co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G07630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
2	GO:0000390: spliceosomal complex disassembly	0.00E+00
3	GO:0006105: succinate metabolic process	0.00E+00
4	GO:0032497: detection of lipopolysaccharide	0.00E+00
5	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
6	GO:0019484: beta-alanine catabolic process	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0051788: response to misfolded protein	1.59E-06
10	GO:0043248: proteasome assembly	6.00E-05
11	GO:0048544: recognition of pollen	1.20E-04
12	GO:0009450: gamma-aminobutyric acid catabolic process	1.82E-04
13	GO:0007292: female gamete generation	1.82E-04
14	GO:0035344: hypoxanthine transport	1.82E-04
15	GO:0009865: pollen tube adhesion	1.82E-04
16	GO:0046520: sphingoid biosynthetic process	1.82E-04
17	GO:0006540: glutamate decarboxylation to succinate	1.82E-04
18	GO:0035494: SNARE complex disassembly	1.82E-04
19	GO:0098721: uracil import across plasma membrane	1.82E-04
20	GO:0098702: adenine import across plasma membrane	1.82E-04
21	GO:0048455: stamen formation	1.82E-04
22	GO:0046167: glycerol-3-phosphate biosynthetic process	1.82E-04
23	GO:0035266: meristem growth	1.82E-04
24	GO:0098710: guanine import across plasma membrane	1.82E-04
25	GO:0010033: response to organic substance	4.10E-04
26	GO:0050684: regulation of mRNA processing	4.10E-04
27	GO:0006641: triglyceride metabolic process	4.10E-04
28	GO:0009727: detection of ethylene stimulus	4.10E-04
29	GO:0006212: uracil catabolic process	4.10E-04
30	GO:0007584: response to nutrient	4.10E-04
31	GO:0019483: beta-alanine biosynthetic process	4.10E-04
32	GO:0019441: tryptophan catabolic process to kynurenine	4.10E-04
33	GO:0009308: amine metabolic process	4.10E-04
34	GO:0045087: innate immune response	4.79E-04
35	GO:0002237: response to molecule of bacterial origin	5.21E-04
36	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	6.69E-04
37	GO:0060968: regulation of gene silencing	6.69E-04
38	GO:0006954: inflammatory response	6.69E-04
39	GO:0019563: glycerol catabolic process	6.69E-04
40	GO:0032784: regulation of DNA-templated transcription, elongation	6.69E-04
41	GO:1900140: regulation of seedling development	6.69E-04
42	GO:0090630: activation of GTPase activity	6.69E-04
43	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	9.55E-04
44	GO:2001289: lipid X metabolic process	9.55E-04
45	GO:0070301: cellular response to hydrogen peroxide	9.55E-04
46	GO:0072334: UDP-galactose transmembrane transport	9.55E-04
47	GO:0006072: glycerol-3-phosphate metabolic process	9.55E-04
48	GO:0015749: monosaccharide transport	9.55E-04
49	GO:0006809: nitric oxide biosynthetic process	9.55E-04
50	GO:0009963: positive regulation of flavonoid biosynthetic process	9.55E-04
51	GO:0006882: cellular zinc ion homeostasis	9.55E-04
52	GO:0006624: vacuolar protein processing	9.55E-04
53	GO:0006020: inositol metabolic process	9.55E-04
54	GO:0048367: shoot system development	1.22E-03
55	GO:0006536: glutamate metabolic process	1.27E-03
56	GO:0010107: potassium ion import	1.27E-03
57	GO:0010188: response to microbial phytotoxin	1.27E-03
58	GO:0006878: cellular copper ion homeostasis	1.27E-03
59	GO:0010222: stem vascular tissue pattern formation	1.27E-03
60	GO:0035556: intracellular signal transduction	1.46E-03
61	GO:0043097: pyrimidine nucleoside salvage	1.61E-03
62	GO:0009737: response to abscisic acid	1.69E-03
63	GO:0006635: fatty acid beta-oxidation	1.71E-03
64	GO:0048232: male gamete generation	1.98E-03
65	GO:0006206: pyrimidine nucleobase metabolic process	1.98E-03
66	GO:0007035: vacuolar acidification	1.98E-03
67	GO:0050665: hydrogen peroxide biosynthetic process	1.98E-03
68	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.98E-03
69	GO:0048827: phyllome development	1.98E-03
70	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.38E-03
71	GO:0006694: steroid biosynthetic process	2.38E-03
72	GO:0048280: vesicle fusion with Golgi apparatus	2.38E-03
73	GO:0031930: mitochondria-nucleus signaling pathway	2.38E-03
74	GO:0009395: phospholipid catabolic process	2.80E-03
75	GO:0048528: post-embryonic root development	2.80E-03
76	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.80E-03
77	GO:0071669: plant-type cell wall organization or biogenesis	2.80E-03
78	GO:0006333: chromatin assembly or disassembly	2.80E-03
79	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.80E-03
80	GO:0009061: anaerobic respiration	3.24E-03
81	GO:0009690: cytokinin metabolic process	3.24E-03
82	GO:0006605: protein targeting	3.24E-03
83	GO:0006491: N-glycan processing	3.24E-03
84	GO:0009415: response to water	3.24E-03
85	GO:0010078: maintenance of root meristem identity	3.24E-03
86	GO:0048767: root hair elongation	3.36E-03
87	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.41E-03
88	GO:0006499: N-terminal protein myristoylation	3.53E-03
89	GO:0006811: ion transport	3.53E-03
90	GO:0010119: regulation of stomatal movement	3.70E-03
91	GO:0043562: cellular response to nitrogen levels	3.71E-03
92	GO:0046916: cellular transition metal ion homeostasis	4.20E-03
93	GO:0006468: protein phosphorylation	4.22E-03
94	GO:0030001: metal ion transport	4.61E-03
95	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.71E-03
96	GO:0008202: steroid metabolic process	4.71E-03
97	GO:0009744: response to sucrose	5.21E-03
98	GO:0006896: Golgi to vacuole transport	5.24E-03
99	GO:0009688: abscisic acid biosynthetic process	5.24E-03
100	GO:0048829: root cap development	5.24E-03
101	GO:0010015: root morphogenesis	5.79E-03
102	GO:0043085: positive regulation of catalytic activity	5.79E-03
103	GO:0052544: defense response by callose deposition in cell wall	5.79E-03
104	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.35E-03
105	GO:0080167: response to karrikin	6.77E-03
106	GO:0006829: zinc II ion transport	6.94E-03
107	GO:2000012: regulation of auxin polar transport	6.94E-03
108	GO:0009725: response to hormone	6.94E-03
109	GO:0006541: glutamine metabolic process	7.55E-03
110	GO:0009933: meristem structural organization	7.55E-03
111	GO:0006446: regulation of translational initiation	7.55E-03
112	GO:0005985: sucrose metabolic process	8.18E-03
113	GO:0090351: seedling development	8.18E-03
114	GO:0034976: response to endoplasmic reticulum stress	8.82E-03
115	GO:0045333: cellular respiration	9.48E-03
116	GO:0006825: copper ion transport	1.02E-02
117	GO:0009269: response to desiccation	1.09E-02
118	GO:0009408: response to heat	1.11E-02
119	GO:0030433: ubiquitin-dependent ERAD pathway	1.16E-02
120	GO:0048364: root development	1.17E-02
121	GO:0071215: cellular response to abscisic acid stimulus	1.23E-02
122	GO:0001944: vasculature development	1.23E-02
123	GO:0009625: response to insect	1.23E-02
124	GO:0010227: floral organ abscission	1.23E-02
125	GO:0009651: response to salt stress	1.32E-02
126	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
127	GO:0051028: mRNA transport	1.38E-02
128	GO:0042147: retrograde transport, endosome to Golgi	1.38E-02
129	GO:0015991: ATP hydrolysis coupled proton transport	1.46E-02
130	GO:0042631: cellular response to water deprivation	1.46E-02
131	GO:0042391: regulation of membrane potential	1.46E-02
132	GO:0000271: polysaccharide biosynthetic process	1.46E-02
133	GO:0080022: primary root development	1.46E-02
134	GO:0010051: xylem and phloem pattern formation	1.46E-02
135	GO:0010118: stomatal movement	1.46E-02
136	GO:0010154: fruit development	1.54E-02
137	GO:0010182: sugar mediated signaling pathway	1.54E-02
138	GO:0046323: glucose import	1.54E-02
139	GO:0015986: ATP synthesis coupled proton transport	1.62E-02
140	GO:0061025: membrane fusion	1.62E-02
141	GO:0042752: regulation of circadian rhythm	1.62E-02
142	GO:0006623: protein targeting to vacuole	1.70E-02
143	GO:0010183: pollen tube guidance	1.70E-02
144	GO:0009851: auxin biosynthetic process	1.70E-02
145	GO:0006891: intra-Golgi vesicle-mediated transport	1.79E-02
146	GO:0007264: small GTPase mediated signal transduction	1.87E-02
147	GO:0009630: gravitropism	1.87E-02
148	GO:0030163: protein catabolic process	1.96E-02
149	GO:0071281: cellular response to iron ion	1.96E-02
150	GO:0010252: auxin homeostasis	2.05E-02
151	GO:0006914: autophagy	2.05E-02
152	GO:0010286: heat acclimation	2.14E-02
153	GO:0006904: vesicle docking involved in exocytosis	2.14E-02
154	GO:0071805: potassium ion transmembrane transport	2.14E-02
155	GO:0016310: phosphorylation	2.17E-02
156	GO:0009555: pollen development	2.30E-02
157	GO:0016126: sterol biosynthetic process	2.32E-02
158	GO:0010029: regulation of seed germination	2.42E-02
159	GO:0006974: cellular response to DNA damage stimulus	2.51E-02
160	GO:0009409: response to cold	2.58E-02
161	GO:0006888: ER to Golgi vesicle-mediated transport	2.61E-02
162	GO:0048573: photoperiodism, flowering	2.61E-02
163	GO:0006950: response to stress	2.61E-02
164	GO:0016049: cell growth	2.71E-02
165	GO:0048481: plant ovule development	2.81E-02
166	GO:0030244: cellulose biosynthetic process	2.81E-02
167	GO:0009832: plant-type cell wall biogenesis	2.91E-02
168	GO:0010311: lateral root formation	2.91E-02
169	GO:0009631: cold acclimation	3.11E-02
170	GO:0009723: response to ethylene	3.11E-02
171	GO:0006508: proteolysis	3.15E-02
172	GO:0006865: amino acid transport	3.22E-02
173	GO:0016051: carbohydrate biosynthetic process	3.32E-02
174	GO:0006511: ubiquitin-dependent protein catabolic process	3.37E-02
175	GO:0006099: tricarboxylic acid cycle	3.43E-02
176	GO:0046777: protein autophosphorylation	3.56E-02
177	GO:0006887: exocytosis	3.76E-02
178	GO:0006897: endocytosis	3.76E-02
179	GO:0051707: response to other organism	3.98E-02
180	GO:0009640: photomorphogenesis	3.98E-02
181	GO:0000209: protein polyubiquitination	4.09E-02
182	GO:0006886: intracellular protein transport	4.11E-02
183	GO:0009965: leaf morphogenesis	4.32E-02
184	GO:0031347: regulation of defense response	4.56E-02
185	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.56E-02
186	GO:0000165: MAPK cascade	4.56E-02
187	GO:0009809: lignin biosynthetic process	4.92E-02
188	GO:0006813: potassium ion transport	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
2	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
3	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
4	GO:0019211: phosphatase activator activity	0.00E+00
5	GO:0017113: dihydropyrimidine dehydrogenase (NADP+) activity	0.00E+00
6	GO:0010293: abscisic aldehyde oxidase activity	0.00E+00
7	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
8	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
9	GO:0004370: glycerol kinase activity	0.00E+00
10	GO:1990446: U1 snRNP binding	0.00E+00
11	GO:0001653: peptide receptor activity	1.35E-05
12	GO:0016301: kinase activity	4.55E-05
13	GO:0035671: enone reductase activity	1.82E-04
14	GO:0000170: sphingosine hydroxylase activity	1.82E-04
15	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	1.82E-04
16	GO:0046870: cadmium ion binding	1.82E-04
17	GO:0015208: guanine transmembrane transporter activity	1.82E-04
18	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	1.82E-04
19	GO:0052595: aliphatic-amine oxidase activity	1.82E-04
20	GO:0015294: solute:cation symporter activity	1.82E-04
21	GO:0003867: 4-aminobutyrate transaminase activity	1.82E-04
22	GO:0015207: adenine transmembrane transporter activity	1.82E-04
23	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.82E-04
24	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	1.82E-04
25	GO:0009679: hexose:proton symporter activity	1.82E-04
26	GO:0038199: ethylene receptor activity	4.10E-04
27	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.10E-04
28	GO:0042284: sphingolipid delta-4 desaturase activity	4.10E-04
29	GO:0004061: arylformamidase activity	4.10E-04
30	GO:0019200: carbohydrate kinase activity	4.10E-04
31	GO:0032791: lead ion binding	4.10E-04
32	GO:0005483: soluble NSF attachment protein activity	6.69E-04
33	GO:0005047: signal recognition particle binding	6.69E-04
34	GO:0019829: cation-transporting ATPase activity	6.69E-04
35	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.69E-04
36	GO:0004383: guanylate cyclase activity	6.69E-04
37	GO:0005524: ATP binding	9.20E-04
38	GO:0004108: citrate (Si)-synthase activity	9.55E-04
39	GO:0030527: structural constituent of chromatin	9.55E-04
40	GO:0051740: ethylene binding	9.55E-04
41	GO:0004300: enoyl-CoA hydratase activity	9.55E-04
42	GO:0016887: ATPase activity	1.05E-03
43	GO:0019905: syntaxin binding	1.27E-03
44	GO:0015210: uracil transmembrane transporter activity	1.27E-03
45	GO:0004031: aldehyde oxidase activity	1.27E-03
46	GO:0050302: indole-3-acetaldehyde oxidase activity	1.27E-03
47	GO:0016004: phospholipase activator activity	1.27E-03
48	GO:0009916: alternative oxidase activity	1.27E-03
49	GO:0004674: protein serine/threonine kinase activity	1.32E-03
50	GO:0004872: receptor activity	1.60E-03
51	GO:0005459: UDP-galactose transmembrane transporter activity	1.61E-03
52	GO:0015145: monosaccharide transmembrane transporter activity	1.61E-03
53	GO:0031593: polyubiquitin binding	1.98E-03
54	GO:0051117: ATPase binding	1.98E-03
55	GO:0036402: proteasome-activating ATPase activity	1.98E-03
56	GO:0008237: metallopeptidase activity	2.19E-03
57	GO:0051753: mannan synthase activity	2.38E-03
58	GO:0004849: uridine kinase activity	2.38E-03
59	GO:0070300: phosphatidic acid binding	2.38E-03
60	GO:0003730: mRNA 3'-UTR binding	2.38E-03
61	GO:0004525: ribonuclease III activity	3.24E-03
62	GO:0004222: metalloendopeptidase activity	3.53E-03
63	GO:0005267: potassium channel activity	3.71E-03
64	GO:0005375: copper ion transmembrane transporter activity	3.71E-03
65	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.20E-03
66	GO:0004743: pyruvate kinase activity	4.71E-03
67	GO:0047617: acyl-CoA hydrolase activity	4.71E-03
68	GO:0030955: potassium ion binding	4.71E-03
69	GO:0015020: glucuronosyltransferase activity	5.24E-03
70	GO:0004673: protein histidine kinase activity	5.24E-03
71	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.79E-03
72	GO:0008081: phosphoric diester hydrolase activity	6.94E-03
73	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.94E-03
74	GO:0000155: phosphorelay sensor kinase activity	6.94E-03
75	GO:0008131: primary amine oxidase activity	7.55E-03
76	GO:0031625: ubiquitin protein ligase binding	7.77E-03
77	GO:0030553: cGMP binding	8.18E-03
78	GO:0017025: TBP-class protein binding	8.18E-03
79	GO:0030552: cAMP binding	8.18E-03
80	GO:0004672: protein kinase activity	8.97E-03
81	GO:0005507: copper ion binding	9.67E-03
82	GO:0043424: protein histidine kinase binding	1.02E-02
83	GO:0005216: ion channel activity	1.02E-02
84	GO:0015079: potassium ion transmembrane transporter activity	1.02E-02
85	GO:0004707: MAP kinase activity	1.09E-02
86	GO:0004176: ATP-dependent peptidase activity	1.09E-02
87	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.09E-02
88	GO:0016779: nucleotidyltransferase activity	1.16E-02
89	GO:0016760: cellulose synthase (UDP-forming) activity	1.23E-02
90	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.29E-02
91	GO:0003756: protein disulfide isomerase activity	1.31E-02
92	GO:0030551: cyclic nucleotide binding	1.46E-02
93	GO:0005249: voltage-gated potassium channel activity	1.46E-02
94	GO:0015144: carbohydrate transmembrane transporter activity	1.50E-02
95	GO:0046873: metal ion transmembrane transporter activity	1.54E-02
96	GO:0005506: iron ion binding	1.61E-02
97	GO:0005351: sugar:proton symporter activity	1.69E-02
98	GO:0048038: quinone binding	1.79E-02
99	GO:0004197: cysteine-type endopeptidase activity	1.87E-02
100	GO:0000156: phosphorelay response regulator activity	1.96E-02
101	GO:0016759: cellulose synthase activity	2.05E-02
102	GO:0008375: acetylglucosaminyltransferase activity	2.51E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.51E-02
104	GO:0030247: polysaccharide binding	2.61E-02
105	GO:0004683: calmodulin-dependent protein kinase activity	2.61E-02
106	GO:0016788: hydrolase activity, acting on ester bonds	2.74E-02
107	GO:0005096: GTPase activator activity	2.91E-02
108	GO:0050660: flavin adenine dinucleotide binding	3.11E-02
109	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.11E-02
110	GO:0050897: cobalt ion binding	3.11E-02
111	GO:0030246: carbohydrate binding	3.33E-02
112	GO:0004497: monooxygenase activity	3.33E-02
113	GO:0003993: acid phosphatase activity	3.43E-02
114	GO:0000149: SNARE binding	3.54E-02
115	GO:0005516: calmodulin binding	3.82E-02
116	GO:0005484: SNAP receptor activity	3.98E-02
117	GO:0035091: phosphatidylinositol binding	4.21E-02
118	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0031981: nuclear lumen	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0016021: integral component of membrane	1.01E-09
5	GO:0005886: plasma membrane	2.00E-08
6	GO:0005783: endoplasmic reticulum	7.81E-06
7	GO:0005802: trans-Golgi network	3.01E-05
8	GO:0030173: integral component of Golgi membrane	8.36E-05
9	GO:0012510: trans-Golgi network transport vesicle membrane	1.82E-04
10	GO:0005794: Golgi apparatus	1.93E-04
11	GO:0005768: endosome	2.44E-04
12	GO:0008540: proteasome regulatory particle, base subcomplex	2.59E-04
13	GO:0005777: peroxisome	3.97E-04
14	GO:0005789: endoplasmic reticulum membrane	8.22E-04
15	GO:0005776: autophagosome	1.27E-03
16	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.27E-03
17	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.61E-03
18	GO:0005829: cytosol	1.76E-03
19	GO:0030140: trans-Golgi network transport vesicle	1.98E-03
20	GO:0031597: cytosolic proteasome complex	2.38E-03
21	GO:0031595: nuclear proteasome complex	2.80E-03
22	GO:0030131: clathrin adaptor complex	3.24E-03
23	GO:0012507: ER to Golgi transport vesicle membrane	3.24E-03
24	GO:0000325: plant-type vacuole	3.70E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-03
26	GO:0031090: organelle membrane	4.20E-03
27	GO:0031201: SNARE complex	4.80E-03
28	GO:0005774: vacuolar membrane	4.88E-03
29	GO:0030125: clathrin vesicle coat	5.24E-03
30	GO:0009506: plasmodesma	6.88E-03
31	GO:0000502: proteasome complex	7.02E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	8.18E-03
33	GO:0010008: endosome membrane	8.57E-03
34	GO:0070469: respiratory chain	1.02E-02
35	GO:0005905: clathrin-coated pit	1.09E-02
36	GO:0031410: cytoplasmic vesicle	1.16E-02
37	GO:0005773: vacuole	1.22E-02
38	GO:0005770: late endosome	1.54E-02
39	GO:0031965: nuclear membrane	1.70E-02
40	GO:0000785: chromatin	1.87E-02
41	GO:0000145: exocyst	1.87E-02
42	GO:0016020: membrane	1.97E-02
43	GO:0000786: nucleosome	3.22E-02
44	GO:0031902: late endosome membrane	3.76E-02