co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904281: positive regulation of transcription from RNA polymerase V promoter	0.00E+00
2	GO:1990280: RNA localization to chromatin	0.00E+00
3	GO:0015693: magnesium ion transport	1.00E-06
4	GO:0018107: peptidyl-threonine phosphorylation	6.15E-06
5	GO:1902466: positive regulation of histone H3-K27 trimethylation	9.64E-06
6	GO:1903705: positive regulation of production of siRNA involved in RNA interference	9.64E-06
7	GO:0010501: RNA secondary structure unwinding	2.38E-05
8	GO:0045836: positive regulation of meiotic nuclear division	4.69E-05
9	GO:0009615: response to virus	5.21E-05
10	GO:0051601: exocyst localization	7.16E-05
11	GO:0006346: methylation-dependent chromatin silencing	9.96E-05
12	GO:1903830: magnesium ion transmembrane transport	9.96E-05
13	GO:0030001: metal ion transport	1.07E-04
14	GO:0045927: positive regulation of growth	1.30E-04
15	GO:0035194: posttranscriptional gene silencing by RNA	1.63E-04
16	GO:0018105: peptidyl-serine phosphorylation	2.52E-04
17	GO:0044030: regulation of DNA methylation	3.11E-04
18	GO:0060321: acceptance of pollen	3.11E-04
19	GO:0010497: plasmodesmata-mediated intercellular transport	3.11E-04
20	GO:0000373: Group II intron splicing	3.51E-04
21	GO:0048507: meristem development	3.51E-04
22	GO:0016441: posttranscriptional gene silencing	4.35E-04
23	GO:0080188: RNA-directed DNA methylation	6.61E-04
24	GO:0016575: histone deacetylation	8.07E-04
25	GO:0051321: meiotic cell cycle	8.59E-04
26	GO:0009561: megagametogenesis	1.01E-03
27	GO:0009791: post-embryonic development	1.29E-03
28	GO:0031047: gene silencing by RNA	1.41E-03
29	GO:0035556: intracellular signal transduction	2.09E-03
30	GO:0006887: exocytosis	2.70E-03
31	GO:0009846: pollen germination	3.32E-03
32	GO:0006364: rRNA processing	3.49E-03
33	GO:0009553: embryo sac development	4.34E-03
34	GO:0006396: RNA processing	4.52E-03
35	GO:0006468: protein phosphorylation	5.85E-03
36	GO:0006413: translational initiation	6.15E-03
37	GO:0009860: pollen tube growth	9.21E-03
38	GO:0046777: protein autophosphorylation	1.07E-02
39	GO:0006397: mRNA processing	1.38E-02
40	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.63E-02
41	GO:0009555: pollen development	2.01E-02
42	GO:0009409: response to cold	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0015095: magnesium ion transmembrane transporter activity	6.15E-06
2	GO:0008026: ATP-dependent helicase activity	6.72E-06
3	GO:0046873: metal ion transmembrane transporter activity	2.61E-05
4	GO:0004004: ATP-dependent RNA helicase activity	6.29E-05
5	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.72E-04
6	GO:0003724: RNA helicase activity	3.11E-04
7	GO:0000175: 3'-5'-exoribonuclease activity	5.68E-04
8	GO:0003714: transcription corepressor activity	7.58E-04
9	GO:0005524: ATP binding	8.25E-04
10	GO:0008408: 3'-5' exonuclease activity	8.59E-04
11	GO:0003727: single-stranded RNA binding	1.01E-03
12	GO:0003723: RNA binding	1.06E-03
13	GO:0000149: SNARE binding	2.55E-03
14	GO:0003676: nucleic acid binding	2.63E-03
15	GO:0004674: protein serine/threonine kinase activity	3.30E-03
16	GO:0016301: kinase activity	3.37E-03
17	GO:0005515: protein binding	5.57E-03
18	GO:0003729: mRNA binding	5.88E-03
19	GO:0003743: translation initiation factor activity	7.19E-03
20	GO:0004722: protein serine/threonine phosphatase activity	1.23E-02
21	GO:0000166: nucleotide binding	2.01E-02
22	GO:0030246: carbohydrate binding	2.49E-02
23	GO:0004672: protein kinase activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0005847: mRNA cleavage and polyadenylation specificity factor complex	1.30E-04
2	GO:0000118: histone deacetylase complex	1.98E-04
3	GO:0010494: cytoplasmic stress granule	3.51E-04
4	GO:0005622: intracellular	3.84E-04
5	GO:0000145: exocyst	1.41E-03
6	GO:0015934: large ribosomal subunit	2.26E-03
7	GO:0090406: pollen tube	2.85E-03
8	GO:0005856: cytoskeleton	3.08E-03
9	GO:0005834: heterotrimeric G-protein complex	4.08E-03
10	GO:0005654: nucleoplasm	5.07E-03
11	GO:0009524: phragmoplast	5.36E-03
12	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	9.33E-03
13	GO:0005773: vacuole	2.11E-02
14	GO:0005634: nucleus	4.14E-02
15	GO:0005730: nucleolus	4.84E-02