Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0090393: sepal giant cell development0.00E+00
6GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
7GO:0019253: reductive pentose-phosphate cycle2.80E-08
8GO:0015979: photosynthesis3.11E-07
9GO:0006810: transport4.65E-07
10GO:0009773: photosynthetic electron transport in photosystem I6.88E-07
11GO:0030388: fructose 1,6-bisphosphate metabolic process3.96E-06
12GO:0016117: carotenoid biosynthetic process1.22E-05
13GO:0006000: fructose metabolic process1.41E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.17E-05
15GO:0010037: response to carbon dioxide5.68E-05
16GO:0015976: carbon utilization5.68E-05
17GO:0019464: glycine decarboxylation via glycine cleavage system5.68E-05
18GO:2000122: negative regulation of stomatal complex development5.68E-05
19GO:0006546: glycine catabolic process5.68E-05
20GO:0006021: inositol biosynthetic process5.68E-05
21GO:0016123: xanthophyll biosynthetic process8.98E-05
22GO:0009658: chloroplast organization9.87E-05
23GO:0009853: photorespiration1.39E-04
24GO:0061077: chaperone-mediated protein folding1.41E-04
25GO:0006659: phosphatidylserine biosynthetic process2.94E-04
26GO:0000066: mitochondrial ornithine transport2.94E-04
27GO:1901349: glucosinolate transport2.94E-04
28GO:0090449: phloem glucosinolate loading2.94E-04
29GO:0006002: fructose 6-phosphate metabolic process3.62E-04
30GO:0046686: response to cadmium ion4.14E-04
31GO:2000123: positive regulation of stomatal complex development6.45E-04
32GO:0043039: tRNA aminoacylation6.45E-04
33GO:0043085: positive regulation of catalytic activity6.94E-04
34GO:0006415: translational termination6.94E-04
35GO:0018298: protein-chromophore linkage8.44E-04
36GO:0006094: gluconeogenesis8.98E-04
37GO:0009767: photosynthetic electron transport chain8.98E-04
38GO:0005986: sucrose biosynthetic process8.98E-04
39GO:0010020: chloroplast fission1.01E-03
40GO:0071492: cellular response to UV-A1.04E-03
41GO:0006696: ergosterol biosynthetic process1.04E-03
42GO:0005977: glycogen metabolic process1.04E-03
43GO:0006011: UDP-glucose metabolic process1.04E-03
44GO:0010581: regulation of starch biosynthetic process1.04E-03
45GO:0016051: carbohydrate biosynthetic process1.13E-03
46GO:0043572: plastid fission1.50E-03
47GO:0032877: positive regulation of DNA endoreduplication1.50E-03
48GO:0006166: purine ribonucleoside salvage1.50E-03
49GO:0006020: inositol metabolic process1.50E-03
50GO:0007231: osmosensory signaling pathway1.50E-03
51GO:0006241: CTP biosynthetic process1.50E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.50E-03
53GO:0006228: UTP biosynthetic process1.50E-03
54GO:0006168: adenine salvage1.50E-03
55GO:0009768: photosynthesis, light harvesting in photosystem I1.53E-03
56GO:0009744: response to sucrose1.56E-03
57GO:0080092: regulation of pollen tube growth1.83E-03
58GO:0006730: one-carbon metabolic process1.83E-03
59GO:0006542: glutamine biosynthetic process2.01E-03
60GO:0019676: ammonia assimilation cycle2.01E-03
61GO:0071486: cellular response to high light intensity2.01E-03
62GO:0009765: photosynthesis, light harvesting2.01E-03
63GO:0006183: GTP biosynthetic process2.01E-03
64GO:0033500: carbohydrate homeostasis2.01E-03
65GO:2000038: regulation of stomatal complex development2.01E-03
66GO:0009902: chloroplast relocation2.01E-03
67GO:0000271: polysaccharide biosynthetic process2.54E-03
68GO:0044209: AMP salvage2.56E-03
69GO:0010375: stomatal complex patterning2.56E-03
70GO:0016120: carotene biosynthetic process2.56E-03
71GO:0006656: phosphatidylcholine biosynthetic process2.56E-03
72GO:0045489: pectin biosynthetic process2.74E-03
73GO:0006096: glycolytic process2.81E-03
74GO:0009409: response to cold2.92E-03
75GO:0010942: positive regulation of cell death3.16E-03
76GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.16E-03
77GO:0006555: methionine metabolic process3.16E-03
78GO:0016554: cytidine to uridine editing3.16E-03
79GO:0009791: post-embryonic development3.16E-03
80GO:0010190: cytochrome b6f complex assembly3.16E-03
81GO:0046855: inositol phosphate dephosphorylation3.16E-03
82GO:0009854: oxidative photosynthetic carbon pathway3.81E-03
83GO:0045926: negative regulation of growth3.81E-03
84GO:0042026: protein refolding3.81E-03
85GO:0006458: 'de novo' protein folding3.81E-03
86GO:0017148: negative regulation of translation3.81E-03
87GO:0009735: response to cytokinin3.87E-03
88GO:0007267: cell-cell signaling4.35E-03
89GO:0010196: nonphotochemical quenching4.49E-03
90GO:0009645: response to low light intensity stimulus4.49E-03
91GO:0055114: oxidation-reduction process4.71E-03
92GO:0010027: thylakoid membrane organization4.88E-03
93GO:0045454: cell redox homeostasis4.95E-03
94GO:0052543: callose deposition in cell wall5.21E-03
95GO:0007155: cell adhesion5.21E-03
96GO:0008610: lipid biosynthetic process5.21E-03
97GO:0009819: drought recovery5.21E-03
98GO:0017004: cytochrome complex assembly5.98E-03
99GO:0019430: removal of superoxide radicals5.98E-03
100GO:0009657: plastid organization5.98E-03
101GO:0032544: plastid translation5.98E-03
102GO:0009817: defense response to fungus, incompatible interaction6.37E-03
103GO:0006754: ATP biosynthetic process6.77E-03
104GO:0048589: developmental growth6.77E-03
105GO:0090305: nucleic acid phosphodiester bond hydrolysis6.77E-03
106GO:0010206: photosystem II repair6.77E-03
107GO:0010119: regulation of stomatal movement7.37E-03
108GO:0035999: tetrahydrofolate interconversion7.60E-03
109GO:1900865: chloroplast RNA modification7.60E-03
110GO:0010380: regulation of chlorophyll biosynthetic process7.60E-03
111GO:0043069: negative regulation of programmed cell death8.48E-03
112GO:0006259: DNA metabolic process8.48E-03
113GO:0010192: mucilage biosynthetic process8.48E-03
114GO:0009870: defense response signaling pathway, resistance gene-dependent8.48E-03
115GO:0006839: mitochondrial transport9.22E-03
116GO:0018119: peptidyl-cysteine S-nitrosylation9.38E-03
117GO:0006816: calcium ion transport9.38E-03
118GO:0019684: photosynthesis, light reaction9.38E-03
119GO:0006265: DNA topological change9.38E-03
120GO:0006790: sulfur compound metabolic process1.03E-02
121GO:0050826: response to freezing1.13E-02
122GO:0009725: response to hormone1.13E-02
123GO:0009644: response to high light intensity1.13E-02
124GO:0006006: glucose metabolic process1.13E-02
125GO:0009887: animal organ morphogenesis1.23E-02
126GO:0010207: photosystem II assembly1.23E-02
127GO:0090351: seedling development1.33E-02
128GO:0070588: calcium ion transmembrane transport1.33E-02
129GO:0046854: phosphatidylinositol phosphorylation1.33E-02
130GO:0042343: indole glucosinolate metabolic process1.33E-02
131GO:0005985: sucrose metabolic process1.33E-02
132GO:0009833: plant-type primary cell wall biogenesis1.44E-02
133GO:0006636: unsaturated fatty acid biosynthetic process1.44E-02
134GO:0071555: cell wall organization1.54E-02
135GO:0007010: cytoskeleton organization1.55E-02
136GO:0009416: response to light stimulus1.62E-02
137GO:0080167: response to karrikin1.64E-02
138GO:0006418: tRNA aminoacylation for protein translation1.66E-02
139GO:0007017: microtubule-based process1.66E-02
140GO:0098542: defense response to other organism1.78E-02
141GO:0019748: secondary metabolic process1.90E-02
142GO:0042545: cell wall modification1.95E-02
143GO:0009294: DNA mediated transformation2.02E-02
144GO:0009742: brassinosteroid mediated signaling pathway2.13E-02
145GO:0006284: base-excision repair2.14E-02
146GO:0019722: calcium-mediated signaling2.14E-02
147GO:0009741: response to brassinosteroid2.53E-02
148GO:0006662: glycerol ether metabolic process2.53E-02
149GO:0007059: chromosome segregation2.66E-02
150GO:0019252: starch biosynthetic process2.80E-02
151GO:0008654: phospholipid biosynthetic process2.80E-02
152GO:0071554: cell wall organization or biogenesis2.94E-02
153GO:0008152: metabolic process3.02E-02
154GO:0007264: small GTPase mediated signal transduction3.08E-02
155GO:0010583: response to cyclopentenone3.08E-02
156GO:0005975: carbohydrate metabolic process3.12E-02
157GO:0006633: fatty acid biosynthetic process3.17E-02
158GO:1901657: glycosyl compound metabolic process3.22E-02
159GO:0010090: trichome morphogenesis3.22E-02
160GO:0045490: pectin catabolic process3.48E-02
161GO:0016126: sterol biosynthetic process3.82E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.97E-02
163GO:0030244: cellulose biosynthetic process4.61E-02
164GO:0048767: root hair elongation4.77E-02
165GO:0000160: phosphorelay signal transduction system4.77E-02
166GO:0009832: plant-type cell wall biogenesis4.77E-02
167GO:0010218: response to far red light4.94E-02
RankGO TermAdjusted P value
1GO:0051738: xanthophyll binding0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0004618: phosphoglycerate kinase activity3.96E-06
14GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.96E-06
15GO:0004375: glycine dehydrogenase (decarboxylating) activity3.17E-05
16GO:0016149: translation release factor activity, codon specific3.17E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.68E-05
18GO:0016168: chlorophyll binding6.09E-05
19GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.78E-04
20GO:0090448: glucosinolate:proton symporter activity2.94E-04
21GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.94E-04
22GO:0080132: fatty acid alpha-hydroxylase activity2.94E-04
23GO:0004831: tyrosine-tRNA ligase activity2.94E-04
24GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.94E-04
25GO:0051996: squalene synthase activity2.94E-04
26GO:0010313: phytochrome binding2.94E-04
27GO:0048038: quinone binding3.75E-04
28GO:0003747: translation release factor activity4.36E-04
29GO:0008047: enzyme activator activity6.02E-04
30GO:0010291: carotene beta-ring hydroxylase activity6.45E-04
31GO:0042389: omega-3 fatty acid desaturase activity6.45E-04
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.45E-04
33GO:0004047: aminomethyltransferase activity6.45E-04
34GO:0052832: inositol monophosphate 3-phosphatase activity6.45E-04
35GO:0008934: inositol monophosphate 1-phosphatase activity6.45E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity6.45E-04
37GO:0000064: L-ornithine transmembrane transporter activity6.45E-04
38GO:0004512: inositol-3-phosphate synthase activity6.45E-04
39GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.45E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.45E-04
41GO:0000234: phosphoethanolamine N-methyltransferase activity6.45E-04
42GO:0008967: phosphoglycolate phosphatase activity6.45E-04
43GO:0005089: Rho guanyl-nucleotide exchange factor activity6.94E-04
44GO:0004089: carbonate dehydratase activity8.98E-04
45GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.04E-03
46GO:0003913: DNA photolyase activity1.04E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.04E-03
48GO:0031409: pigment binding1.25E-03
49GO:0005528: FK506 binding1.39E-03
50GO:0004550: nucleoside diphosphate kinase activity1.50E-03
51GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.50E-03
52GO:0048027: mRNA 5'-UTR binding1.50E-03
53GO:0003999: adenine phosphoribosyltransferase activity1.50E-03
54GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.50E-03
55GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.83E-03
56GO:0022891: substrate-specific transmembrane transporter activity2.00E-03
57GO:0004659: prenyltransferase activity2.01E-03
58GO:0008453: alanine-glyoxylate transaminase activity2.01E-03
59GO:1990137: plant seed peroxidase activity2.01E-03
60GO:0004356: glutamate-ammonia ligase activity2.56E-03
61GO:0008725: DNA-3-methyladenine glycosylase activity2.56E-03
62GO:0004791: thioredoxin-disulfide reductase activity2.94E-03
63GO:0080030: methyl indole-3-acetate esterase activity3.16E-03
64GO:0042578: phosphoric ester hydrolase activity3.16E-03
65GO:0004518: nuclease activity3.61E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.81E-03
67GO:0051920: peroxiredoxin activity3.81E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
69GO:0051753: mannan synthase activity3.81E-03
70GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.85E-03
71GO:0005200: structural constituent of cytoskeleton4.35E-03
72GO:0009881: photoreceptor activity4.49E-03
73GO:0016758: transferase activity, transferring hexosyl groups4.58E-03
74GO:0016209: antioxidant activity5.21E-03
75GO:0008135: translation factor activity, RNA binding5.98E-03
76GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.98E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.98E-03
78GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.77E-03
79GO:0003924: GTPase activity6.81E-03
80GO:0004222: metalloendopeptidase activity7.03E-03
81GO:0016491: oxidoreductase activity8.41E-03
82GO:0044183: protein binding involved in protein folding9.38E-03
83GO:0004860: protein kinase inhibitor activity9.38E-03
84GO:0004185: serine-type carboxypeptidase activity1.04E-02
85GO:0031072: heat shock protein binding1.13E-02
86GO:0005262: calcium channel activity1.13E-02
87GO:0004565: beta-galactosidase activity1.13E-02
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-02
89GO:0008083: growth factor activity1.23E-02
90GO:0005509: calcium ion binding1.34E-02
91GO:0004857: enzyme inhibitor activity1.55E-02
92GO:0045330: aspartyl esterase activity1.56E-02
93GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.72E-02
94GO:0004176: ATP-dependent peptidase activity1.78E-02
95GO:0030599: pectinesterase activity1.89E-02
96GO:0051082: unfolded protein binding2.01E-02
97GO:0016760: cellulose synthase (UDP-forming) activity2.02E-02
98GO:0003756: protein disulfide isomerase activity2.14E-02
99GO:0047134: protein-disulfide reductase activity2.27E-02
100GO:0004812: aminoacyl-tRNA ligase activity2.27E-02
101GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.59E-02
102GO:0019901: protein kinase binding2.80E-02
103GO:0004872: receptor activity2.80E-02
104GO:0046872: metal ion binding3.09E-02
105GO:0000156: phosphorelay response regulator activity3.22E-02
106GO:0016759: cellulose synthase activity3.37E-02
107GO:0005525: GTP binding3.39E-02
108GO:0008483: transaminase activity3.51E-02
109GO:0008237: metallopeptidase activity3.51E-02
110GO:0016413: O-acetyltransferase activity3.66E-02
111GO:0016597: amino acid binding3.66E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity4.13E-02
113GO:0004683: calmodulin-dependent protein kinase activity4.29E-02
114GO:0102483: scopolin beta-glucosidase activity4.29E-02
115GO:0030247: polysaccharide binding4.29E-02
116GO:0042802: identical protein binding4.41E-02
117GO:0008236: serine-type peptidase activity4.44E-02
118GO:0016757: transferase activity, transferring glycosyl groups4.99E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast4.73E-38
5GO:0009535: chloroplast thylakoid membrane3.62E-22
6GO:0009941: chloroplast envelope5.30E-19
7GO:0009570: chloroplast stroma4.14E-17
8GO:0009543: chloroplast thylakoid lumen9.20E-11
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.89E-09
10GO:0009579: thylakoid2.33E-09
11GO:0009534: chloroplast thylakoid2.78E-08
12GO:0048046: apoplast6.16E-08
13GO:0010319: stromule1.95E-06
14GO:0009654: photosystem II oxygen evolving complex4.67E-06
15GO:0005960: glycine cleavage complex3.17E-05
16GO:0030095: chloroplast photosystem II6.35E-05
17GO:0010287: plastoglobule1.20E-04
18GO:0031969: chloroplast membrane1.64E-04
19GO:0031977: thylakoid lumen1.87E-04
20GO:0009782: photosystem I antenna complex2.94E-04
21GO:0019898: extrinsic component of membrane3.43E-04
22GO:0009706: chloroplast inner membrane6.11E-04
23GO:0042170: plastid membrane6.45E-04
24GO:0030076: light-harvesting complex1.13E-03
25GO:0042651: thylakoid membrane1.53E-03
26GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.01E-03
27GO:0009517: PSII associated light-harvesting complex II2.01E-03
28GO:0009523: photosystem II3.16E-03
29GO:0009295: nucleoid4.35E-03
30GO:0009533: chloroplast stromal thylakoid4.49E-03
31GO:0009539: photosystem II reaction center5.98E-03
32GO:0005811: lipid particle5.98E-03
33GO:0045298: tubulin complex6.77E-03
34GO:0016324: apical plasma membrane8.48E-03
35GO:0031012: extracellular matrix1.13E-02
36GO:0009508: plastid chromosome1.13E-02
37GO:0019013: viral nucleocapsid1.13E-02
38GO:0030176: integral component of endoplasmic reticulum membrane1.33E-02
39GO:0005758: mitochondrial intermembrane space1.55E-02
40GO:0009532: plastid stroma1.78E-02
41GO:0016020: membrane1.96E-02
42GO:0009536: plastid2.19E-02
43GO:0009522: photosystem I2.66E-02
44GO:0016021: integral component of membrane2.77E-02
45GO:0005759: mitochondrial matrix3.17E-02
46GO:0005778: peroxisomal membrane3.51E-02
47GO:0009707: chloroplast outer membrane4.61E-02
Gene type



Gene DE type