co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010219: regulation of vernalization response	0.00E+00
2	GO:0010478: chlororespiration	0.00E+00
3	GO:0042906: xanthine transport	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:0005997: xylulose metabolic process	0.00E+00
6	GO:0009414: response to water deprivation	3.27E-08
7	GO:0009631: cold acclimation	1.93E-07
8	GO:0009415: response to water	6.31E-07
9	GO:0009737: response to abscisic acid	1.19E-06
10	GO:0009409: response to cold	1.70E-06
11	GO:0007623: circadian rhythm	1.13E-05
12	GO:0009269: response to desiccation	1.60E-05
13	GO:0010286: heat acclimation	7.48E-05
14	GO:0032958: inositol phosphate biosynthetic process	1.08E-04
15	GO:0006369: termination of RNA polymerase II transcription	1.08E-04
16	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.08E-04
17	GO:0009609: response to symbiotic bacterium	1.08E-04
18	GO:0009817: defense response to fungus, incompatible interaction	1.32E-04
19	GO:0051170: nuclear import	2.52E-04
20	GO:0015857: uracil transport	2.52E-04
21	GO:1902884: positive regulation of response to oxidative stress	2.52E-04
22	GO:0015720: allantoin transport	2.52E-04
23	GO:0006883: cellular sodium ion homeostasis	2.52E-04
24	GO:0048833: specification of floral organ number	2.52E-04
25	GO:0009644: response to high light intensity	2.91E-04
26	GO:0006970: response to osmotic stress	3.52E-04
27	GO:0035556: intracellular signal transduction	4.07E-04
28	GO:0071705: nitrogen compound transport	4.19E-04
29	GO:0042344: indole glucosinolate catabolic process	4.19E-04
30	GO:1901562: response to paraquat	4.19E-04
31	GO:0030029: actin filament-based process	4.19E-04
32	GO:1902448: positive regulation of shade avoidance	4.19E-04
33	GO:0048511: rhythmic process	4.33E-04
34	GO:1901332: negative regulation of lateral root development	6.01E-04
35	GO:0006020: inositol metabolic process	6.01E-04
36	GO:0010601: positive regulation of auxin biosynthetic process	6.01E-04
37	GO:1901002: positive regulation of response to salt stress	7.98E-04
38	GO:0048442: sepal development	7.98E-04
39	GO:0009765: photosynthesis, light harvesting	7.98E-04
40	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	7.98E-04
41	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.01E-03
42	GO:1900425: negative regulation of defense response to bacterium	1.23E-03
43	GO:0010029: regulation of seed germination	1.29E-03
44	GO:0006950: response to stress	1.43E-03
45	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	1.47E-03
46	GO:0045926: negative regulation of growth	1.47E-03
47	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.47E-03
48	GO:0010555: response to mannitol	1.47E-03
49	GO:0010468: regulation of gene expression	1.49E-03
50	GO:0000160: phosphorelay signal transduction system	1.66E-03
51	GO:0009645: response to low light intensity stimulus	1.73E-03
52	GO:1902074: response to salt	1.73E-03
53	GO:0010038: response to metal ion	1.73E-03
54	GO:0098869: cellular oxidant detoxification	1.73E-03
55	GO:0007050: cell cycle arrest	1.73E-03
56	GO:0048437: floral organ development	1.73E-03
57	GO:0010218: response to far red light	1.74E-03
58	GO:0009416: response to light stimulus	1.88E-03
59	GO:0009819: drought recovery	2.00E-03
60	GO:0042542: response to hydrogen peroxide	2.46E-03
61	GO:0009640: photomorphogenesis	2.56E-03
62	GO:0010114: response to red light	2.56E-03
63	GO:2000280: regulation of root development	2.88E-03
64	GO:0010018: far-red light signaling pathway	2.88E-03
65	GO:0000165: MAPK cascade	3.08E-03
66	GO:0009651: response to salt stress	3.18E-03
67	GO:0006995: cellular response to nitrogen starvation	3.20E-03
68	GO:0048441: petal development	3.20E-03
69	GO:0055062: phosphate ion homeostasis	3.20E-03
70	GO:0007064: mitotic sister chromatid cohesion	3.20E-03
71	GO:0042538: hyperosmotic salinity response	3.20E-03
72	GO:0010162: seed dormancy process	3.20E-03
73	GO:0009970: cellular response to sulfate starvation	3.20E-03
74	GO:0045892: negative regulation of transcription, DNA-templated	3.47E-03
75	GO:0009682: induced systemic resistance	3.53E-03
76	GO:0052544: defense response by callose deposition in cell wall	3.53E-03
77	GO:0051603: proteolysis involved in cellular protein catabolic process	3.55E-03
78	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.23E-03
79	GO:0050826: response to freezing	4.23E-03
80	GO:0009408: response to heat	4.44E-03
81	GO:0009266: response to temperature stimulus	4.59E-03
82	GO:0048440: carpel development	4.59E-03
83	GO:0090351: seedling development	4.96E-03
84	GO:0042753: positive regulation of circadian rhythm	5.35E-03
85	GO:0009768: photosynthesis, light harvesting in photosystem I	6.15E-03
86	GO:0016575: histone deacetylation	6.15E-03
87	GO:0010431: seed maturation	6.56E-03
88	GO:0010017: red or far-red light signaling pathway	6.99E-03
89	GO:0048443: stamen development	7.87E-03
90	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.32E-03
91	GO:0042631: cellular response to water deprivation	8.79E-03
92	GO:0000226: microtubule cytoskeleton organization	8.79E-03
93	GO:0009738: abscisic acid-activated signaling pathway	8.81E-03
94	GO:0006814: sodium ion transport	9.74E-03
95	GO:0009617: response to bacterium	1.00E-02
96	GO:0009556: microsporogenesis	1.02E-02
97	GO:0000302: response to reactive oxygen species	1.07E-02
98	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.07E-02
99	GO:0045893: positive regulation of transcription, DNA-templated	1.10E-02
100	GO:0009639: response to red or far red light	1.23E-02
101	GO:0019760: glucosinolate metabolic process	1.23E-02
102	GO:0055085: transmembrane transport	1.24E-02
103	GO:0016126: sterol biosynthetic process	1.39E-02
104	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.45E-02
105	GO:0006974: cellular response to DNA damage stimulus	1.51E-02
106	GO:0048573: photoperiodism, flowering	1.56E-02
107	GO:0018298: protein-chromophore linkage	1.68E-02
108	GO:0007568: aging	1.86E-02
109	GO:0009637: response to blue light	1.99E-02
110	GO:0042742: defense response to bacterium	2.25E-02
111	GO:0009926: auxin polar transport	2.38E-02
112	GO:0051707: response to other organism	2.38E-02
113	GO:0000209: protein polyubiquitination	2.45E-02
114	GO:0008643: carbohydrate transport	2.52E-02
115	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.73E-02
116	GO:0009585: red, far-red light phototransduction	2.94E-02
117	GO:0009553: embryo sac development	3.70E-02
118	GO:0009624: response to nematode	3.78E-02
119	GO:0009735: response to cytokinin	3.87E-02
120	GO:0051726: regulation of cell cycle	3.94E-02
121	GO:0042744: hydrogen peroxide catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
3	GO:0000828: inositol hexakisphosphate kinase activity	1.08E-04
4	GO:0004856: xylulokinase activity	1.08E-04
5	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.08E-04
6	GO:0000829: inositol heptakisphosphate kinase activity	1.08E-04
7	GO:0005274: allantoin uptake transmembrane transporter activity	2.52E-04
8	GO:0004096: catalase activity	4.19E-04
9	GO:0004707: MAP kinase activity	4.33E-04
10	GO:0000254: C-4 methylsterol oxidase activity	6.01E-04
11	GO:0005253: anion channel activity	7.98E-04
12	GO:0015210: uracil transmembrane transporter activity	7.98E-04
13	GO:0000156: phosphorelay response regulator activity	9.72E-04
14	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.01E-03
15	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.01E-03
16	GO:0019137: thioglucosidase activity	1.23E-03
17	GO:0005247: voltage-gated chloride channel activity	1.23E-03
18	GO:0004629: phospholipase C activity	1.23E-03
19	GO:0004435: phosphatidylinositol phospholipase C activity	1.47E-03
20	GO:0001104: RNA polymerase II transcription cofactor activity	2.28E-03
21	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.28E-03
22	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.57E-03
23	GO:0009672: auxin:proton symporter activity	2.88E-03
24	GO:0005315: inorganic phosphate transmembrane transporter activity	4.23E-03
25	GO:0031624: ubiquitin conjugating enzyme binding	4.59E-03
26	GO:0003712: transcription cofactor activity	4.96E-03
27	GO:0008270: zinc ion binding	5.31E-03
28	GO:0031409: pigment binding	5.35E-03
29	GO:0051536: iron-sulfur cluster binding	5.75E-03
30	GO:0004407: histone deacetylase activity	5.75E-03
31	GO:0008514: organic anion transmembrane transporter activity	7.87E-03
32	GO:0005351: sugar:proton symporter activity	8.20E-03
33	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	9.26E-03
34	GO:0004197: cysteine-type endopeptidase activity	1.12E-02
35	GO:0005200: structural constituent of cytoskeleton	1.28E-02
36	GO:0016597: amino acid binding	1.34E-02
37	GO:0016168: chlorophyll binding	1.45E-02
38	GO:0102483: scopolin beta-glucosidase activity	1.56E-02
39	GO:0061630: ubiquitin protein ligase activity	1.70E-02
40	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.80E-02
41	GO:0050897: cobalt ion binding	1.86E-02
42	GO:0004871: signal transducer activity	2.03E-02
43	GO:0008422: beta-glucosidase activity	2.12E-02
44	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.12E-02
45	GO:0005215: transporter activity	2.55E-02
46	GO:0005198: structural molecule activity	2.59E-02
47	GO:0015293: symporter activity	2.59E-02
48	GO:0008234: cysteine-type peptidase activity	3.17E-02
49	GO:0045735: nutrient reservoir activity	3.32E-02
50	GO:0004672: protein kinase activity	3.62E-02
51	GO:0003779: actin binding	3.70E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0000323: lytic vacuole	6.01E-04
2	GO:0009898: cytoplasmic side of plasma membrane	7.98E-04
3	GO:0032586: protein storage vacuole membrane	7.98E-04
4	GO:0070847: core mediator complex	1.23E-03
5	GO:0034707: chloride channel complex	1.23E-03
6	GO:0000326: protein storage vacuole	2.28E-03
7	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	2.28E-03
8	GO:0010494: cytoplasmic stress granule	2.57E-03
9	GO:0005764: lysosome	4.59E-03
10	GO:0030076: light-harvesting complex	4.96E-03
11	GO:0010287: plastoglobule	5.76E-03
12	GO:0009941: chloroplast envelope	6.15E-03
13	GO:0015629: actin cytoskeleton	7.42E-03
14	GO:0009522: photosystem I	9.74E-03
15	GO:0009523: photosystem II	1.02E-02
16	GO:0005777: peroxisome	1.10E-02
17	GO:0016592: mediator complex	1.12E-02
18	GO:0009579: thylakoid	1.15E-02
19	GO:0000932: P-body	1.39E-02
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.43E-02
21	GO:0000151: ubiquitin ligase complex	1.68E-02
22	GO:0005622: intracellular	1.91E-02
23	GO:0016021: integral component of membrane	3.38E-02
24	GO:0005834: heterotrimeric G-protein complex	3.47E-02
25	GO:0005623: cell	4.52E-02