co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090069: regulation of ribosome biogenesis	0.00E+00
2	GO:0000162: tryptophan biosynthetic process	4.62E-07
3	GO:0009636: response to toxic substance	2.41E-05
4	GO:0055081: anion homeostasis	2.88E-05
5	GO:0080120: CAAX-box protein maturation	2.88E-05
6	GO:0071586: CAAX-box protein processing	2.88E-05
7	GO:0006805: xenobiotic metabolic process	2.88E-05
8	GO:0006422: aspartyl-tRNA aminoacylation	2.88E-05
9	GO:2000232: regulation of rRNA processing	2.88E-05
10	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.28E-05
11	GO:1902626: assembly of large subunit precursor of preribosome	1.27E-04
12	GO:0042256: mature ribosome assembly	1.27E-04
13	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.27E-04
14	GO:0000460: maturation of 5.8S rRNA	2.57E-04
15	GO:0010363: regulation of plant-type hypersensitive response	2.57E-04
16	GO:0006564: L-serine biosynthetic process	3.30E-04
17	GO:0009407: toxin catabolic process	3.31E-04
18	GO:0010043: response to zinc ion	3.47E-04
19	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.06E-04
20	GO:0006751: glutathione catabolic process	4.06E-04
21	GO:0000470: maturation of LSU-rRNA	4.06E-04
22	GO:0000054: ribosomal subunit export from nucleus	4.86E-04
23	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	6.55E-04
24	GO:0006526: arginine biosynthetic process	7.44E-04
25	GO:0009699: phenylpropanoid biosynthetic process	7.44E-04
26	GO:0046686: response to cadmium ion	7.65E-04
27	GO:0009735: response to cytokinin	9.24E-04
28	GO:0006032: chitin catabolic process	1.03E-03
29	GO:0043069: negative regulation of programmed cell death	1.03E-03
30	GO:0000272: polysaccharide catabolic process	1.13E-03
31	GO:0052544: defense response by callose deposition in cell wall	1.13E-03
32	GO:0006541: glutamine metabolic process	1.45E-03
33	GO:0070588: calcium ion transmembrane transport	1.56E-03
34	GO:0080147: root hair cell development	1.79E-03
35	GO:0016998: cell wall macromolecule catabolic process	2.04E-03
36	GO:0030433: ubiquitin-dependent ERAD pathway	2.17E-03
37	GO:0071215: cellular response to abscisic acid stimulus	2.30E-03
38	GO:0042254: ribosome biogenesis	2.38E-03
39	GO:0010197: polar nucleus fusion	2.84E-03
40	GO:0009851: auxin biosynthetic process	3.13E-03
41	GO:0010193: response to ozone	3.28E-03
42	GO:0009630: gravitropism	3.43E-03
43	GO:0010119: regulation of stomatal movement	5.58E-03
44	GO:0051603: proteolysis involved in cellular protein catabolic process	8.92E-03
45	GO:0050832: defense response to fungus	9.88E-03
46	GO:0006511: ubiquitin-dependent protein catabolic process	1.02E-02
47	GO:0009626: plant-type hypersensitive response	1.02E-02
48	GO:0006414: translational elongation	1.12E-02
49	GO:0009651: response to salt stress	1.15E-02
50	GO:0042742: defense response to bacterium	1.53E-02
51	GO:0006413: translational initiation	1.56E-02
52	GO:0009617: response to bacterium	1.86E-02
53	GO:0006412: translation	2.01E-02
54	GO:0080167: response to karrikin	2.61E-02
55	GO:0010200: response to chitin	2.67E-02
56	GO:0016192: vesicle-mediated transport	2.71E-02
57	GO:0006886: intracellular protein transport	3.04E-02
58	GO:0006397: mRNA processing	3.55E-02
59	GO:0006508: proteolysis	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.88E-05
3	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.88E-05
4	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.88E-05
5	GO:0004815: aspartate-tRNA ligase activity	2.88E-05
6	GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity	7.28E-05
7	GO:0003840: gamma-glutamyltransferase activity	1.27E-04
8	GO:0036374: glutathione hydrolase activity	1.27E-04
9	GO:0004049: anthranilate synthase activity	1.27E-04
10	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.89E-04
11	GO:0043023: ribosomal large subunit binding	1.89E-04
12	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.89E-04
13	GO:0004834: tryptophan synthase activity	2.57E-04
14	GO:0005496: steroid binding	3.30E-04
15	GO:0003746: translation elongation factor activity	3.80E-04
16	GO:0004029: aldehyde dehydrogenase (NAD) activity	4.06E-04
17	GO:0036402: proteasome-activating ATPase activity	4.06E-04
18	GO:0004364: glutathione transferase activity	4.68E-04
19	GO:0004656: procollagen-proline 4-dioxygenase activity	4.86E-04
20	GO:0008143: poly(A) binding	5.68E-04
21	GO:0008320: protein transmembrane transporter activity	5.68E-04
22	GO:0043295: glutathione binding	5.68E-04
23	GO:0043022: ribosome binding	6.55E-04
24	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	9.29E-04
25	GO:0004568: chitinase activity	1.03E-03
26	GO:0004129: cytochrome-c oxidase activity	1.13E-03
27	GO:0005388: calcium-transporting ATPase activity	1.34E-03
28	GO:0004175: endopeptidase activity	1.45E-03
29	GO:0017025: TBP-class protein binding	1.56E-03
30	GO:0008061: chitin binding	1.56E-03
31	GO:0031418: L-ascorbic acid binding	1.79E-03
32	GO:0004298: threonine-type endopeptidase activity	2.04E-03
33	GO:0003713: transcription coactivator activity	2.84E-03
34	GO:0001085: RNA polymerase II transcription factor binding	2.84E-03
35	GO:0004222: metalloendopeptidase activity	5.40E-03
36	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	5.58E-03
37	GO:0003735: structural constituent of ribosome	5.94E-03
38	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.94E-03
39	GO:0005507: copper ion binding	1.07E-02
40	GO:0005516: calmodulin binding	1.13E-02
41	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.43E-02
42	GO:0003743: translation initiation factor activity	1.83E-02
43	GO:0003729: mRNA binding	2.27E-02
44	GO:0003682: chromatin binding	2.33E-02
45	GO:0050660: flavin adenine dinucleotide binding	2.48E-02
46	GO:0008233: peptidase activity	2.58E-02
47	GO:0003723: RNA binding	3.34E-02
48	GO:0016887: ATPase activity	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	3.71E-07
2	GO:0032783: ELL-EAF complex	2.88E-05
3	GO:0005901: caveola	7.28E-05
4	GO:0070545: PeBoW complex	7.28E-05
5	GO:0030134: ER to Golgi transport vesicle	7.28E-05
6	GO:0005853: eukaryotic translation elongation factor 1 complex	1.27E-04
7	GO:0005773: vacuole	2.22E-04
8	GO:0005746: mitochondrial respiratory chain	3.30E-04
9	GO:0031597: cytosolic proteasome complex	4.86E-04
10	GO:0005774: vacuolar membrane	5.16E-04
11	GO:0031595: nuclear proteasome complex	5.68E-04
12	GO:0030687: preribosome, large subunit precursor	5.68E-04
13	GO:0000502: proteasome complex	6.49E-04
14	GO:0008540: proteasome regulatory particle, base subcomplex	9.29E-04
15	GO:0030176: integral component of endoplasmic reticulum membrane	1.56E-03
16	GO:0005783: endoplasmic reticulum	1.75E-03
17	GO:0005839: proteasome core complex	2.04E-03
18	GO:0032580: Golgi cisterna membrane	3.73E-03
19	GO:0005667: transcription factor complex	4.54E-03
20	GO:0005730: nucleolus	4.83E-03
21	GO:0009570: chloroplast stroma	6.68E-03
22	GO:0005654: nucleoplasm	1.28E-02
23	GO:0005622: intracellular	1.34E-02
24	GO:0005840: ribosome	1.60E-02
25	GO:0009705: plant-type vacuole membrane	1.64E-02
26	GO:0022627: cytosolic small ribosomal subunit	2.00E-02
27	GO:0005789: endoplasmic reticulum membrane	2.33E-02
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.39E-02
29	GO:0022625: cytosolic large ribosomal subunit	2.71E-02
30	GO:0005887: integral component of plasma membrane	4.29E-02
31	GO:0005737: cytoplasm	4.60E-02