Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:1905499: trichome papilla formation0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I1.50E-10
9GO:0015979: photosynthesis4.19E-09
10GO:0010196: nonphotochemical quenching6.87E-08
11GO:0009735: response to cytokinin1.82E-06
12GO:0090391: granum assembly1.82E-05
13GO:0042335: cuticle development2.17E-05
14GO:0010027: thylakoid membrane organization7.91E-05
15GO:0006869: lipid transport8.87E-05
16GO:1904966: positive regulation of vitamin E biosynthetic process3.37E-04
17GO:1902025: nitrate import3.37E-04
18GO:0071277: cellular response to calcium ion3.37E-04
19GO:1904964: positive regulation of phytol biosynthetic process3.37E-04
20GO:0080051: cutin transport3.37E-04
21GO:0090548: response to nitrate starvation3.37E-04
22GO:0005991: trehalose metabolic process3.37E-04
23GO:0071588: hydrogen peroxide mediated signaling pathway3.37E-04
24GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.37E-04
25GO:0009443: pyridoxal 5'-phosphate salvage3.37E-04
26GO:0055114: oxidation-reduction process3.38E-04
27GO:0032544: plastid translation4.41E-04
28GO:0016042: lipid catabolic process5.49E-04
29GO:0010115: regulation of abscisic acid biosynthetic process7.34E-04
30GO:1902326: positive regulation of chlorophyll biosynthetic process7.34E-04
31GO:0015908: fatty acid transport7.34E-04
32GO:0030388: fructose 1,6-bisphosphate metabolic process7.34E-04
33GO:0043255: regulation of carbohydrate biosynthetic process7.34E-04
34GO:0018298: protein-chromophore linkage1.08E-03
35GO:0006000: fructose metabolic process1.19E-03
36GO:0009062: fatty acid catabolic process1.19E-03
37GO:0071492: cellular response to UV-A1.19E-03
38GO:0090506: axillary shoot meristem initiation1.19E-03
39GO:0015714: phosphoenolpyruvate transport1.19E-03
40GO:0019253: reductive pentose-phosphate cycle1.22E-03
41GO:0010143: cutin biosynthetic process1.22E-03
42GO:0009409: response to cold1.51E-03
43GO:0010025: wax biosynthetic process1.52E-03
44GO:0010731: protein glutathionylation1.71E-03
45GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.71E-03
46GO:0007231: osmosensory signaling pathway1.71E-03
47GO:0006810: transport1.83E-03
48GO:0031408: oxylipin biosynthetic process2.04E-03
49GO:0016998: cell wall macromolecule catabolic process2.04E-03
50GO:0061077: chaperone-mediated protein folding2.04E-03
51GO:0015713: phosphoglycerate transport2.30E-03
52GO:0010037: response to carbon dioxide2.30E-03
53GO:0009956: radial pattern formation2.30E-03
54GO:0010222: stem vascular tissue pattern formation2.30E-03
55GO:0015976: carbon utilization2.30E-03
56GO:0071486: cellular response to high light intensity2.30E-03
57GO:0045727: positive regulation of translation2.30E-03
58GO:2000122: negative regulation of stomatal complex development2.30E-03
59GO:0015994: chlorophyll metabolic process2.30E-03
60GO:0033500: carbohydrate homeostasis2.30E-03
61GO:0071555: cell wall organization2.34E-03
62GO:0006564: L-serine biosynthetic process2.93E-03
63GO:0006656: phosphatidylcholine biosynthetic process2.93E-03
64GO:0010236: plastoquinone biosynthetic process2.93E-03
65GO:0006461: protein complex assembly2.93E-03
66GO:0006665: sphingolipid metabolic process2.93E-03
67GO:0080110: sporopollenin biosynthetic process2.93E-03
68GO:0010182: sugar mediated signaling pathway3.34E-03
69GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.63E-03
70GO:0010337: regulation of salicylic acid metabolic process3.63E-03
71GO:0018258: protein O-linked glycosylation via hydroxyproline3.63E-03
72GO:0006561: proline biosynthetic process3.63E-03
73GO:0010405: arabinogalactan protein metabolic process3.63E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.63E-03
75GO:0009913: epidermal cell differentiation3.63E-03
76GO:0016554: cytidine to uridine editing3.63E-03
77GO:0042254: ribosome biogenesis3.79E-03
78GO:0010067: procambium histogenesis4.37E-03
79GO:1901259: chloroplast rRNA processing4.37E-03
80GO:0010189: vitamin E biosynthetic process4.37E-03
81GO:0010019: chloroplast-nucleus signaling pathway4.37E-03
82GO:0048444: floral organ morphogenesis4.37E-03
83GO:0009955: adaxial/abaxial pattern specification4.37E-03
84GO:0080167: response to karrikin5.11E-03
85GO:0010444: guard mother cell differentiation5.15E-03
86GO:0006400: tRNA modification5.15E-03
87GO:0009395: phospholipid catabolic process5.15E-03
88GO:0009772: photosynthetic electron transport in photosystem II5.15E-03
89GO:0008610: lipid biosynthetic process5.99E-03
90GO:0009819: drought recovery5.99E-03
91GO:0006605: protein targeting5.99E-03
92GO:0009704: de-etiolation5.99E-03
93GO:0070413: trehalose metabolism in response to stress5.99E-03
94GO:0030091: protein repair5.99E-03
95GO:0045454: cell redox homeostasis6.72E-03
96GO:0009657: plastid organization6.87E-03
97GO:0017004: cytochrome complex assembly6.87E-03
98GO:0006002: fructose 6-phosphate metabolic process6.87E-03
99GO:0010411: xyloglucan metabolic process7.03E-03
100GO:0015995: chlorophyll biosynthetic process7.03E-03
101GO:0042742: defense response to bacterium7.28E-03
102GO:0010206: photosystem II repair7.79E-03
103GO:0034765: regulation of ion transmembrane transport7.79E-03
104GO:0090333: regulation of stomatal closure7.79E-03
105GO:0090305: nucleic acid phosphodiester bond hydrolysis7.79E-03
106GO:1900865: chloroplast RNA modification8.75E-03
107GO:0010205: photoinhibition8.75E-03
108GO:0042761: very long-chain fatty acid biosynthetic process8.75E-03
109GO:0007568: aging9.01E-03
110GO:0045490: pectin catabolic process9.23E-03
111GO:0006032: chitin catabolic process9.76E-03
112GO:0055085: transmembrane transport9.76E-03
113GO:0009688: abscisic acid biosynthetic process9.76E-03
114GO:0034599: cellular response to oxidative stress1.03E-02
115GO:0043085: positive regulation of catalytic activity1.08E-02
116GO:0009750: response to fructose1.08E-02
117GO:0010015: root morphogenesis1.08E-02
118GO:0000038: very long-chain fatty acid metabolic process1.08E-02
119GO:0006816: calcium ion transport1.08E-02
120GO:0005983: starch catabolic process1.19E-02
121GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-02
122GO:0006820: anion transport1.19E-02
123GO:0006006: glucose metabolic process1.30E-02
124GO:0006094: gluconeogenesis1.30E-02
125GO:0005986: sucrose biosynthetic process1.30E-02
126GO:0010588: cotyledon vascular tissue pattern formation1.30E-02
127GO:0042546: cell wall biogenesis1.33E-02
128GO:0009644: response to high light intensity1.38E-02
129GO:0010207: photosystem II assembly1.42E-02
130GO:0009933: meristem structural organization1.42E-02
131GO:0010223: secondary shoot formation1.42E-02
132GO:0009934: regulation of meristem structural organization1.42E-02
133GO:0009825: multidimensional cell growth1.54E-02
134GO:0010167: response to nitrate1.54E-02
135GO:0005985: sucrose metabolic process1.54E-02
136GO:0071732: cellular response to nitric oxide1.54E-02
137GO:0070588: calcium ion transmembrane transport1.54E-02
138GO:0010053: root epidermal cell differentiation1.54E-02
139GO:0006636: unsaturated fatty acid biosynthetic process1.66E-02
140GO:0019762: glucosinolate catabolic process1.66E-02
141GO:0009809: lignin biosynthetic process1.73E-02
142GO:0000027: ribosomal large subunit assembly1.79E-02
143GO:0005992: trehalose biosynthetic process1.79E-02
144GO:0006487: protein N-linked glycosylation1.79E-02
145GO:0009695: jasmonic acid biosynthetic process1.92E-02
146GO:0007017: microtubule-based process1.92E-02
147GO:0009768: photosynthesis, light harvesting in photosystem I1.92E-02
148GO:0051302: regulation of cell division1.92E-02
149GO:0019953: sexual reproduction1.92E-02
150GO:0006096: glycolytic process2.04E-02
151GO:0009269: response to desiccation2.05E-02
152GO:0030245: cellulose catabolic process2.19E-02
153GO:0016226: iron-sulfur cluster assembly2.19E-02
154GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.21E-02
155GO:0009294: DNA mediated transformation2.33E-02
156GO:0071369: cellular response to ethylene stimulus2.33E-02
157GO:0001944: vasculature development2.33E-02
158GO:0010091: trichome branching2.47E-02
159GO:0042127: regulation of cell proliferation2.47E-02
160GO:0019722: calcium-mediated signaling2.47E-02
161GO:0009306: protein secretion2.47E-02
162GO:0010089: xylem development2.47E-02
163GO:0010584: pollen exine formation2.47E-02
164GO:0042391: regulation of membrane potential2.77E-02
165GO:0000413: protein peptidyl-prolyl isomerization2.77E-02
166GO:0010087: phloem or xylem histogenesis2.77E-02
167GO:0006662: glycerol ether metabolic process2.92E-02
168GO:0010305: leaf vascular tissue pattern formation2.92E-02
169GO:0048544: recognition of pollen3.07E-02
170GO:0015986: ATP synthesis coupled proton transport3.07E-02
171GO:0032259: methylation3.26E-02
172GO:0000302: response to reactive oxygen species3.39E-02
173GO:0002229: defense response to oomycetes3.39E-02
174GO:0006635: fatty acid beta-oxidation3.39E-02
175GO:0042744: hydrogen peroxide catabolic process3.51E-02
176GO:0007264: small GTPase mediated signal transduction3.55E-02
177GO:0071281: cellular response to iron ion3.72E-02
178GO:1901657: glycosyl compound metabolic process3.72E-02
179GO:0006633: fatty acid biosynthetic process3.86E-02
180GO:0019760: glucosinolate metabolic process3.88E-02
181GO:0071805: potassium ion transmembrane transport4.05E-02
182GO:0007267: cell-cell signaling4.05E-02
183GO:0007623: circadian rhythm4.24E-02
184GO:0016126: sterol biosynthetic process4.40E-02
185GO:0009627: systemic acquired resistance4.76E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0010301: xanthoxin dehydrogenase activity0.00E+00
3GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0051738: xanthophyll binding0.00E+00
9GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0051920: peroxiredoxin activity4.37E-06
12GO:0016168: chlorophyll binding5.17E-06
13GO:0005528: FK506 binding5.72E-06
14GO:0052689: carboxylic ester hydrolase activity6.73E-06
15GO:0016209: antioxidant activity1.05E-05
16GO:0022891: substrate-specific transmembrane transporter activity1.30E-05
17GO:0016788: hydrolase activity, acting on ester bonds2.29E-05
18GO:0019843: rRNA binding2.33E-05
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.26E-05
20GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.20E-04
21GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.37E-04
22GO:0050308: sugar-phosphatase activity3.37E-04
23GO:0004321: fatty-acyl-CoA synthase activity3.37E-04
24GO:0019203: carbohydrate phosphatase activity3.37E-04
25GO:0005080: protein kinase C binding3.37E-04
26GO:0015245: fatty acid transporter activity3.37E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.37E-04
28GO:0008809: carnitine racemase activity3.37E-04
29GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.37E-04
30GO:0004560: alpha-L-fucosidase activity3.37E-04
31GO:0004033: aldo-keto reductase (NADP) activity3.60E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.34E-04
33GO:0000234: phosphoethanolamine N-methyltransferase activity7.34E-04
34GO:0008967: phosphoglycolate phosphatase activity7.34E-04
35GO:0047746: chlorophyllase activity7.34E-04
36GO:0004617: phosphoglycerate dehydrogenase activity7.34E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.34E-04
38GO:0016630: protochlorophyllide reductase activity7.34E-04
39GO:0008289: lipid binding1.12E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.19E-03
41GO:0045174: glutathione dehydrogenase (ascorbate) activity1.19E-03
42GO:0070402: NADPH binding1.19E-03
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.19E-03
44GO:0016491: oxidoreductase activity1.41E-03
45GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.71E-03
46GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.71E-03
47GO:0004165: dodecenoyl-CoA delta-isomerase activity1.71E-03
48GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.71E-03
49GO:0052793: pectin acetylesterase activity2.30E-03
50GO:0004506: squalene monooxygenase activity2.30E-03
51GO:0043495: protein anchor2.30E-03
52GO:0042277: peptide binding2.30E-03
53GO:0015120: phosphoglycerate transmembrane transporter activity2.30E-03
54GO:0004659: prenyltransferase activity2.30E-03
55GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.30E-03
56GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.30E-03
57GO:1990137: plant seed peroxidase activity2.30E-03
58GO:0030570: pectate lyase activity2.43E-03
59GO:0008381: mechanically-gated ion channel activity2.93E-03
60GO:0009922: fatty acid elongase activity2.93E-03
61GO:0003959: NADPH dehydrogenase activity2.93E-03
62GO:0050662: coenzyme binding3.59E-03
63GO:0004130: cytochrome-c peroxidase activity3.63E-03
64GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.63E-03
65GO:0016688: L-ascorbate peroxidase activity3.63E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.63E-03
67GO:2001070: starch binding3.63E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity3.63E-03
69GO:0004601: peroxidase activity3.68E-03
70GO:0016762: xyloglucan:xyloglucosyl transferase activity4.12E-03
71GO:0005242: inward rectifier potassium channel activity4.37E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.37E-03
73GO:0051753: mannan synthase activity4.37E-03
74GO:0016746: transferase activity, transferring acyl groups4.77E-03
75GO:0016791: phosphatase activity4.99E-03
76GO:0019899: enzyme binding5.15E-03
77GO:0052747: sinapyl alcohol dehydrogenase activity5.99E-03
78GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.87E-03
79GO:0016798: hydrolase activity, acting on glycosyl bonds7.03E-03
80GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.79E-03
81GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.79E-03
82GO:0016207: 4-coumarate-CoA ligase activity7.79E-03
83GO:0030234: enzyme regulator activity9.76E-03
84GO:0004568: chitinase activity9.76E-03
85GO:0008047: enzyme activator activity9.76E-03
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.04E-02
87GO:0046872: metal ion binding1.05E-02
88GO:0045551: cinnamyl-alcohol dehydrogenase activity1.19E-02
89GO:0004364: glutathione transferase activity1.23E-02
90GO:0004565: beta-galactosidase activity1.30E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity1.30E-02
92GO:0004089: carbonate dehydratase activity1.30E-02
93GO:0031072: heat shock protein binding1.30E-02
94GO:0005262: calcium channel activity1.30E-02
95GO:0008266: poly(U) RNA binding1.42E-02
96GO:0051287: NAD binding1.55E-02
97GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.66E-02
98GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.66E-02
99GO:0031409: pigment binding1.66E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.66E-02
101GO:0051536: iron-sulfur cluster binding1.79E-02
102GO:0004857: enzyme inhibitor activity1.79E-02
103GO:0008324: cation transmembrane transporter activity1.92E-02
104GO:0045735: nutrient reservoir activity2.04E-02
105GO:0033612: receptor serine/threonine kinase binding2.05E-02
106GO:0030599: pectinesterase activity2.32E-02
107GO:0008810: cellulase activity2.33E-02
108GO:0003824: catalytic activity2.55E-02
109GO:0047134: protein-disulfide reductase activity2.62E-02
110GO:0005102: receptor binding2.62E-02
111GO:0030551: cyclic nucleotide binding2.77E-02
112GO:0005249: voltage-gated potassium channel activity2.77E-02
113GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.92E-02
114GO:0004791: thioredoxin-disulfide reductase activity3.07E-02
115GO:0048038: quinone binding3.39E-02
116GO:0004518: nuclease activity3.55E-02
117GO:0000156: phosphorelay response regulator activity3.72E-02
118GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.72E-02
119GO:0009055: electron carrier activity3.75E-02
120GO:0016759: cellulose synthase activity3.88E-02
121GO:0016722: oxidoreductase activity, oxidizing metal ions4.05E-02
122GO:0005200: structural constituent of cytoskeleton4.05E-02
123GO:0016597: amino acid binding4.23E-02
124GO:0008375: acetylglucosaminyltransferase activity4.76E-02
125GO:0009931: calcium-dependent protein serine/threonine kinase activity4.76E-02
126GO:0030247: polysaccharide binding4.94E-02
127GO:0004683: calmodulin-dependent protein kinase activity4.94E-02
128GO:0102483: scopolin beta-glucosidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
3GO:0009507: chloroplast1.04E-28
4GO:0009535: chloroplast thylakoid membrane1.20E-25
5GO:0009534: chloroplast thylakoid1.51E-15
6GO:0048046: apoplast3.08E-14
7GO:0009579: thylakoid3.25E-13
8GO:0009941: chloroplast envelope4.83E-13
9GO:0009570: chloroplast stroma1.04E-10
10GO:0009543: chloroplast thylakoid lumen5.55E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.34E-07
12GO:0009523: photosystem II1.37E-06
13GO:0010319: stromule3.28E-06
14GO:0046658: anchored component of plasma membrane1.33E-05
15GO:0005576: extracellular region1.53E-04
16GO:0031977: thylakoid lumen2.62E-04
17GO:0009533: chloroplast stromal thylakoid2.86E-04
18GO:0009923: fatty acid elongase complex3.37E-04
19GO:0016021: integral component of membrane4.26E-04
20GO:0005618: cell wall4.65E-04
21GO:0010287: plastoglobule1.07E-03
22GO:0005853: eukaryotic translation elongation factor 1 complex1.19E-03
23GO:0009897: external side of plasma membrane1.19E-03
24GO:0030095: chloroplast photosystem II1.22E-03
25GO:0009505: plant-type cell wall1.25E-03
26GO:0031225: anchored component of membrane1.32E-03
27GO:0015630: microtubule cytoskeleton1.71E-03
28GO:0042651: thylakoid membrane1.86E-03
29GO:0009517: PSII associated light-harvesting complex II2.30E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.63E-03
31GO:0031969: chloroplast membrane5.11E-03
32GO:0005811: lipid particle6.87E-03
33GO:0005763: mitochondrial small ribosomal subunit7.79E-03
34GO:0016020: membrane1.39E-02
35GO:0030076: light-harvesting complex1.54E-02
36GO:0009654: photosystem II oxygen evolving complex1.92E-02
37GO:0005840: ribosome2.36E-02
38GO:0009706: chloroplast inner membrane2.46E-02
39GO:0009522: photosystem I3.07E-02
40GO:0019898: extrinsic component of membrane3.23E-02
41GO:0005886: plasma membrane4.83E-02
Gene type



Gene DE type