	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.71E-03
66	GO:0006351: transcription, DNA-templated	1.95E-03
67	GO:0009769: photosynthesis, light harvesting in photosystem II	2.01E-03
68	GO:0010038: response to metal ion	2.01E-03
69	GO:0010161: red light signaling pathway	2.01E-03
70	GO:0009704: de-etiolation	2.32E-03
71	GO:0050821: protein stabilization	2.32E-03
72	GO:0010928: regulation of auxin mediated signaling pathway	2.32E-03
73	GO:0010099: regulation of photomorphogenesis	2.65E-03
74	GO:0009827: plant-type cell wall modification	2.65E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	2.65E-03
76	GO:0010206: photosystem II repair	3.00E-03
77	GO:0090333: regulation of stomatal closure	3.00E-03
78	GO:0048507: meristem development	3.00E-03
79	GO:0009723: response to ethylene	3.30E-03
80	GO:0008356: asymmetric cell division	3.36E-03
81	GO:0009638: phototropism	3.36E-03
82	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.36E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	3.36E-03
84	GO:0009644: response to high light intensity	3.45E-03
85	GO:0080167: response to karrikin	3.61E-03
86	GO:0006535: cysteine biosynthetic process from serine	3.73E-03
87	GO:0009688: abscisic acid biosynthetic process	3.73E-03
88	GO:0009641: shade avoidance	3.73E-03
89	GO:0044550: secondary metabolite biosynthetic process	4.01E-03
90	GO:0015770: sucrose transport	4.12E-03
91	GO:0030148: sphingolipid biosynthetic process	4.12E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	4.12E-03
93	GO:0006816: calcium ion transport	4.12E-03
94	GO:0018107: peptidyl-threonine phosphorylation	4.93E-03
95	GO:0009718: anthocyanin-containing compound biosynthetic process	4.93E-03
96	GO:0009767: photosynthetic electron transport chain	4.93E-03
97	GO:0009785: blue light signaling pathway	4.93E-03
98	GO:0009887: animal organ morphogenesis	5.36E-03
99	GO:0009266: response to temperature stimulus	5.36E-03
100	GO:0090351: seedling development	5.80E-03
101	GO:0005985: sucrose metabolic process	5.80E-03
102	GO:0006636: unsaturated fatty acid biosynthetic process	6.25E-03
103	GO:0019344: cysteine biosynthetic process	6.71E-03
104	GO:0009269: response to desiccation	7.68E-03
105	GO:0006355: regulation of transcription, DNA-templated	8.22E-03
106	GO:0071215: cellular response to abscisic acid stimulus	8.69E-03
107	GO:0009686: gibberellin biosynthetic process	8.69E-03
108	GO:0019722: calcium-mediated signaling	9.21E-03
109	GO:0034220: ion transmembrane transport	1.03E-02
110	GO:0010305: leaf vascular tissue pattern formation	1.09E-02
111	GO:0010182: sugar mediated signaling pathway	1.09E-02
112	GO:0010228: vegetative to reproductive phase transition of meristem	1.10E-02
113	GO:0006814: sodium ion transport	1.14E-02
114	GO:0009409: response to cold	1.22E-02
115	GO:0000302: response to reactive oxygen species	1.26E-02
116	GO:0035556: intracellular signal transduction	1.31E-02
117	GO:1901657: glycosyl compound metabolic process	1.38E-02
118	GO:0009658: chloroplast organization	1.63E-02
119	GO:0016126: sterol biosynthetic process	1.63E-02
120	GO:0009911: positive regulation of flower development	1.63E-02
121	GO:0006970: response to osmotic stress	1.76E-02
122	GO:0048573: photoperiodism, flowering	1.83E-02
123	GO:0016311: dephosphorylation	1.90E-02
124	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.10E-02
125	GO:0006811: ion transport	2.11E-02
126	GO:0010119: regulation of stomatal movement	2.19E-02
127	GO:0007568: aging	2.19E-02
128	GO:0009910: negative regulation of flower development	2.19E-02
129	GO:0009631: cold acclimation	2.19E-02
130	GO:0006865: amino acid transport	2.26E-02
131	GO:0034599: cellular response to oxidative stress	2.41E-02
132	GO:0045892: negative regulation of transcription, DNA-templated	2.47E-02
133	GO:0042542: response to hydrogen peroxide	2.72E-02
134	GO:0051707: response to other organism	2.80E-02
135	GO:0006629: lipid metabolic process	2.99E-02
136	GO:0009965: leaf morphogenesis	3.04E-02
137	GO:0048364: root development	3.12E-02
138	GO:0000165: MAPK cascade	3.20E-02
139	GO:0006812: cation transport	3.29E-02
140	GO:0009585: red, far-red light phototransduction	3.46E-02
141	GO:0009909: regulation of flower development	3.72E-02
142	GO:0009740: gibberellic acid mediated signaling pathway	4.26E-02
143	GO:0009624: response to nematode	4.44E-02
144	GO:0018105: peptidyl-serine phosphorylation	4.53E-02
145	GO:0009651: response to salt stress	4.66E-02
146	GO:0009908: flower development	4.78E-02
147	GO:0005975: carbohydrate metabolic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
3	GO:0015276: ligand-gated ion channel activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0009899: ent-kaurene synthase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
11	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
12	GO:0004567: beta-mannosidase activity	0.00E+00
13	GO:0031409: pigment binding	1.40E-05
14	GO:1990190: peptide-glutamate-N-acetyltransferase activity	1.27E-04
15	GO:0052631: sphingolipid delta-8 desaturase activity	1.27E-04
16	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.27E-04
17	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.27E-04
18	GO:0008158: hedgehog receptor activity	1.27E-04
19	GO:0005227: calcium activated cation channel activity	1.27E-04
20	GO:0080079: cellobiose glucosidase activity	1.27E-04
21	GO:1990189: peptide-serine-N-acetyltransferase activity	1.27E-04
22	GO:0008066: glutamate receptor activity	1.27E-04
23	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.27E-04
24	GO:0016168: chlorophyll binding	1.34E-04
25	GO:0016630: protochlorophyllide reductase activity	2.94E-04
26	GO:0008728: GTP diphosphokinase activity	2.94E-04
27	GO:0015180: L-alanine transmembrane transporter activity	2.94E-04
28	GO:0050017: L-3-cyanoalanine synthase activity	2.94E-04
29	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.94E-04
30	GO:0005217: intracellular ligand-gated ion channel activity	3.60E-04
31	GO:0004970: ionotropic glutamate receptor activity	3.60E-04
32	GO:0016805: dipeptidase activity	4.86E-04
33	GO:0004180: carboxypeptidase activity	4.86E-04
34	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.86E-04
35	GO:0015203: polyamine transmembrane transporter activity	6.95E-04
36	GO:0009882: blue light photoreceptor activity	6.95E-04
37	GO:0015189: L-lysine transmembrane transporter activity	6.95E-04
38	GO:0000254: C-4 methylsterol oxidase activity	6.95E-04
39	GO:0015181: arginine transmembrane transporter activity	6.95E-04
40	GO:0004930: G-protein coupled receptor activity	9.21E-04
41	GO:0005253: anion channel activity	9.21E-04
42	GO:0004845: uracil phosphoribosyltransferase activity	9.21E-04
43	GO:0005313: L-glutamate transmembrane transporter activity	9.21E-04
44	GO:0046872: metal ion binding	1.00E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.10E-03
46	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.16E-03
47	GO:0051538: 3 iron, 4 sulfur cluster binding	1.16E-03
48	GO:0000156: phosphorelay response regulator activity	1.20E-03
49	GO:0004462: lactoylglutathione lyase activity	1.43E-03
50	GO:0005247: voltage-gated chloride channel activity	1.43E-03
51	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.43E-03
52	GO:0015297: antiporter activity	1.49E-03
53	GO:0005261: cation channel activity	1.71E-03
54	GO:0004849: uridine kinase activity	1.71E-03
55	GO:0004602: glutathione peroxidase activity	1.71E-03
56	GO:0004124: cysteine synthase activity	1.71E-03
57	GO:0005506: iron ion binding	1.86E-03
58	GO:0008506: sucrose:proton symporter activity	2.01E-03
59	GO:0003993: acid phosphatase activity	2.59E-03
60	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.65E-03
61	GO:0000989: transcription factor activity, transcription factor binding	3.00E-03
62	GO:0071949: FAD binding	3.00E-03
63	GO:0015174: basic amino acid transmembrane transporter activity	3.36E-03
64	GO:0051537: 2 iron, 2 sulfur cluster binding	3.45E-03
65	GO:0015293: symporter activity	3.58E-03
66	GO:0008515: sucrose transmembrane transporter activity	4.12E-03
67	GO:0047372: acylglycerol lipase activity	4.12E-03
68	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.52E-03
69	GO:0015171: amino acid transmembrane transporter activity	4.74E-03
70	GO:0004022: alcohol dehydrogenase (NAD) activity	4.93E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	4.93E-03
72	GO:0000155: phosphorelay sensor kinase activity	4.93E-03
73	GO:0005262: calcium channel activity	4.93E-03
74	GO:0004565: beta-galactosidase activity	4.93E-03
75	GO:0003712: transcription cofactor activity	5.80E-03
76	GO:0004190: aspartic-type endopeptidase activity	5.80E-03
77	GO:0003677: DNA binding	6.59E-03
78	GO:0008134: transcription factor binding	6.71E-03
79	GO:0005216: ion channel activity	7.19E-03
80	GO:0004707: MAP kinase activity	7.68E-03
81	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.43E-03
82	GO:0015144: carbohydrate transmembrane transporter activity	9.12E-03
83	GO:0008514: organic anion transmembrane transporter activity	9.21E-03
84	GO:0005351: sugar:proton symporter activity	1.03E-02
85	GO:0008080: N-acetyltransferase activity	1.09E-02
86	GO:0010181: FMN binding	1.14E-02
87	GO:0004672: protein kinase activity	1.38E-02
88	GO:0102483: scopolin beta-glucosidase activity	1.83E-02
89	GO:0004497: monooxygenase activity	2.03E-02
90	GO:0016787: hydrolase activity	2.43E-02
91	GO:0008422: beta-glucosidase activity	2.48E-02
92	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.62E-02
93	GO:0031625: ubiquitin protein ligase binding	3.72E-02
94	GO:0005515: protein binding	3.85E-02
95	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.16E-02
96	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.16E-02
97	GO:0016491: oxidoreductase activity	4.18E-02
98	GO:0016874: ligase activity	4.26E-02
99	GO:0015035: protein disulfide oxidoreductase activity	4.53E-02
100	GO:0016746: transferase activity, transferring acyl groups	4.53E-02
101	GO:0008270: zinc ion binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	3.85E-10
2	GO:0009941: chloroplast envelope	3.98E-08
3	GO:0009534: chloroplast thylakoid	1.44E-07
4	GO:0010287: plastoglobule	3.32E-07
5	GO:0009522: photosystem I	1.59E-06
6	GO:0009579: thylakoid	1.82E-06
7	GO:0009507: chloroplast	3.00E-06
8	GO:0009538: photosystem I reaction center	8.26E-05
9	GO:0031415: NatA complex	2.94E-04
10	GO:0030076: light-harvesting complex	3.60E-04
11	GO:0016021: integral component of membrane	6.81E-04
12	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	9.21E-04
13	GO:0009898: cytoplasmic side of plasma membrane	9.21E-04
14	GO:0009517: PSII associated light-harvesting complex II	9.21E-04
15	GO:0030660: Golgi-associated vesicle membrane	9.21E-04
16	GO:0009523: photosystem II	9.96E-04
17	GO:0005798: Golgi-associated vesicle	1.43E-03
18	GO:0034707: chloride channel complex	1.43E-03
19	GO:0009986: cell surface	2.01E-03
20	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.32E-03
21	GO:0016020: membrane	3.63E-03
22	GO:0005765: lysosomal membrane	4.12E-03
23	GO:0009706: chloroplast inner membrane	6.09E-03
24	GO:0005769: early endosome	6.25E-03
25	GO:0042651: thylakoid membrane	7.19E-03
26	GO:0005887: integral component of plasma membrane	8.72E-03
27	GO:0005789: endoplasmic reticulum membrane	1.47E-02
28	GO:0009570: chloroplast stroma	1.82E-02
29	GO:0000151: ubiquitin ligase complex	1.97E-02
30	GO:0009707: chloroplast outer membrane	1.97E-02
31	GO:0031977: thylakoid lumen	2.64E-02
32	GO:0031966: mitochondrial membrane	3.29E-02
33	GO:0016607: nuclear speck	3.98E-02
34	GO:0010008: endosome membrane	3.98E-02